Dbfetch
ID JX457342; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC JX457342; XX DT 15-OCT-2012 (Rel. 114, Created) DT 15-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Tobacco curly shoot virus clone TCb1, complete genome. XX KW . XX OS Tobacco curly shoot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Swarnalatha P., Krishna Reddy M., Kanakala S., Jalali S.; RT "Molecular characterization of Tobacco curly shoot virus infecting tomato RT in India"; RL Unpublished. XX RN [2] RP 1-2758 RA Swarnalatha P., Krishna Reddy M., Kanakala S., Jalali S.; RT ; RL Submitted (03-AUG-2012) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessarghatta Lake Post, Bangalore, Karnataka 560089, India XX DR MD5; ff37fcefd0d1e30f1768d25894cf5574. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Tobacco curly shoot virus" FT /host="tomato" FT /isolate="TC366" FT /mol_type="genomic DNA" FT /country="India:Pantnagar, Uttarakand" FT /isolation_source="infected leaf" FT /collected_by="Dr. M. Krishna Reddy" FT /collection_date="18-Jan-2012" FT /clone="TCb1" FT /db_xref="taxon:180526" FT CDS 146..493 FT /codon_start=1 FT /product="pre-coat AC4 protein" FT /note="AV2" FT /db_xref="GOA:J7I203" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:J7I203" FT /protein_id="AFU74020.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKSYSPDTLGHDLIRDL FT ISVIRAKNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQIKSMGEQAHEQ FT KAQDVQDVQKS" FT CDS 306..1076 FT /codon_start=1 FT /product="coat AC4 protein" FT /note="AV1" FT /db_xref="GOA:J7I200" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:J7I200" FT /protein_id="AFU74021.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKSRAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1073..1477) FT /codon_start=1 FT /product="replication enhancer AC4 protein" FT /note="AC3" FT /db_xref="GOA:K4IST8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4IST8" FT /protein_id="AFU74024.1" FT /translation="MDSRTGELITAAQAENGVYIWEIQNPLYFKIIEHQNRPFLMKEDI FT ITIRIQFNYNLRKALGVHKCFLVFRIWMTSQPPTGQFLRVFKTQVFKYLHNLGIISINN FT VIRAVDHVLWNRLEHIVYVHQSYSIKFNIY" FT CDS complement(1218..1622) FT /codon_start=1 FT /product="transcription activator AC4 protein" FT /note="AC2" FT /db_xref="GOA:K4IWV1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4IWV1" FT /protein_id="AFU74023.1" FT /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPLFQDNRAPEPAISHERRHNHHPNTVQLQP FT TESSGSAQVFSSLPNLDDFTASDWSILKGL" FT CDS complement(1525..2610) FT /codon_start=1 FT /product="replication associated AC4 protein" FT /note="AC1" FT /db_xref="GOA:J7I5T4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7I5T4" FT /protein_id="AFU74022.1" FT /translation="MPQPKKFLINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDYVLQFH FT NLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELEEWAVENIVSAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYNNHAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNKALKIWSLKNAIFVTLESPL FT YSGSNQSEAQASQEGEQTSTC" FT CDS complement(2160..2582) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:J7I574" FT /protein_id="AFU74025.1" FT /translation="MPRIISSLIHSAPLLKKRHFPKSQPYQPRLINYSYVFAGNYTKMG FT LLTCMSSSSSKANSNAKTTDSSISHPQAGQHISIRTFRELKAQQMLKHTWKKTETSLIM FT EFSRSMEDQLEEVANLPTTHMPRQSIQGPKQRPSIY" XX SQ Sequence 2758 BP; 764 A; 516 C; 620 G; 858 T; 0 other; accggatggc cgcgattttt tttaagtggt ccccacaacg ctctaactga caaagacatg 60 tccaccaatc taaatcgtcg ctcaaagctt aattgtgttg tggtccctta tttaaacgtg 120 ctcagcaagt agtgcactcc gcactatgtg ggatccatta gttaacgagt ttcccgaaac 180 cgtacacggc tttaggtgta tgttagcagt gaaatatctg cagttagtag agaagagtta 240 ttcgcctgat acattagggc acgatttaat tagggattta atttcagtta ttagggctaa 300 aaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcttcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccatatgtga gccgtgctgc tgcccccatt gtccgcgtca 420 ccaaatcaag agcatgggcg aacaggccca tgaacagaaa gcccaggatg tacaggatgt 480 acagaagtcc tgatgtccct agaggatgtg aaggtccatg taaggtccag tcttttgagt 540 ctagacatga cattcagcat ataggtaaag ttatgtgtgt cagtgatgtt acgcgtggaa 600 ctgggctgac tcatcgagtg ggtaaaaggt tttgtgttaa atccgtttat gtcttgggta 660 agatctggat ggatgaaaat attaagacca agaaccacac taacagtgtt atgttttttt 720 tagttaggga tcgtaggcct gtggataagc ctcaagattt tggagaagtt tttaacatgt 780 ttgataatga gcccagtacg gctactgtga agaatgttca tcgtgatagg tatcaagtgc 840 ttcggaaatg gcatgcaact gttacgggtg gacaatatgc gtcaaaggaa caagctcttg 900 tgaagaagtt tgttagggtt aataattatg ttgtgtataa tcagcaagaa gctggcaagt 960 atgagaatca ttctgagaat gcgttaatgt tgtatatggc atgtactcat gcctctaacc 1020 cagtgtatgc tactttgaag atacggatct atttctatga ttccgtaaca aattaataaa 1080 tgttaaattt tattgaataa gattggtgta catatacaat gtgttctaat ctattccata 1140 atacatgatc aactgcacga attacattat taatactgat aattcctaaa ttatgtaaat 1200 atttaaaaac ttgagtctta aagaccctta agaattgacc agtcggaggc tgtgaagtca 1260 tccagattcg gaagactaga aaacacttgt gcactcccag agctttccgt aggttgtagt 1320 tgaactgtat tcggatggtg attatgtctt ctttcatgag aaatggccgg ttctggtgct 1380 ctattatctt gaaataaagg ggattttgaa tctcccagat atacacgcca ttctctgctt 1440 gagctgcagt gatgagttcc cctgtgcgtg aatccatgat cgtgacaggc tagtgctatg 1500 aaatatgaac atccacaagg gagatcaaca cgtcgacgtc tgttcccctt cttggctagc 1560 ctgtgcttca ctttgattgg aacctgagta gagtgggctt tcgagggtga cgaagatcgc 1620 attctttaaa gaccaaattt taagtgcttt atttttctct tcatccaaga attctttata 1680 gctagagttg ggtcctggat tgcagaggaa gatagtggga attccacctt taatttgaac 1740 tggctttccg tactttgtat ttgattgcca gtctttttgg gcgcccatga attctttaaa 1800 gtgctttaaa tagtgcggat ctacgtcatc aatgacgttg taccaagcat gattattgta 1860 cactctaggg cttagatcta aatgaccaca caagtaatta tgtggtccca gtgatcgtgc 1920 ccacatcgtc tttcctgttc tactatcacc ttcaattact atactcatgg gtctcaatgg 1980 ccgcgcagct gcactgacga tattctcgac agcccattcc tcaagttctt ctggaacttg 2040 atcgaaagaa gaagataaaa aaggagaaat gtattcctct atcggaggag taaaaatcct 2100 atctaaatta gaatttaaat tatgaaattg taatacataa tctttaggag ctttctcctt 2160 taatatattg agggccgctg ctttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct tccatcgatc tggaaaactc catgatcaag 2280 gacgtctccg tctttttcca tgtatgcttt aacatctgtt gagcttttag ctccctgaat 2340 gttcggatgg aaatgtgctg acctgcttgg ggatgtgaga tcgaagaatc tgttgttttg 2400 gcatttgaat ttgccttcga actggatgag gacatgcagg tgaggagacc catcttcgtg 2460 tagttccctg caaatacgta tgaataattt attagtcggg gttgataggg ctgagatttg 2520 ggaaagtgcc tcttctttag taagggagca ctgtggataa gtgaggaaat aattcttggc 2580 atttattaaa aattttttag gctgaggcat attgactggt caatcgggtc ctctcaaact 2640 tggctatgca atcggggaat gggtccttat ttatagttga ggacctaaat ggcattttcg 2700 taaatatgga aatgtaattg aaaattcaaa atctaaaagc ggccatccgt ataatatt 2758 //