ID JX501510; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC JX501510; XX DT 31-OCT-2012 (Rel. 114, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Tomato leaf deformation virus isolate EA-LE3-5K segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf deformation virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2591 RX DOI; 10.1128/JVI.00234-13. RX PUBMED; 23468482. RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M., RA Gilbertson R.L.; RT "Characterization of a new world monopartite begomovirus causing leaf curl RT disease of tomato in ecuador and peru reveals a new direction in RT geminivirus evolution"; RL J. Virol. 87(10):5397-5413(2013). XX RN [2] RP 1-2591 RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F., RA Gilbertson R.L.; RT ; RL Submitted (18-AUG-2012) to the INSDC. RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA RL 95616, USA XX DR MD5; ddc616f51031fb9539bb9898fb6749f0. DR EuropePMC; PMC3648196; 23468482. XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Tomato leaf deformation virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="EA-LE3-5K" FT /mol_type="genomic DNA" FT /country="Ecuador" FT /collection_date="Sep-2010" FT /db_xref="taxon:681518" FT gene 176..931 FT /gene="V1" FT CDS 176..931 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /db_xref="GOA:K4PDB1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K4PDB1" FT /protein_id="AFV52598.1" FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY FT RKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRSYFYDSITN" FT gene complement(509..826) FT /gene="C5" FT CDS complement(509..826) FT /codon_start=1 FT /gene="C5" FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:K4PDB6" FT /protein_id="AFV52603.1" FT /translation="MVLVFPSFLMVVDHMIVDLPKAPHQSLLVTGILTSRDLSIEPMHN FT LKTISKIVLHGGSTGLIVEHVEHLAKVHGTAIGSPVSDQPEHDAVSVVLQLDVLVHPYF FT T" FT gene complement(928..1326) FT /gene="C3" FT CDS complement(928..1326) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:K4P2C4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4P2C4" FT /protein_id="AFV52601.1" FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIQNVEDIPSTTTTVY FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQVSGTTYLNRFRHLVLFYLDNLGVISINN FT VIRSVRFATDKPYVNHVLENHSIKIKLY" FT gene complement(1073..1462) FT /gene="C2" FT CDS complement(1073..1462) FT /codon_start=1 FT /gene="C2" FT /product="TrAP" FT /db_xref="GOA:K4NZR0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4NZR0" FT /protein_id="AFV52600.1" FT /translation="MRNSSSSTPPSIKPRHKIAKTKPIRRKRIDLDCGCSFFLHINCVN FT NGFTHRGEHHCASGREFRFYLGGTKSPLFQDTERGGHTVHNDDSIPHPNTVQPQPEEGA FT STTQSLLELPSLDDISSSFWDDIFK" FT gene complement(1413..2459) FT /gene="C1" FT CDS complement(1413..2459) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:K4P279" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4P279" FT /protein_id="AFV52599.1" FT /translation="MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIK FT IARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYV FT DKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFH FT NLNYNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG FT CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLEKEENAALRAWTLHNAKFIFLN FT SSLYQTEA" FT gene complement(2045..2302) FT /gene="C4" FT CDS complement(2045..2302) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4P040" FT /protein_id="AFV52602.1" FT /translation="MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPA FT PTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKX" XX SQ Sequence 2591 BP; 672 A; 531 C; 593 G; 794 T; 1 other; accggatggc cgcgcgattt ttttaccccc ttgttaagtt tgggaccaca catatactga 60 caaaaccttt tgtccaatca tagagcgtct gacgagctta attattaaat tcctttagac 120 tgagtggtct ataaagaccc agacaaactg taataattga tatctttaac tcaaaatgcc 180 taagcgggat gccccatggc gcttaatggc ggggacctca aagattagcc gtacctccaa 240 ctattcaccc agaggaggta tgggccctaa attcgacaag aatgcggcct gggttaacag 300 gcccatgtac aggaagccca gagtataccg ggttttaaga ggcccagatg ttcccaaggg 360 ctgtgagggg ccctgtaagg tccagtcttt cgagcagcgt cacgatatct cccatattgg 420 caaggtcatg tgtatatccg atgtcacccg tggtaacggt attacccacc gagtcggtaa 480 gcgtttctgt gtgaagtccg tctatatttt aggtaaaata tggatggacg agaacatcaa 540 gttgaagaac cacactaaca gcgtcatgtt ctggttggtc agagaccgga gaccctatag 600 cagtcccatg gactttggcc aggtgttcaa catgttcgac aatgagccca gtactgccac 660 cgtgaagaac gatcttcgag atcgttttca ggttatgcat aggttctatg ctaaggtcac 720 gggaggtcag tatgccagta acgagcaggc tctggtgagg cgcttttgga aggtcaacaa 780 tcatgtggtc tacaaccatc aggaagctgg gaaatacgag aaccatacgg agaacgccct 840 attattgtac atggcatgta ctcatgcctc taaccctgtg tatgctacgt tgaaaatacg 900 tagctatttt tatgattcaa taacaaatta ataaagttta atttttattg aatgattctc 960 aagtacatga tttacatatg gtttatctgt tgcaaatcga acagatctaa ttacattgtt 1020 aatagaaata actcctaaat tatctaaata aaataaaact aaatgtctaa atctatttaa 1080 atatgtcgtc ccagaaactt gaactgatgt cgtccagact tggaagttca agaaggcttt 1140 gtgtagttga agcgccttcc tcaggttgtg gttgaaccgt atttggatgt ggtatactgt 1200 cgtcgttgtg gacggtatgt cctccacgtt ctgtatcttg aaataaaggg gatttggtac 1260 ctcccagata aaaacggaat tctctgcctg atgcacagtg atgttctccc cggtgcgtga 1320 atccattatt aacacagtta atatgcagga agaatgagca gccacagtct aggtctatgc 1380 gtttccttct gatgggcttt gtcttggcaa tcttatgcct cggtttgata gagggaggag 1440 ttgaggaaga tgaatttcgc attgtggagt gtccacgctc ttagagctgc attttcctct 1500 ttctcaagga agtctttata gctctgtcct tctcctggat tgcagagcac gatagagggt 1560 atgccacctt taatttgaat tggctttccg tatttacagt ttgattgcca atccttctgg 1620 gcccctatca gctctttcca atgtttcatc tttaaatatt gcggactgac gtcatctatg 1680 acgttatagt ccgctccatt tgaataaact ttggaattaa aatccaggtg tccactcaga 1740 taattatgtg ggcctagtgc acgagcccac atagtcttac ctgtccttga acatccctct 1800 attattatac tgataggtct ttctggccgc gcagcggcac ccctaccaaa ataatcatca 1860 gcccattctt gcatctcctc cgggacgtta gtgaaggagg agagtggaaa cggaggagac 1920 catggctctg gagccttcga aaaaatttta tctaaattat aatttaaatt atgaaattga 1980 aataaatatt tttcagggag tttctccctt attatttgga gggctgcctc tttgctgccg 2040 ctatttaasg cttctgcggc agcgtcgtta gcagtttggc tgcctcctct agcacttctg 2100 ccgtcgactt ggaattctcc ccattcaagt gtatctccgt ccttgtcgac gtaggcgttg 2160 acgtcggtgc tggatttagc tccctgaacg ttcggatgga aatgtgttga cctggttggg 2220 gataccaggt cgaagaatct gttattctta cattggaatt tgccttggaa ctggagtagc 2280 acgtggagat gatgttgccc atcttcgtga agttcccttg caattttgat atatttctta 2340 tttgtgggtg tctctagatt ttgcaattgg gaaagtgctt cttctttggt taaattgcag 2400 tggggatatg taagaaaata attttttgca tttatcttaa aggccttagg ggggggcatt 2460 atggtaataa atattttgga caccgattgg tttggcttat aaaacttata gcaatcggtg 2520 tactggagtc ttatttatag taggagttcc taaaggatct agcaacacgt ggcggccatc 2580 cgtataatat t 2591 //