ID JX508291; SV 1; linear; genomic RNA; STD; VRL; 6337 BP. XX AC JX508291; XX DT 03-MAR-2013 (Rel. 116, Created) DT 07-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Andean potato latent virus, complete genome. XX KW . XX OS Andean potato latent virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6337 RX DOI; 10.1016/j.virusres.2013.01.014. RX PUBMED; 23357297. RA Kreuze J., Koenig R., De Souza J., Vetten H.J., Muller G., Flores B., RA Ziebell H., Cuellar W.; RT "The complete genome sequences of a Peruvian and a Colombian isolate of RT Andean potato latent virus and partial sequences of further isolates RT suggest the existence of two distinct potato-infecting tymovirus species"; RL Virus Res. 173(2):431-435(2013). XX RN [2] RP 1-6337 RA Kreuze J.F., de Souza J., Flores B., Cuellar W.; RT ; RL Submitted (20-AUG-2012) to the INSDC. RL International Potato Center (CIP), Avenida la Molina 1895, Lima 12, Peru XX DR MD5; 9a91fc84f5cbf62b2b9335c9e3d48673. XX CC ##Assembly-Data-START## CC Assembly Method :: Velvet's Assemblyassembler 1.4 v. 1.4; CC Seqman II# v. 5.03 CC Coverage :: 113x CC Sequencing Technology :: Sanger dideoxy sequencing; Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6337 FT /organism="Andean potato latent virus" FT /host="Solanum phureja" FT /isolate="Col" FT /mol_type="genomic RNA" FT /country="Colombia" FT /collection_date="1966" FT /db_xref="taxon:73819" FT CDS 140..2134 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF1; MP" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:M1QL26" FT /protein_id="AGG15963.1" FT /translation="MSNVFSNSSRSLELHSSSRRSNKSDTELCCRASPTVSCSVPMASS FT KRSPSLPPVLRNSQLWLGNHSSSSPHSQSHRDFPPLQPLVLPCKPALHHHVHETSEVPK FT TSESEQQFHPSLQLSAHSSRHHKVSHHLPTSSKHSRRLHARRPHVFQSSSNSGSLPQLP FT DHQLALLQSDRSSRVRLHRPVSSANPLPVLNLRADSPLCPGRPQRRQLQPAPARSRLAQ FT DPQHPLTRTQPLSDQAGLLGPGPFHSHPEKPPSSSSSSPVSHQSLSLKSLSSAQSRPSR FT TEKPKRLFPAPSKRPPGFVPTSSSCSCPGILQNPGMPRAPLSHLSKPTSPPSSSPTASL FT QCSLHLHSSCPHTSHIRPCWIRANSKQQSRVLMGDSKCLGQSTNLRSHECSHPPSSVLR FT VFPQPLPETKTPFSSALEKVPYPFFPCDFDFGYFTSTPPNQVPHPKTPASLHFPQSKTA FT LLSHQAGEPSLSQEIPSTKAHPKKKFLHSYTNRSWQHSAPSSQNQSIPRPSSTHSTKVP FT DHPRSLKGPSSKSFHHHPTTGAGPNLHHQLAPSLLGAPPPTNPRSLPHQHAPLPVSPAM FT GFATNACRLSPTLPSLPPPRAHKSLHISPNSSSSDSSYLSASSSESHTPASTKPFSKLS FT SRIRASNRLGFLLNSSPFFNYSSDSSSSS" FT CDS 147..5642 FT /codon_start=1 FT /product="viral replication protein" FT /note="ORF2; replicase" FT /db_xref="GOA:M1RM48" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M1RM48" FT /protein_id="AGG15964.1" FT /translation="MSFQTALEALNSTVHRDAATNPILNSVVEPLQQSLVQYPWLLPKE FT VLPFLLSSGIPNSGLGTTPHPHPTHKVIETFLLYNHWSCLANQPSTIMFMKPQKFQKLR FT NLNNNFTHLCNYRLTPADTTRYPTTSLHLPNTPVVFMHDALMYFNPAQILDLFLNSPII FT NSLYCSLIVPPESDFTDLSLQPILYQFSISGQTLHYVPEGHNAGSYNQPLHALDWLKIH FT SILSRELNLSVTKLDSWGPVHSILIQRNLPPLHPARQSPINHSLSSLFPQHNRAPRALR FT SQRDSSQHLQSALQALFPPPQAAHALASFKIPECLELPSATFLNQPLRHRLVPLQVYNA FT LFTYTRAVRTLRTSDPAGFVRTQSNKAEYSWVTPNAWDNLQTFALMNAPIRPRVFYEFF FT LNPFQKLKLHFRQHWKKYLTLFSPVISILVISPQLLPIKSPIPKLQLVSIFRSQKLPFS FT HIKLENPLYLKKFLPPKLTQRRNFSIPIPIALGNILLHLHKINPSLAPVPPILPRFQTI FT PVLLRDLPPRASTTIPLLALVPTCIISWLHLFSALPLQQIHDLYHTNMHPSQFRLQWDL FT QPMHVDSPQPFLPYLLPAPTNPSTFPQTPLPVTPPISPPQAQRATPPPAPSPSPSSPAE FT SEPPIGLVSSSTLPPSSTTHQTPPPLPNLSDDLLQVIPPSSDTPPSIPPDSTVTYTGAL FT NHSISPTPFVPQHLPAEPIIPPLMADPTCAGDVIPFHNAFPGLYFSNTASFPTRIRILP FT SSNLPVPALNCLLETFSQLTHYPVLSLWQSLCSMLPDCLLDNEEIRTVGLSTDLLTALC FT FTYHIQCILHTPSGNHPYGMPASSTSIEIDYLPGPPRHFSPHNRFIASAPGSNPSSEPL FT VREALRFKHNGHFLPFHQAHLHSVSLQHAKNLISNMKNGFDGIMHSISTSSSSSPSPKQ FT QILTLDSICDVAQPRTVPVIHIAGFAGCGKTHPIQKLLASKPFKDFRISTPTNELRSEW FT KRDMDPSPSNLWRFSTWESSLFKHSSVLIIDEVYKLPRGYLDLSILADPNLKLVFILGD FT PLQGEYHSTNPHSSNIRLPSEIDRFRRYIDCYCWWTYRLPKLVAELFQIPTFSSEQGSI FT IAVSSHPPGSKNLVNSTSTATSLQQMGHHAITISSSQGITFPEINTILLDRHTNLLSPN FT NCLVAMTRSRKGFAFVGNLHLASNSFGTSYMFSQALARQPINMANCFHSFHQLLLLHHP FT ITTRNLRFVAGHQSTLPNVHKAHQKLSTSGKLSLPPHIPIDHAEDFIITNPVVFGDAID FT PRLPTNHLPPTRLPLHTELLGTNPSSTDSSSPDLLFNTPFSLGLSGETFENLAAHFLPA FT HDPSLKEILYHDQSSLQFPWLDRPFSLSCQPSSLIAATHSPSQDSTLLPASIKKRLRFR FT ESDQPYQITANDQLLGQHLFSSLCKAYGRSPLSSVPFNPVLFAECISLNEYAQLSSKTR FT ATIVANAQRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYIILILGPVK FT KYQRVIDSKDRPPQLYIHCGHTPHQLSSWCQTHLSGQTYLANDYTSFDQSQHGEAVVLE FT LLKMQRLNFPSFFLDLHLHLKTNVQTQFGPLTCMRLTGEPGTYDDNSDYNLAVIFSKYL FT IHSHPIMISGDDSVICGNPSIHPSWSSIEPILHLKFKTETNSHPLFCGYYVSPLGAVRN FT PFALFAKLMICIDDCTLDDKILSYLSEFSVGHTLGDSLIHVIPSAILPYQSACHDFFCR FT NCTPSQKLLLSLDPLPESTILRLILKIKWASKAFFSLLPSKARDLLVSKGSLQSMPFDP FT KVTQLESELLPFFNST" FT CDS 5646..6212 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; CP" FT /db_xref="GOA:M1RV00" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M1RV00" FT /protein_id="AGG15965.1" FT /translation="MASSTATIAKQPSINAPGHVLPTPSSELSPSMVLPFQFVATTFGM FT AETAAQITLVSSSAINKLMLSYRHCQLVECSAELTPLAGAVSNPLSVSLVWVSANSTGA FT PTDILNIYGGSSFVLGGPVTAPIPISVPLPFNSVNVVLKDSTIYTDTPKLLAYSPLPAS FT PSKTPTASLQIRGKLRLSSPLLQPN" FT misc_feature 6260..6337 FT /note="similar to tRNA-Val; may have multifunctional role FT in viral replication, translation, and viral RNA stability" XX SQ Sequence 6337 BP; 1425 A; 2278 C; 892 G; 1742 T; 0 other; gtatttgtac ccagaataat cctttgctag tcaaacatta ttcttttctt ttctgtaaaa 60 tttctgcaca cttacacgcc tcctcaggac ccgtgtttgt accctgtaac ctcttgtgtc 120 ttcttcggac cacacttgaa tgtctaatgt cttttcaaac agctctcgaa gccttgaact 180 ccacagttca tcgcgacgca gcaacaaatc cgatactgaa ctctgttgtc gagcctctcc 240 aacagtctct tgttcagtac ccatggcttc ttccaaaaga agtccttccc ttcctcctgt 300 cctcaggaat tcccaactct ggcttgggaa ccactcctca tcctcacccc actcacaaag 360 tcatcgagac tttcctcctt tacaaccact ggtcttgcct tgcaaaccag ccctccacca 420 tcatgttcat gaaacctcag aagttccaaa aacttcggaa tctgaacaac aatttcaccc 480 atctctgcaa ctatcggctc actccagccg acaccacaag gtatcccacc acctccctac 540 atcttccaaa cactcccgtc gtcttcatgc acgacgccct catgtatttc aatccagctc 600 aaattctgga tctcttcctc aactccccga tcatcaactc gctctactgc agtctgatcg 660 ttcctccaga gtcagacttc accgacctgt ctcttcagcc aatcctctac cagttctcaa 720 tctccgggca gactctccac tatgtcccgg aaggccacaa cgcaggcagc tacaaccagc 780 ccctgcacgc tctcgactgg ctcaagatcc acagcatcct ctcacgagaa ctcaacctct 840 cagtgaccaa gctggactct tggggcccgg tccattccat tctcatccag agaaacctcc 900 ctcctcttca tccagctcgc cagtctccca tcaatcactc tctctcaagt ctctttcctc 960 agcacaatcg cgcccctcgc gcactgagaa gccaaagaga ctcttcccag caccttcaaa 1020 gcgccctcca ggctttgttc ccacctcctc aagctgctca tgccctggca tccttcaaaa 1080 tcccggaatg cctcgagctc ccctcagcca cctttctaaa ccaacctctc cgccatcgtc 1140 tagtcccact gcaagtttac aatgctctct tcacctacac tcgagctgtc cgcacacttc 1200 gcacatccga ccctgctgga ttcgtgcgaa ctcaaagcaa caaagccgag tactcatggg 1260 tgactccaaa tgcttgggac aatctacaaa ccttcgctct catgaatgct cccatccgcc 1320 ctcgagtgtt ctacgagttt ttcctcaacc ccttccagaa actaaaactc cattttcgtc 1380 agcactggaa aaagtacctt accctttttt cccctgtgat ttcgattttg gttatttcac 1440 ctcaactcct cccaatcaag tcccccatcc caaaactcca gctagtctcc attttccgca 1500 gtcaaaaact gcccttctct cacatcaagc tggagaaccc tctttatctc aagaaattcc 1560 ttccaccaaa gctcacccaa agaagaaatt tctccattcc tataccaatc gctcttggca 1620 acattctgct ccatcttcac aaaatcaatc catccctcgc cccagttcca cccattctac 1680 caaggttcca gaccatcccc gttctcttaa gggaccttcc tccaagagct tccaccacca 1740 tcccactact ggcgctggtc ccaacctgca tcatcagttg gctccatctc ttctcggcgc 1800 tccccctcca acaaatccac gatctctacc acaccaacat gcacccctcc cagtttcgcc 1860 tgcaatggga tttgcaacca atgcatgtcg actctcccca acccttcctt ccctacctcc 1920 tccccgcgcc cacaaatccc tccacatttc cccaaactcc tcttccagtg actcctccta 1980 tctctccgcc tcaagctcag agagccacac ccccgccagc accaagccct tctccaagct 2040 ctccagcaga atcagagcct ccaatcggct tggtttcctc ctcaactctt cccccttctt 2100 caactactca tcagactcct cctcctcttc ctaacctatc tgatgatctt cttcaagtca 2160 tccctccttc ttctgacacc cccccgtcca taccacctga ctctactgtc acctacactg 2220 gagcgctcaa ccactccatt tctcccactc cctttgttcc acaacatctt ccagccgaac 2280 ctatcattcc cccactgatg gcggatccta cctgtgctgg agatgtcatc ccatttcata 2340 atgcctttcc tggtctctac ttctctaaca ctgcaagctt ccccactcgg atcaggattc 2400 tcccatcttc caatctccct gtccctgctc tcaattgctt gctggaaact ttttcccagc 2460 tcactcacta tcctgtgcta tctctatggc agtctctctg ctcaatgctt cctgactgcc 2520 ttctcgacaa cgaagagatt cgcactgtcg gtctttccac tgaccttctc accgccctct 2580 gcttcaccta ccacattcaa tgcatcctcc acactccttc tggcaatcat ccctatggca 2640 tgccagcttc ctccacctcc atagaaatag attacctccc aggccctccc aggcattttt 2700 ccccccacaa tcgtttcatt gcttcagctc ccggctccaa cccttcttcc gaaccccttg 2760 ttcgcgaagc tctccgcttc aaacacaatg gccattttct acctttccac caagctcatc 2820 tccattctgt ctctctccaa cacgccaaga acctgatttc caatatgaaa aacggttttg 2880 atggcatcat gcattcaatt tcaacttctt cctcctcttc cccatcacca aagcaacaga 2940 tcctcactct cgactcaatt tgtgacgttg ctcagcccag aactgttccc gtcatacaca 3000 ttgctgggtt cgccggttgt ggcaagaccc atcccattca aaagctcctt gcaagcaaac 3060 cattcaagga cttccgcatt tccactccca ctaatgaact aagatccgag tggaaacgag 3120 acatggatcc ttcccccagc aatctctggc gcttttcaac ctgggaatct tctctcttca 3180 aacactcttc tgttctgatc attgatgagg tctacaaact cccccgaggc taccttgatc 3240 tctcaattct tgctgacccc aacttgaaac tcgttttcat cttgggtgat ccactccagg 3300 gtgagtacca ttccaccaac cctcatagct ccaatatccg ccttccttct gagatcgatc 3360 gtttcaggcg ctacattgat tgctactgct ggtggactta tcgcctcccc aaacttgttg 3420 ctgagctatt ccaaattcca actttcagct cagaacaagg ttccatcatt gctgtctcct 3480 ctcatccccc tggctcaaag aacctcgtca actccacgtc cactgccact tccctccagc 3540 aaatgggcca ccatgccatc accattagca gcagccaagg tatcaccttt cctgagatca 3600 acaccattct tctggacagg cataccaatc tgctcagccc caacaactgc ctcgttgcaa 3660 tgacccgatc ccgcaaaggt tttgcatttg ttggcaatct ccacctagcc tccaactcct 3720 tcggcacctc ctacatgttc tctcaagccc tggcccgcca acccatcaat atggccaatt 3780 gcttccattc cttccaccaa ctccttcttc tccatcatcc aatcaccact agaaacctta 3840 ggtttgtagc tggtcaccaa tccacccttc ccaatgttca caaagcccac caaaaacttt 3900 ccacttctgg taagctttct cttcctcccc atatcccaat tgaccatgct gaagacttca 3960 tcatcacaaa tccagttgtc tttggcgacg ccattgatcc ccgtcttccc acaaaccatc 4020 tcccccccac ccgtctcccc ctccacactg agctgctagg aaccaatcct tcttccaccg 4080 actcatcatc tcctgacctc ctcttcaaca cacccttctc tctcggtctt tctggcgaaa 4140 cctttgagaa tcttgcagcc cacttcttgc cagctcatga cccttctctc aaagaaattc 4200 tttatcatga tcagtctagt ctccagttcc cctggcttga cagacctttt tctctatctt 4260 gtcaaccctc ttctctgatt gctgcaaccc actctccttc acaagattca actctactcc 4320 ctgcttccat caagaaaaga ctccgcttca gggagtcaga tcagccctac cagatcaccg 4380 ccaatgacca actcctcggc cagcacctct tctcctccct ttgtaaggcc tacggacggt 4440 ccccactcag ctctgtccct ttcaaccccg tcttgtttgc tgaatgcata agcctcaacg 4500 agtatgctca actctcctct aaaactcgag ctacaatcgt tgccaatgcc cagaggtctg 4560 accctgattg gcgtcacacc acggtcaaga tctttgcaaa ggctcaacat aaagttaatg 4620 acggttccat ctttggatct tggaaggctt gccaaaccct tgccctcatg catgactaca 4680 tcatcctcat cctcggccca gtcaagaaat accaacgagt catcgactcc aaggatcgac 4740 cacctcaact ttacattcat tgtggtcaca ctcctcacca actttcttct tggtgccaaa 4800 cccatctctc tggtcaaact tacctcgcca atgattacac ttcttttgat caatctcaac 4860 atggcgaggc cgttgttctt gaacttctca agatgcaacg tctcaatttt ccatcttttt 4920 tcttagatct ccatctccac ctcaaaacca atgtccagac ccagttcggc ccactcactt 4980 gcatgcgcct cacaggcgaa cccggcacct atgacgacaa ctcagactac aatctggccg 5040 tcatattttc caagtactta atccactctc accccatcat gatttctgga gacgactctg 5100 tcatctgcgg aaatccttcc attcatccca gctggtcttc aattgaaccc attctccacc 5160 tcaagttcaa aactgaaacc aactcccatc ctctcttctg tggctattat gtctctcccc 5220 ttggtgctgt tcgcaatccc tttgctctat ttgccaaact catgatctgc atcgacgatt 5280 gcactcttga tgacaagatt ctttcttatt tgagtgaatt ctccgttggt cacacacttg 5340 gagattcctt aattcatgtc atcccatcag ccatactccc ctatcagtca gcctgccacg 5400 actttttctg ccgcaactgc accccatccc aaaaactcct actttctttg gatccccttc 5460 ctgaatccac cattctccgg ctcatcctca aaattaagtg ggcatccaaa gcctttttct 5520 ctctgttacc ttccaaagcc agggatcttc ttgtctcaaa aggctcactc caatcaatgc 5580 cgttcgatcc caaagttacc caacttgagt ctgaattgct tccctttttc aattcaactt 5640 gaatcatggc ctcatccacc gccaccatcg ccaaacaacc ttccatcaat gctcccggcc 5700 atgtcctccc caccccctct tcagaactat ctccatccat ggttcttccc ttccaatttg 5760 tggccaccac atttggaatg gctgaaacag ctgcccaaat cacccttgtt tcctcctctg 5820 ctatcaacaa gcttatgctt tcctaccgcc attgtcaact cgttgagtgc tcagccgagc 5880 taactccctt ggccggcgct gtttcaaatc ccctctctgt cagccttgtc tgggtttccg 5940 caaattctac tggagctccc accgatattc tcaatatcta tggtggttcc tcttttgtcc 6000 ttggaggccc tgtcaccgct cccatcccaa tctcagtacc cctcccattc aactctgtga 6060 atgttgtctt gaaagacagc accatttaca ctgacactcc caagttgctg gcttactctc 6120 ctctcccagc ctctccttcc aaaactccaa ccgcgtctct acaaattcgc ggcaaactcc 6180 gtctttcctc ccctcttctc caacccaatt agcactcatc ccctccatcc tgtcggttca 6240 ggttaaaaat catgtaattg aaggcagtcc ttctcccttt agcacacaaa ggtcaaatcg 6300 ggtgcgactc cccccctttt ccgagggtat cggaaac 6337 //