ID   JX513401; SV 1; linear; genomic RNA; STD; VRL; 1812 BP.
XX
AC   JX513401;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH2 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1812
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1812
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; 3fbfc9012866ee747af0f6a46e49dd24.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1812
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /clone="P4"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4N032"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4N032"
FT                   /protein_id="AFV36798.1"
FT                   /translation="MPLSPPPDHTKTFFASAIGICIALGLYTLTRSTLPHVGDSIHSLP
FT                   HGGCYQDGTKRIVYNSPARNFPSSNLFSSLSTPLCLLALIIGLICISEKVKPSTGVRLT
FT                   CRCNHS"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2X4"
FT                   /protein_id="AFV36799.1"
FT                   /translation="MQVQPFLVLVFSLLFTLLLCYSLENLKAEKCTVIITGESVKIFGC
FT                   DFTREFLDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4N0P0"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4N0P0"
FT                   /protein_id="AFV36800.1"
FT                   /translation="MARDEETLSEVSRLPTRDPNSIPEHERSKAVNDVGVMDREGFEAV
FT                   LRRSEDRFNKLKAKCMSELSSVNVTNCGWESGRPKAQLADNLKGDASNIFTRPSMDALL
FT                   VRNYAPESINLATAEELAKISAKVQALGAPEECLAEVFWDICMYCATAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQFCRCYAPVVWNYMLLNEQPPANWDAKGFTENTRY
FT                   AAFDTFDAVTNKSAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GLFGCMPKNNFRESRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4NDY9"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4NDY9"
FT                   /protein_id="AFV36801.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVINIIVSKIVCESAGASSF
FT                   ARARRAKSIGRCPRCYRCSPGFYFTKNCDTKTCVPGISYNDKIKAFIVDGVTM"
FT   3'UTR           1716..1812
XX
SQ   Sequence 1812 BP; 519 A; 359 C; 419 G; 515 T; 0 other;
     atgccactta gccctccacc tgatcacact aaaactttct ttgctagcgc gatcggaatt        60
     tgcattgcac tcggtttata cactctaaca cgatcgacat tacctcacgt gggggatagc       120
     attcatagtc ttccgcacgg gggttgttat caagacggta ccaagagaat tgtttataat       180
     agtccagcta ggaatttccc aagcagtaat cttttttcaa gcttaagtac gcctttgtgc       240
     ctactcgccc tcattattgg actaatttgc ataagtgaga aggtcaaacc aagcacaggt       300
     gtgagactca catgcaggtg caaccattcc tagtattggt tttcagtttg ctattcactt       360
     tactactctg ctatagtcta gaaaatctga aagctgagaa gtgcaccgtg atcatcactg       420
     gggagtctgt gaaaattttt gggtgcgatt ttacgagaga gttcttagat ttcgcaaaac       480
     aagcaaaacc ttttggttca ctttaggttt acagcgctgg aaattgatat tatggctagg       540
     gacgaagaaa ccctcagtga agtgagtcgt ttgccaactc gtgatcctaa ttctatacca       600
     gaacatgaac gtagtaaagc cgtcaacgat gtaggggtca tggatcgaga aggtttcgaa       660
     gctgtgctta ggcgtagtga ggatagattc aacaaactta aagcgaaatg catgtctgag       720
     ttatctagtg ttaacgtgac taattgcggt tgggaatccg gtagacccaa agcgcaattg       780
     gcggacaatt tgaaaggaga tgcttcgaac atcttcactc gcccttcgat ggacgctcta       840
     cttgtgcgga actacgcgcc tgagagcata aacttggcaa ctgcggagga attagctaag       900
     atctcagcaa aggtgcaggc actgggcgca cctgaggaat gcttggcaga agttttctgg       960
     gatatttgta tgtactgtgc tacagcaggc agttccccaa atgtcaatcc aaaagggact      1020
     atttctgtcg ggggtaaagt agtgacaaga gatatggttg tggctgtcat caaggaatat      1080
     tcaactttgc gacagttttg ccgctgttac gcacctgttg tttggaatta tatgctactt      1140
     aacgagcagc cccctgcaaa ttgggacgca aaagggttta ctgagaatac aagatatgca      1200
     gctttcgaca cttttgacgc tgtgacgaat aagtccgcta ttcagccact tgagggactt      1260
     ataagggccc ctaccgatgc agagcggata gcttttgcga ctcataagaa attagcactt      1320
     gcgaaaaact ctcagaattc tcgctatgcc aatacttcag ctgaagtcac cggaggtctc      1380
     tttgggtgca tgcctaaaaa caatttcaga gaaagtcgat gttgatcaag caaagaactt      1440
     accgtaggtt attgcgtgct atatttaaat tgcatactaa taagaattgt gtggatgtta      1500
     taaacatcat cgtgagtaaa atagtgtgtg aaagcgcagg tgcatcttcc tttgctcgag      1560
     cccgtagggc aaaaagtatt gggagatgtc cacgctgtta tcggtgttca cccggttttt      1620
     atttcactaa aaactgtgac accaaaactt gtgttcccgg cattagctat aatgataaga      1680
     ttaaggcgtt tatagttgat ggtgtaacaa tgtgaaaccc ttctataagc cttaatagtg      1740
     atgttgccca taaaacctaa gtaataaata agtgggaacg tataaaataa tttgttttta      1800
     aaatattttc gc                                                          1812
//