ID   JX444577; SV 1; circular; genomic DNA; STD; VRL; 2637 BP.
XX
AC   JX444577;
XX
DT   03-OCT-2012 (Rel. 114, Created)
DT   28-MAR-2013 (Rel. 116, Last updated, Version 2)
XX
DE   Squash leaf curl virus isolate Homra segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Squash leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2637
RA   Haj Ahmad F., Odeh W., Anfoka G.;
RT   "First Report on the Association of Squash leaf curl virus and Watermelon
RT   chlorotic stunt virus with Tomato Yellow Leaf Curl Disease";
RL   Plant Dis. 97(3):428-428(2013).
XX
RN   [2]
RP   1-2637
RA   Anfoka G.H., Haj Ahmad F.W.;
RT   ;
RL   Submitted (30-JUL-2012) to the INSDC.
RL   Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa'
RL   Applied University, Al-Salt 19117, Jordan
XX
DR   MD5; 738aea3af97d893001e0f63676c2716b.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLC Main Workbench v. 6.6.2
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2637
FT                   /organism="Squash leaf curl virus"
FT                   /segment="DNA-A"
FT                   /host="tomato"
FT                   /isolate="Homra"
FT                   /mol_type="genomic DNA"
FT                   /country="Jordan"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:10829"
FT   CDS             212..967
FT                   /codon_start=1
FT                   /product="AV1"
FT                   /db_xref="GOA:K0E4B8"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:K0E4B8"
FT                   /protein_id="AFT90674.1"
FT                   /translation="MVKRDAPWCLMAGTSKVSRSANFSPRGGMGPRFNKAAAWVNRPMY
FT                   RKPRIYRTMRGPDIPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATI
FT                   KNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(964..1368)
FT                   /codon_start=1
FT                   /product="AC3"
FT                   /db_xref="GOA:K0E0D3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:K0E0D3"
FT                   /protein_id="AFT90675.1"
FT                   /translation="MVMDLRTWDDITVHQAENSVFIWEVPNPLYFKMYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAFLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVIGL
FT                   NNVIRAVSWSTDRSYVNYVLENHEIKFKIY"
FT   CDS             complement(1109..1633)
FT                   /codon_start=1
FT                   /product="AC2"
FT                   /db_xref="GOA:J7HKL5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:J7HKL5"
FT                   /protein_id="AFT90676.1"
FT                   /translation="MESRFKLKVESHQSCCAILERGPVIKISSTKPRTRHYESGLKKMP
FT                   NSSSSKVPSIKAQHRIAKKRAVRRRRIDLDCGCSIYIHINCAKDGNGFTHMGRHHCASG
FT                   REFRFYLGGSKSPLFQDVQRGGSTLHAHKDIPHSNPVQPQPEESTKSSQSVPELPSLDG
FT                   IDSSFWDDIFE"
FT   CDS             complement(1446..2492)
FT                   /codon_start=1
FT                   /product="AC1"
FT                   /db_xref="GOA:K0E1L7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:K0E1L7"
FT                   /protein_id="AFT90677.1"
FT                   /translation="MPRNPNSFRLTARNIFLTYPRCDVPKEEVLEMLLHLSWSVVKPNY
FT                   IRVAREEHSDGSPHLHCLIQLSGKSNIKDAGFFDLTHPRRSARFHPNIQAAKDTNAVKN
FT                   YITKEGDYCESGQYKVSGGSKSNKDDVYHNAVNAGSAGEALEIIKAGDPKTFIVNYHNL
FT                   LANVERLFQKPPEPWVPPFEISSFTSVPEELQDWADDYFNECSAARPRPTSIIIEGGSR
FT                   TGKTMWARSLGPHNYLSGHLDFNSRVFSNDVKYNVIDDVAPHYLKLKHWKELIGAQRDW
FT                   QSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENSALREWTEKNAKFIFLEGPL
FT                   YQSSAQDC"
FT   CDS             complement(2048..2425)
FT                   /codon_start=1
FT                   /product="AC4"
FT                   /db_xref="UniProtKB/TrEMBL:C3V6N8"
FT                   /protein_id="AFT90678.1"
FT                   /translation="MFPKKKFLRCFCISRGQSSNRITLESPERNIPTGLRTYTASFNYL
FT                   ENPTSRMLDFSTSLTPDGLPDFTRTFRLPKTPTPSRTTSPKKVIIVNPGNIKCLGVQSR
FT                   TKTTYITTPSMQVVREKLSKL"
XX
SQ   Sequence 2637 BP; 707 A; 580 C; 594 G; 756 T; 0 other;
     accggatggc cgcccgtttt tggtgtcctc tactttagcc cacggggcag gcccaggccc        60
     aaatcaacca caaccttttt tattttatgg gaccacatta attattgcaa ccaaccacgt       120
     tgcgcctgac gagtctacat aataatgact tggtgactaa atgtggtccc tataaataaa       180
     gctgacatat cccatacctc tttaattcaa aatggtaaag agagatgccc catggtgttt       240
     aatggcgggg acctcaaagg tctcacgctc tgctaacttt tcgcctcgtg gaggtatggg       300
     cccaagattc aacaaggccg ctgcatgggt taacaggccc atgtacagga agcccaggat       360
     ctatcgcaca atgagaggcc cagacatccc caagggatgt gaagggccat gcaaggttca       420
     gtcttacgag cagcggcatg atatctccca tcttggcaag gtaatgtgta tttcggacgt       480
     gacgcgtggt aatggcatta ctcaccgcgt cggcaagcgc ttttgtgtta agtctgtata       540
     tattttaggc aagatatgga tggacgaaaa tatcaagttg aagaatcaca caaacagtgt       600
     gattttttgg ttagttcgag atcgtagacc atatggcact ccgatggatt tcggccaggt       660
     gttcaacatg tttgacaacg agcccagcac ggcaactatc aagaacgatc tacgtgatcg       720
     ttatcaagtc atgcacaggt tctacgcgaa ggtcactggt ggtcagtatg ctagcaacga       780
     acaagccttg gttaggcgtt tctggaaggt caacaactat gttgtgtata atcaccagga       840
     agccgcgaaa tacgagaatc atacggagaa cgctttgtta ttgtatatgg catgtactca       900
     tgcctctaac cctgtatatg cgacattgaa aattcggatc tatttttatg attcgataac       960
     aaattaataa attttgaatt ttatttcatg attctcgagt acataattta catatgaacg      1020
     gtctgttgac caagatacag ctcgtataac gttattgaga ccaataactc ctaacctatc      1080
     taagtacaac ataactaagt gcctaaatct attcaaatat gtcgtcccag aagctcgaat      1140
     cgattccgtc cagacttgga agttcaggaa cgctttgtga agatttagtg ctctcctcag      1200
     gttgtggttg aaccggattt gaatgtggta tatccttgtg tgcgtgtaga gtggatcctc      1260
     cacgttgtac atcttgaaat agaggggatt tggaacctcc caaataaaaa cggaattctc      1320
     tgcctgatgc acagtgatgt cgtcccatgt gcgtaaatcc attaccatct ttggcgcagt      1380
     ttatatgtat gtatatggaa cagccacagt ctaagtcgat tcttcgacga cgaacagctc      1440
     tttttttagc aatcctgtgc tgagctttga tagaggggac cttcgaggaa gatgaatttg      1500
     gcattttttt cagtccactc tcgtagtgcc gagttctcgg ctttgtcgag gaaatcttta      1560
     taactggacc cctctccagg attgcacagc acgattgatg ggattccacc tttaatttga      1620
     accggctttc catatttaca gttggactgc cagtcccttt gggccccaat caattccttc      1680
     cagtgcttta gctttaggta atgcggagcg acgtcatcaa tgacgttata cttgacgtca      1740
     tttgagaaaa ccctagaatt gaaatcaaga tggccgctca agtaattatg tgggcctaat      1800
     gacctagccc acattgtctt gcccgttctt gaaccacctt ctatgattat actagttggc      1860
     cttggccgcg cagcggaaca ctcattaaaa taatcatcag cccaatcttg taactcttct      1920
     ggaactgacg tgaacgaaga gatctcaaac ggaggaaccc atggttccgg aggtttctga      1980
     aataatctct cgacgttagc taataaatta tgataattaa cgataaacgt ctttggatca      2040
     ccagctttta taatttcgag agcttctccc gcactacctg cattgacggc gttgtgatat      2100
     acgtcgtctt tgttcgactt tgaaccccca gacactttat attgcccgga ttcacaataa      2160
     tcaccttctt tggtgatgta gttcttgacg gcgttggtgt ctttggcagc ctgaatgttc      2220
     gggtgaaatc gggcagaccg tctggggtga gtgaggtcga aaaatccagc atccttgatg      2280
     ttggattttc cagataattg aatgaggcag tgtaagtgcg gagacccgtc ggaatgttcc      2340
     tctctggcga ctctaatgta attcggtttg acgactgacc acgagagatg cagaagcatc      2400
     tcaagaactt cttctttggg aacatcgcac cttggataag ttaagaatat atttctggca      2460
     gttaaacgaa aggaattagg gtttcgtggc atatttcgta aatatgcgtc gggacaccag      2520
     gaggtgtcct ctcaactttc tcatattgct ggtgtcctgg tgtcctatat atacctcaag      2580
     acacataaag cctctaggga acaccaaggg gcaaaatcgg ccatccgcaa taatatt         2637
//