ID JX501502; SV 1; circular; genomic DNA; STD; VRL; 2589 BP. XX AC JX501502; XX DT 31-OCT-2012 (Rel. 114, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Tomato leaf deformation virus isolate PA98-1-1 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf deformation virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2589 RX DOI; 10.1128/JVI.00234-13. RX PUBMED; 23468482. RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M., RA Gilbertson R.L.; RT "Characterization of a new world monopartite begomovirus causing leaf curl RT disease of tomato in ecuador and peru reveals a new direction in RT geminivirus evolution"; RL J. Virol. 87(10):5397-5413(2013). XX RN [2] RP 1-2589 RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F., RA Gilbertson R.L.; RT ; RL Submitted (18-AUG-2012) to the INSDC. RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA RL 95616, USA XX DR MD5; 725d7fb5b88c381f42e9be694a9b13a7. DR EuropePMC; PMC3648196; 23468482. XX FH Key Location/Qualifiers FH FT source 1..2589 FT /organism="Tomato leaf deformation virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="PA98-1-1" FT /mol_type="genomic DNA" FT /country="Peru:Ica" FT /collection_date="Dec-1998" FT /db_xref="taxon:681518" FT gene 174..929 FT /gene="V1" FT CDS 174..929 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /db_xref="GOA:K4NZL0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4NZL0" FT /protein_id="AFV52550.1" FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY FT RKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRSYFYDSITN" FT gene complement(507..824) FT /gene="C5" FT CDS complement(507..824) FT /codon_start=1 FT /gene="C5" FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:K4NZL5" FT /protein_id="AFV52555.1" FT /translation="MVLVFPSFLMVVDHMVVDLPKAPHQSLLVTGILTPRDLSIEPMHN FT LKTISKIVLHGGSTGLIVEHVEHLAKVHGSAIGSPVSDQPEHDTVSVVLQLDILVHPYF FT T" FT gene complement(926..1324) FT /gene="C3" FT CDS complement(926..1324) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:K4PD76" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4PD76" FT /protein_id="AFV52553.1" FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHDVEDILSTTTRVY FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINN FT VIRSVRFATDKPYVNHVLQNHSIKIKLY" FT gene complement(1071..1460) FT /gene="C2" FT CDS complement(1071..1460) FT /codon_start=1 FT /gene="C2" FT /product="TrAP" FT /db_xref="GOA:K4NZZ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4NZZ9" FT /protein_id="AFV52552.1" FT /translation="MQNSSSSTPPSIKPRHKIAKAKPIRRKRIDLDCGCSFFLHINCVN FT NGFTHRGEHHCASGREFRFYLGGTKSPLFQDTRRGGHTVHNDESIPHPNPVQPQPEEGA FT STTQSLLELPSLDDISSSFWDDIFK" FT gene complement(1411..2457) FT /gene="C1" FT CDS complement(1411..2457) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:K4P282" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4P282" FT /protein_id="AFV52551.1" FT /translation="MPPPKAFKINAKNYFLTYPQCNLTKEEALSQLQNLETPTNKKYIK FT IARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYV FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFH FT NLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG FT CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLDKEENAALRAWTLHNAKFIFLN FT SSLYQTEA" FT gene complement(2043..2300) FT /gene="C4" FT CDS complement(2043..2300) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4P248" FT /protein_id="AFV52554.1" FT /translation="MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPA FT PTSTPTSTRTEIHSNGENSKSTAEVLEEAAKLLTTLPQKP" XX SQ Sequence 2589 BP; 664 A; 535 C; 600 G; 790 T; 0 other; accggatggc cgcacgattt tttacccccc tgttaatttt gggaccacac acatacggac 60 aaaacctttt gtccaatcat ggagcgtctg acgagcttaa ttattaattc ctttagactg 120 agtggtctat aaagacccag acaaactgta ataattgata tctttaactc aaaatgccta 180 agcgcgatgc cccatggcgc ttaatggcgg ggacctcaaa gattagccgt acttccaatt 240 attcacccag aggaggtatg ggccctaagt tcgacaagaa tgcggcctgg gtaaacaggc 300 ccatgtacag gaagcccaga gtataccggg ttttaagagg cccagatgtt cccaagggct 360 gtgaggggcc ctgtaaggtc cagtcattcg agcagcgtca cgatatctcc catattggca 420 aggtcatgtg tatatccgat gttacccgtg gtaacggtat tacccaccga gtgggtaagc 480 gtttctgtgt gaagtccgtc tatattttag gtaaaatatg gatggacgag aatatcaagt 540 tgaagaacca cactaacagt gtcatgttct ggttggtcag agaccggaga ccctatggca 600 ctcccatgga ctttggccag gtgttcaaca tgttcgacaa tgagcccagt actgccaccg 660 tgaagaacga tcttcgagat cgttttcagg ttatgcatag gttctatgct aaggtcacgg 720 ggggtcagta tgccagtaac gagcaggctc tggtgaggcg cttttggaag gtcaacaacc 780 atgtggtcta caaccatcag gaagctggga aatacgagaa ccatacggag aacgccctat 840 tattgtacat ggcatgtact catgcctcta accctgtgta tgctacgttg aaaatacgta 900 gctattttta tgattctata acaaattaat aaagtttaat ttttattgaa tgattctgaa 960 gtacatgatt tacatatggt ttatctgttg caaaccgaac agatctaatt acattgttaa 1020 ttgaaataac tcctaaatta tctaagtaaa ataaaactaa atgtctaaat ctatttaaat 1080 atgtcgtccc agaagcttga actgatgtcg tccagacttg gaagttcaag aaggctttgt 1140 gtagttgaag cgccttcctc aggttgtggt tgaaccggat ttggatgtgg tatactctcg 1200 tcgttgtgga cagtatgtcc tccacgtcgt gtatcttgaa ataaagggga tttggtacct 1260 cccagataaa aacggaattc tctgcctgat gcacagtgat gttctccccg gtgcgtgaat 1320 ccattattaa cacagttaat atgcaggaag aatgagcagc cacagtctag gtctatgcgt 1380 ttccttctga tgggctttgc cttggcaatc ttatgcctcg gtttgataga gggaggagtt 1440 gaggaagatg aattttgcat tgtggagtgt ccacgctctt agagctgcat tttcctcttt 1500 gtcaaggaag tctttatagc tctgtccctc tcctggattg cagagcacga tagagggtat 1560 gccaccttta atttgaattg gctttccgta tttacagttt gattgccaat ccttctgggc 1620 ccctatcagc tctttccaat gtttcatctt taaatattgc ggactgacgt catcaatgac 1680 gttatagtcc gctccatttg aataaacttt ggaattaaaa tccaggtgtc cactcagata 1740 attatgtggg cctagtgcac gagcccacat agtcttccct gtccttgaac acccctctat 1800 tattatactg ataggtcttt ctggccgcgc agcggcaccc ctaccaaaat aatcatcagc 1860 ccattcttgc atctcctccg ggacgttagt gaaggaggag agtggaaacg gaggagacca 1920 tggctccgga gccttcgaaa aaattttatc taaattacaa tttaaattat gaaattgaaa 1980 taaatatttt tcagggagtt tctcccttat tatttggagg gctgcttctt tgctaccgct 2040 atttaaggct tctgcggcag cgtcgttagc agtttggcag cctcctctag cacttctgcc 2100 gtcgacttgg aattctcccc attcgagtgt atctccgtcc ttgtcgacgt aggcgttgac 2160 gtcggtgctg gatttagctc cctgaacgtt cggatggaaa tgtgttgacc tggttgggga 2220 taccaggtcg aagaatctgt tattcttaca ttggaatttg ccttggaact ggagtagcac 2280 gtggagatga tgttgcccat cttcgtgaag ctcccttgca attttgatat atttcttatt 2340 tgtgggtgtc tctaggtttt gcaattggga aagtgcttct tctttggtta aattgcactg 2400 gggatatgta agaaaataat tttttgcatt tatcttaaag gccttaggtg ggggcatttt 2460 ggtaataaat attttggaca ccgattggtt tggcttgtaa aacttattgc aatcggtgta 2520 ctggagtctt atttatagta ggagttccta aaggatttag caacacgtgg cggccatccg 2580 tataatatt 2589 //