ID JX460805; SV 1; linear; genomic DNA; STD; VRL; 2730 BP. XX AC JX460805; XX DT 23-OCT-2012 (Rel. 114, Created) DT 23-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Tomato leaf curl New Delhi Virus [India:New Delhi:2012] movement protein DE (V3), movement protein (V2), V1 (AV1), c5 (c5), c3 (c3), TrAp (TrAp), and DE C1 protein (Rep) genes, complete cds; and nonfunctional c4 (c4) gene, DE complete sequence. XX KW . XX OS Tomato leaf curl New Delhi Virus [India:New Delhi:2012] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2730 RA Kumar A., Sarin N.B.; RT "Tomato leaf curl virus infection tomato in India"; RL Unpublished. XX RN [2] RP 1-2730 RA Kumar A., Sarin N.B.; RT ; RL Submitted (03-AUG-2012) to the INSDC. RL School of Life Sciences, Jawaharlal nehru University, New Mehrauli Road, RL New Delhi, Delhi 110067, India XX DR MD5; db0976b205d8e2def35cfb8fe69614bd. XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Tomato leaf curl New Delhi Virus [India:New FT Delhi:2012]" FT /host="tomato" FT /isolate="ToLCNDV-[ABH-NBS-JNU]" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf tissue" FT /collection_date="May-2012" FT /identified_by="Abhinav Kumar" FT /db_xref="taxon:1239416" FT gene 48..434 FT /gene="V3" FT CDS 48..434 FT /codon_start=1 FT /gene="V3" FT /product="movement protein" FT /db_xref="UniProtKB/TrEMBL:K4LQZ9" FT /protein_id="AFV14765.1" FT /translation="MKFTLHGLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVH FT ASCKISPRDRKELFTRHSRLRSYSRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLHASPKQRPGPTGR" FT gene 127..465 FT /gene="V2" FT CDS 127..465 FT /codon_start=1 FT /gene="V2" FT /product="movement protein" FT /db_xref="GOA:K4LNP1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K4LNP1" FT /protein_id="AFV14766.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCTRHQSKGLDQQADEQ FT KTQNVQNV" FT gene 287..1057 FT /gene="AV1" FT CDS 287..1057 FT /codon_start=1 FT /gene="AV1" FT /product="V1" FT /note="Movement and encapcidation" FT /db_xref="GOA:K4M3G2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4M3G2" FT /protein_id="AFV14767.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLVRDRRPTGSPQDFGEVFNMFDNEP FT STAIVRNMHRDRYQVLRKWHATVTGGRYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYIYDSVSN" FT gene complement(317..679) FT /gene="c5" FT CDS complement(317..679) FT /codon_start=1 FT /gene="c5" FT /product="c5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:K4LR37" FT /protein_id="AFV14768.1" FT /translation="MVFCLDVFIHPYLSQHIDRFHTESLPYAMCESSSSGNITNTHDFA FT NMRDIVPRFKGLHFTRAFTAPWHVGTSIHSVHSGFSVHRPVGPGLCFGDACNGDNCTSS FT IGAVEVETSAYLRCGR" FT gene complement(1054..1464) FT /gene="c3" FT CDS complement(1054..1464) FT /codon_start=1 FT /gene="c3" FT /product="c3" FT /note="replication enhancer protein" FT /db_xref="GOA:K4LNC7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4LNC7" FT /protein_id="AFV14769.1" FT /translation="MITDSRTGEYITADRAESGVYTREIRNPLYFKILKHDSRPFLTQH FT DIITVQIQFNHNLRKALGLHKCFLTFKIWTGLRPQTGHFLRVFRTQVLQYLNNFAVISI FT NNVLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1199..1603) FT /gene="TrAp" FT CDS complement(1199..1603) FT /codon_start=1 FT /gene="TrAp" FT /product="TrAp" FT /note="transcription activator protein" FT /db_xref="GOA:K4LR03" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4LR03" FT /protein_id="AFV14770.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYPGNSKSPVFQNFETRQQALPNTARHNHGSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWSFLKGI" FT gene complement(1506..2591) FT /gene="Rep" FT CDS complement(1506..2591) FT /codon_start=1 FT /gene="Rep" FT /product="C1 protein" FT /note="helps in replication" FT /db_xref="GOA:K4LNP6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4LNP6" FT /protein_id="AFV14771.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGVISASDVKKYI FT DKDGDVLEWCVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPAELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2258..2434) FT /gene="c4" FT misc_feature complement(2258..2434) FT /gene="c4" FT /note="nonfunctional c4 due to mutation" XX SQ Sequence 2730 BP; 743 A; 576 C; 618 G; 793 T; 0 other; taatattacc gaatggccgc gcaaattttt aggtgggccc tcaaccaatg aaattcacgc 60 tacatggcct atttagtgcg tggggatcaa taaatagact tgctcaccaa gtttggatcc 120 acaaacatgt gggatccatt attgcacgaa tttcccgaaa gcgttcatgg tctaaggtgc 180 atgctagctg taaaatatct ccaagagata gaaaagaact attcaccaga cacagtcggc 240 tacgatctta ttcgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaggtacgc cgacgtctca acttcgacag 360 cccctatgga gctcgtgcag ttgtccccat tgcacgcgtc accaaagcaa aggcctggac 420 caacaggccg atgaacagaa aacccagaat gtacagaatg tatagaagtc ccgacgtgcc 480 aaggggctgt gaaggccctt gtaaagtgca gtcctttgaa tctaggcacg atgtctctca 540 tattggcaaa gtcatgtgtg ttagtgatgt tacccgagga actggactca cacatcgcgt 600 agggaagcga ttctgtgtga aatctgtcta tgtgctggga aagatatgga tggatgaaaa 660 catcaagaca aaaaaccata ctaacagtgt catgttattt ctggttcgtg accgtcgtcc 720 tacaggatct ccacaagatt ttggagaggt gttcaacatg tttgacaacg agcctagcac 780 tgccattgtg aggaatatgc atagagatcg ttatcaggtt ttgaggaaat ggcacgcaac 840 ggttactggt ggacggtacg cgtcgaagga acaggcatta gttaagaagt tcgttagggt 900 taataattat gttgtgtata accagcaaga agctggtaaa tatgagaatc atagtgagaa 960 tgcattgatg ttgtacatgg cgtgtacgca cgcctctaat cccgtgtatg ctaccttaaa 1020 gatacggatc tatatctatg attcagtatc gaattaataa agattgaatt ttattatatt 1080 tgaactttgt acatgaatcg tttgtgctaa tacattccat aatacatggt tgacagctct 1140 aagtacattg tttatactaa ttacagcaaa attatttaaa tactgcaaca cttgggtcct 1200 aaataccctt aagaaatgac cagtctgagg gcgtaagccc gtccagattt tgaaagttag 1260 aaaacacttg tgaagtccca gggctttccg caggttgtgg ttgaactgta tttgaaccgt 1320 gattatgtcg tgctgtgtta ggaagggcct gctgtcgtgt ttcaaaattt tgaaatacag 1380 gggatttcga atttcccggg tatatacgcc actctctgct cgatccgcag tgatgtattc 1440 ccctgtgcgt gaatccgtga tcatggcagt tgatcgatat gtaatacgaa caaccacacg 1500 gcagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgggggagc gatgttttcg 1560 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat tgcccactgc 1620 ttcagtgctg catttttttc ttcatccaga tattccttat agctgctgtt tggaccttta 1680 ttgcacagga agatagtggg aattccacct ttaatcatga ccggctttcc gtacttcgtg 1740 ttgctttgcc agtcacgctg ggcccccatg aattctttaa aatgctttag atagtgggga 1800 tcgacgtcat caatgacgtt gtaccaggca tcattgctat atacctttgg gctcagatca 1860 agatgtccac acaagtaatt gtgtggtcct aagcatcgag cccacattgt tttgcccgtc 1920 ctactatccc cctctatgac tatgcttatg ggcctaaaag gccgcgcagc ggcacacaca 1980 acattagacg agacccaatc gacgagttct gccggaactc tgtcgaagga tgaaattgaa 2040 aatggagaaa cataaacctc ggaaggaggt tgaaaaatac gatctaaatt ggtatttaaa 2100 ttgtgaaact gcagaacgta atcctttggg gctaattcct ttaatactct caaagcgtcg 2160 tctttatttc ccgtgttaat cgcctgggca tatgcatcgt ttgccgtttg ttgaccacca 2220 cgggcagatc gtccatcgat ctggaaaaca caccattcta gaacgtctcc gtctttgtcg 2280 atatatttct tgacgtccga cgctgatatt actccctgaa tgttcggatg gaaatgtgct 2340 gaccgacttg gggaaaccaa gtcgaagaat ctgttatttt tgcactggaa tttcccttcg 2400 aattggatga gaacatggat atgcggagac ccatcttcgt gaagctctct acagatcttg 2460 atgaatttct tcttcgtcgg ggtttctagg gtttgcaatt gggagagtgc ctcttcttta 2520 gttagagagc actttggata tgtgaggaaa tagtttttgg catttactct aaaacgacgt 2580 ggcgaagcca taaaacttgt cgttttgatt cggcgtccct caacttatct atatgattgg 2640 tgtctggagt cctatatata ggtaagacac catatggcat tattgtatat ttgaaaagaa 2700 aattacttta attcaaattc cctaaagcgc 2730 //