Dbfetch
ID JX487184; SV 1; circular; genomic DNA; STD; VRL; 2931 BP. XX AC JX487184; XX DT 24-OCT-2012 (Rel. 114, Created) DT 01-MAY-2014 (Rel. 120, Last updated, Version 2) XX DE Beet curly top virus isolate California-BV3, complete genome. XX KW . XX OS Beet curly top virus OC Viruses; Geminiviridae; Curtovirus. XX RN [1] RP 1-2931 RA Chen L.-F., Creamer R., Gilbertson R.L.; RT "Evidence that recombination plays an important role in the evolution and RT emergence of new curtoviruses (family Geminiviridae)"; RL Unpublished. XX RN [2] RP 1-2931 RA Chen L.-F., Gilbertson R.L.; RT ; RL Submitted (14-AUG-2012) to the INSDC. RL Plant Pathology, UC Davis, One Shields Ave, Davis, CA 95616, USA XX DR MD5; 2b6f4efb536c2f6437b042e6b50d7fe5. XX FH Key Location/Qualifiers FH FT source 1..2931 FT /organism="Beet curly top virus" FT /host="Solanum lycopersicum" FT /isolate="California-BV3" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2009" FT /db_xref="taxon:10840" FT gene 255..521 FT /gene="V3" FT CDS 255..521 FT /codon_start=1 FT /gene="V3" FT /product="V3" FT /note="putative movement protein" FT /db_xref="InterPro:IPR009997" FT /db_xref="UniProtKB/TrEMBL:K4MTJ5" FT /protein_id="AFV31437.1" FT /translation="MMVCMPDWLFLIFTFSIIIQGGTNVYGTLQSGSISRQLSKISCRC FT DELFVKLQQILYPRRVSRDQAADNRRSRGLSSIPEGREEDTEA" FT gene 331..651 FT /gene="V2" FT CDS 331..651 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /note="ss-ds DNA regulator" FT /db_xref="InterPro:IPR009931" FT /db_xref="UniProtKB/TrEMBL:K4MRG2" FT /protein_id="AFV31438.1" FT /translation="MGPYRVDQFPDSYPRFLAAATSCLLSYNKSCIQGVSREIKPLTIE FT EAEAFLQFQKDVKKILRRKCSFQVKKALYVEVYKRYVPDVAKEEGDFSKGVAQEKENDN FT HY" FT gene 551..1315 FT /gene="V1" FT CDS 551..1315 FT /codon_start=1 FT /gene="V1" FT /product="V1" FT /note="capsid protein" FT /db_xref="GOA:K4N451" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:K4N451" FT /protein_id="AFV31439.1" FT /translation="MSRFTKGTFQMSQKRKGTFQRAWPKKRKTTTTTKKYQWRRPLTRG FT RMLKLKMYDDMLGGGGVGTTISNNGMITMLNNYVQGIGDSQRANNITVTKHLKFDMALM FT GSSAFWETPNYMTQYHWIIVDKDVGSVFPTKLSTIFDIPDNGQAMPSTYRIRRDMNERF FT IVKKKWTTHLMSTGTGYGGKETYKAPSMPNYKKPMNMSVRNLNIKTIWKDSGGGKYEDV FT KENAIIYVVVNDNSDNTNMYATLFGNCRCYFY" FT gene complement(1349..1759) FT /gene="C3" FT CDS complement(1349..1759) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /note="replication enhancer" FT /db_xref="GOA:K4MT56" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4MT56" FT /protein_id="AFV31440.1" FT /translation="MNVIRDFRTEEPITLQQATNSIPVDLVPNPLYLKLQEFFRSGPVY FT QLKVQIRFNHNLRKYLNLHKCWIDLTITGSHRTLTGDRFLRALKNQLDWVLERQSSISI FT NKIIRIFNYILYKRFNFVSSVIQKTSIAMKLY" FT gene complement(1446..1889) FT /gene="C2" FT CDS complement(1446..1889) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:K4MQL8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4MQL8" FT /protein_id="AFV31441.1" FT /translation="MKPLGPGHYKIQSSPNSQVLSLITIKKRPRKINLPCKCHFTIHHE FT CNQGFSHRGTHYAATSDEFHTRGLGTESIVPQTPGILPLRASLSTESPDKIQPQPPQIL FT ESSQVLDRFDDHWITQDIDWRPFFESLEEPTGLGTGASIFNLD" FT gene complement(1780..2844) FT /gene="C1" FT CDS complement(1780..2844) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:K4MTJ8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4MTJ8" FT /protein_id="AFV31442.1" FT /translation="MPFYKKAKNFFLTYPQCSVTKEDALEQLLAINTPSNKKYIRICRE FT LHENGEPHLHALIQFEGKVQIRNARYFDLQHRSTSKQFHCNIQGAKSSSDVKSYVSKDG FT DHIDWGEFQVDGRSARGGQQTANDAAAEALNAGNALEALQIIREKLPEKFIFQYHNLKP FT NLEAIFLPPPDIYQPPFPLSSFTRVPENIQEWADSYFGLDPAARPYRYNSIIIEGDSRT FT GKTMWARCLGPHNYITGHLDFSLKTYSDNVLYNVIDDVDPNYLKMKHWKHLIGAQREWQ FT TNLKYGKPRVIKGGIPSIILCNPGEGSSYQDFLNKSENEALRSWTLQNSVFAKLTSPLF FT DNNQEASSQDQSSL" FT gene complement(2442..2705) FT /gene="C4" FT CDS complement(2442..2705) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4MRG7" FT /protein_id="AFV31443.1" FT /translation="MKMGNHICMPLFNSKEKSRSVMPVTSICNIEVPANNSTAIFRELN FT PVPTSSPTSQRTEITSTGVNFRSMEDLHAEVNRRLMMLQQRH" XX SQ Sequence 2931 BP; 851 A; 518 C; 648 G; 914 T; 0 other; accggatggc cccaaaaaaa aattggcacc caattataaa acgacacgtg taatcgcact 60 atgtgagatg tgaacatttt aggcgggaaa cttctcttag aagttttcaa ttaaactttt 120 gactggtcaa aagttgttgc cgacaagtcc tttttttttt gaaaataaag ttgctttcac 180 attacaaact tgctgtccaa gtttgttatc ttttagtatt taaataagta tatgtaccgt 240 attggtacat ataaatgatg gtctgcatgc cagactggtt atttctaatc tttacattta 300 gcatcattat tcagggtggt acgaacgttt atgggacctt acagagtgga tcaatttccc 360 gacagttatc caagatttct tgccgctgcg acgagttgtt tgttaagtta caacaaatct 420 tgtatccaag gcgtgtctcg agagatcaag ccgctgacaa tcgaagaagc cgaggccttt 480 cttcaattcc agaaggacgt gaagaagata ctgaggcgta agtgttcttt tcaagtgaag 540 aaggcattat atgtcgaggt ttacaaaagg tacgttccag atgtcgcaaa agaggaaggg 600 gacttttcaa agggcgtggc ccaagaaaag gaaaacgaca accactacta agaagtatca 660 gtggagacgt cctctcacga gggggaggat gttgaagtta aagatgtatg atgacatgct 720 gggcggtgga ggtgtcggta ctactattag taataatgga atgattacta tgctcaacaa 780 ttacgttcaa ggaattggtg atagtcagag agccaacaat ataaccgtca ctaaacattt 840 gaagtttgac atggccctta tgggcagttc tgcgttttgg gagactccaa attatatgac 900 acaataccat tggataatcg tcgataagga tgttgggtcc gttttcccta caaagttgtc 960 tactatattt gatattccag ataacggtca ggcgatgccg tctacataca ggatccggcg 1020 tgatatgaat gagaggttta ttgtgaagaa gaaatggaca actcatttga tgtctactgg 1080 tactggttat ggaggaaagg agacttacaa ggctccttct atgcctaatt acaagaagcc 1140 gatgaatatg agtgttcgta acctgaatat caagactatc tggaaagata gtggtggtgg 1200 aaagtatgag gatgtgaagg aaaatgctat catatatgtt gttgtaaacg ataatagtga 1260 taacacgaat atgtatgcta ctttgtttgg caactgtcgt tgctacttct attaataaaa 1320 tcatatttta tttattattg aaattacatt agtacaattt cattgcaata cttgtttttt 1380 ggattacact actgacgaaa ttgaaacgct tatacaatat ataattgaaa atacgaataa 1440 ttttattaat cgagattgaa gattgacgct ccagtaccca atccagttgg ttcttcaagg 1500 ctctcaaaaa acggtctcca gtcaatgtcc tgtgtgatcc agtgatcgtc aaatctatcc 1560 agcacttgtg aagattcaag tatttgcgga ggttgtggtt gaatcttatc tggactttca 1620 gttgataaac tggcccggag cggaagaatt cctggagttt gaggtacaat ggattcggta 1680 ccaagtccac gggtatggaa ttcgtcgctt gttgcagcgt aatgggttcc tctgtgcgaa 1740 aatccctgat tacattcatg atgaattgtg aaatgacact tacaaggaag attgatcttg 1800 cgaggacgct tcttgattgt tatcaaagag aggacttgtg agtttggcga agactgaatt 1860 ttgtaatgtc caggacctaa gggcttcatt ttctgattta ttgaggaagt cctggtaaga 1920 gcttccttcc cctggattgc ataatataat actgggaata ccacctttta tgacacgtgg 1980 ttttccatac tttaagtttg tctgccactc tctttgtgcg cctataaggt gcttccaatg 2040 cttcatcttt aagtaattgg gatctacgtc atcaatgacg ttgtacaaaa cattatcact 2100 ataagttttt aaactaaaat ctaaatgacc agtaatataa ttatgtggac ctaaacacct 2160 ggcccacatt gttttaccag ttcttgaatc accctctatg attatactat tatatctata 2220 cggccgcgca gcgggatcta aaccaaaata agaatcggcc cactcttgaa tattttctgg 2280 aactcgagtg aaagaagaaa gaggaaaggg tggttgataa atatctggag gaggaagaaa 2340 aatagcctct aggttaggtt tgaggttgtg gtactgaaaa ataaattttt ctgggagttt 2400 ctcccttatt atctgcagag cttctaatgc attacctgca tttaatgcct ctgctgcagc 2460 atcattagcc gtctgttgac ctccgcgtgc agatcttcca tcgacctgaa attcacccca 2520 gtcgatgtga tctccgtcct ttgagacgta ggacttgacg tcggaactgg atttagctcc 2580 ctgaatattg cagtggaatt gtttgctggt acttcgatgt tgcagatcga agtaacgggc 2640 attacggatc tggacttttc cttcgaattg aataagggca tgcagatgtg gttccccatt 2700 ttcatgtaat tctctgcaga tgcgaatata ttttttattc gaaggtgtat ttatagcgag 2760 gagctgttct aaggcgtctt ctttggttac tgaacattga gggtatgtaa ggaaaaaatt 2820 tttggctttt ttgtaaaaag gcatattgaa tcgggctctc ttcaaatctc ctatcaattg 2880 ggtgctatgg gtgctcttaa ataccacaaa ggggccatcc gcaataatat t 2931 //