ID   JX513400; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   JX513400;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH1 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; 1feb4c298ba2b0cfe9b3295e52cac98b.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH1"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /clone="P2"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4N2W9"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2W9"
FT                   /protein_id="AFV36794.1"
FT                   /translation="MPLRPPPDHTKTFFAGAIGVCIALCLYALTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIVYNSPARNFPSSNLLLNFTSPLCLLALILGLICLSEKLKPSSRSSAT
FT                   CSCNHS"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4N0N8"
FT                   /protein_id="AFV36795.1"
FT                   /translation="MQLQPLIALFAGLLFTWLLCCCFEKFKTEKCTVIITGESVRIIGC
FT                   EFTRDFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4NDY3"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4NDY3"
FT                   /protein_id="AFV36796.1"
FT                   /translation="MANEKEELANVQNLPRRDPETIPEHERSRAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMAELSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALNKNSQNSRYANTSAEITG
FT                   GFFGCFPKNNLRENRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4N2I0"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2I0"
FT                   /protein_id="AFV36797.1"
FT                   /translation="MLIKQRTYRRILRAIFKLHTNKNCVDVIDIIVSKIVCDKVGASKY
FT                   AQARRAKSIGRCPRCFRCSPGFYFTKNCDAKTCFPGISYNAKVKDFIVDGVTM"
FT   3'UTR           1716..1808
XX
SQ   Sequence 1808 BP; 526 A; 388 C; 406 G; 488 T; 0 other;
     atgccactaa ggcctccgcc tgaccatacc aaaactttct tcgctggtgc tattggagtc        60
     tgcattgctc tttgcttgta cgctttaact cgctccacgc tgccacacgt cggagataac       120
     atacatagct tgccgcacgg tggttgctat caggacggta ccaaaaggat agtttacaat       180
     agtcctgcca gaaactttcc aagcagtaac ttactattga atttcacctc gcctctttgc       240
     ttactcgctt taatcctagg tctgatttgc ttgagtgaga agttaaaacc cagctcgaga       300
     tcgagcgcca catgcagttg caaccactca tagcactctt tgccggtctc ttatttacgt       360
     ggcttctttg ctgctgcttt gaaaaattca agactgaaaa gtgcactgtc ataattactg       420
     gggagtccgt taggataatt gggtgtgaat tcacaaggga tttcatcgat ttcgcgaaac       480
     aagcaaaacc ttttggttca ctttaggtat acagcgctct aaattgatat tatggctaac       540
     gaaaaagaag aactcgctaa tgtgcagaat ttgccgcgac gtgatccaga aacaattcca       600
     gaacatgaac gaagcagagc tgtcaatgac gtcggtgtta tggaacgaga gggatttgaa       660
     gcggtgctta gaaggagcga aagtagattc aacaaactca aagaaaaatg catggcagag       720
     ttgtctagta ttaatgtcac aaattgcggt tgggaatcag gacggcccaa agcacaactc       780
     gcggatagtc ttaaagggga cgcttccaac attttcactc gcccctcaat ggacgctctc       840
     ttggtacgga attacgcgcc tgaaagcaat aatatggcca cggccgagga tctagcaaaa       900
     atttctgcca aagtacaagc ccttggggct cctgaagagt gtctggctga agtgttctgg       960
     gatatatgta tgtactgcac cactgctggg agttctccaa atgtgaaccc caaagggacc      1020
     atttctgtcg gcggcaaagt cgtaactaga gatatggtcg tcgcggtcat taaagaatac      1080
     tccacattgc gccaagtttg tcgctgttac gcacccgtag tctggaacta catgttactg      1140
     aatgaacaac cacctgctaa ttgggatgcg aagggattca ctgagaacac taagtacgct      1200
     gcttttgata cttttgatgc cgtgacgaat aaagctgcta tacaacccct tgagggtttg      1260
     atcagggctc ctactgacgc tgagcgcatc gctttcgcga ctcataagaa attagcgttg      1320
     aacaaaaact cgcaaaactc tcgctacgca aacacttctg ccgaaattac cgggggcttc      1380
     tttggatgct ttcctaaaaa caatttgagg gaaaatcgat gttgatcaag cagagaactt      1440
     accgtagaat attgcgtgct atatttaagt tgcatacgaa taaaaattgt gtggatgtaa      1500
     tagacatcat agtgagtaaa atagtgtgtg ataaagtggg ggcttcaaaa tacgctcagg      1560
     ctcgtagagc taagagtatt ggcagatgcc cacgctgttt ccggtgttca cctggttttt      1620
     acttcactaa aaactgtgac gccaaaactt gtttcccagg tattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactataaac cctgactagt      1740
     tgcccataaa acctaaataa tgtataagtg ggaacgaata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//