ID JX444575; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC JX444575; XX DT 03-OCT-2012 (Rel. 114, Created) DT 28-MAR-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato yellow leaf curl virus isolate Homra, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Haj Ahmad F., Odeh W., Anfoka G.; RT "First Report on the Association of Squash leaf curl virus and Watermelon RT chlorotic stunt virus with Tomato Yellow Leaf Curl Disease"; RL Plant Dis. 97(3):428-428(2013). XX RN [2] RP 1-2781 RA Anfoka G.H., Haj Ahmad F.W.; RT ; RL Submitted (30-JUL-2012) to the INSDC. RL Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa' RL Applied University, Al-Salt 19117, Jordan XX DR MD5; d7ec2a01473092d00e587cd879d9e170. XX CC ##Assembly-Data-START## CC Assembly Method :: CLC Main Workbench v. 6.6.2 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="tomato" FT /isolate="Homra" FT /mol_type="genomic DNA" FT /country="Jordan" FT /collection_date="2011" FT /db_xref="taxon:10832" FT CDS 314..664 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:A6H4Y2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A6H4Y2" FT /protein_id="AFT90666.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT CDS 474..1250 FT /codon_start=1 FT /product="V1" FT /db_xref="GOA:Q6PMS6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6PMS6" FT /protein_id="AFT90667.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1247..1651) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:K0E2F0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K0E2F0" FT /protein_id="AFT90668.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1392..1799) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:K0E4A8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K0E4A8" FT /protein_id="AFT90669.1" FT /translation="MQASSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHPDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1708..2781) FT /codon_start=1 FT /product="C1" FT /db_xref="GOA:K0E0C6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K0E0C6" FT /protein_id="AFT90670.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLENPTNKKYIKIC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEVWVSENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHLKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNASFVTLYEPLFT FT SINQGPTQDSQEETNKA" FT CDS complement(2337..2630) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5A3G7" FT /protein_id="AFT90671.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 753 A; 531 C; 612 G; 885 T; 0 other; gttgaaatga atcggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg tgtcttactt 60 atacctggac acctaatggc tatttggtaa ttttgtaaaa gtacattgga attcaaaatt 120 caaaattcaa aaatgaaatc attaaagcgg ccatccgtat aatattaccg gatggccgcg 180 ccttttcttt ttatgtggtc cccccgaggg ttccacagac gtcactgtca accaatcaaa 240 ttgcatcctc aaacgttaga taagtgttta tttgtcttta tatacttggt ccccaagtag 300 tttgtcttgc actatgtggg atccacttct aaatgaattt cctgaatccg ttcacggatt 360 tcgttgtatg ttagctatta aatatttgca ggccgttgag gaaacttacg agcccaatac 420 attgggccac gatttaatta gggatcttat atctgttgta agggcccgtg actatgtcga 480 agcgaccagg cgatataatc atttccacgc ccgtctcgaa ggttcgccga aggctgaact 540 tcgacagccc atacagcagc cgtgctgctg tccccattgt ccaaggcaca aacaagcgac 600 gatcatggac gtacaggccc atgtaccgga agcccagaat atacagaatg tatcgaagcc 660 ctgatgttcc tcgtggatgt gaaggcccgt gtaaagtaca gtcttatgag caacgggatg 720 atattaagca cactggtatt gttcgttgtg ttagtgatgt tactcgtgga tctggaatta 780 ctcacagagt tggtaagagg ttctgtgtta agtcgatata ttttttaggt aaagtctgga 840 tggatgaaaa tatcaagaag cagaatcaca ctaatcaggt catgttcttc ttggtccgtg 900 atagaaggcc ctatggaagc agcccaatgg attttggaca ggtttttaat atgtttgata 960 atgagcccag taccgcaacc gtgaagaatg atttgcgtga taggtttcaa gtgatgagga 1020 aatttcatgc tacagttatt ggtgggccct ctggaatgaa ggaacaggca ttagttaaga 1080 gattttttaa aattaacagt catgtaactt ataatcatca ggaggcagcc aagtatgaga 1140 accatactga aaacgccttg ttattgtata tggcatgtac gcatgcctct aatccagtgt 1200 atgcaactat gaaaatacgc atctatttct acgattcaat atcaaattaa taaaatttat 1260 attttatatc atgagtttct gttacattta ttgtgttttc aagtacatca tacaatacat 1320 gatcaactgc tctgattaca ttgttaattg aaattacacc aagattatct aaatacttaa 1380 gaacttgata tctaaatact cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa 1440 ttcggaagtt gagaaaacat ttgtgaatcc ccaatacctt cctgatgttg tggttgaatc 1500 ttatctggat ggaaatgatg tcgtggttca ttagaaatgg cctctggctg tgttctgtta 1560 tcttgaaata gaggggattg tttatctccc agataaaaac gccattctct gcttgaggag 1620 cagtgatgag ttcccctgtg cgtgaatcca tgattgttgc agttgatgtg gaggtagtat 1680 gagcatccac agtctaggtc tacacgctta cgccttattg gtttcttctt ggctatcttg 1740 tgttggacct tgattgatac ttgtgaacag tggctcgtag agggtgacga agcttgcatt 1800 cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatatt ccctatatga 1860 ggaggtaggt cctggattgc agaggaagat agtgggaatt ccccctttaa tttgaatggg 1920 cttcccgtac tttgtgttgc tttgccagtc cctctgggcc cccatgaatt ccttgaggtg 1980 ctttaaataa tgcgggtcta cgtcatcaat gacgttgtac cacgcatcat tactgtacac 2040 ctttgggctt aggtctagat gtccacataa ataattatgt gggcctagag acctggccca 2100 cattgttttg cctgttctgc tatcaccctc aatgacaata cttatgggtc tccatggccg 2160 cgcagcggaa gacacgacgt tctcggacac ccatacttca agttcatctg gaacttgatt 2220 aaaagaagaa gaaagaaatg gagaaacata aacttctaaa ggaggactaa aaatcctatc 2280 taaatttgaa cttaaattat gaaattgtaa aatatagtcc tttggggcct tctcttttaa 2340 tatattgagg gcctcggatt tactgcctga attgagtgcc tcggcatatg cgtcgttggc 2400 agattgctga cctcctctag ctgatctgcc atcgatttgg aaaactccaa aatcaatgaa 2460 gtctccgtct ttctccacgt aggtcttgac atctgttgag ctcttagctg cctgaatgtt 2520 cggatggaaa tgtgctgacc tgtttgggga taccaggtcg aagaaccgtt ggttcttaca 2580 ttggtatttg ccttcgaatt ggataagcac atggagatgt ggttccccat tctcgtggag 2640 ttctctgcaa attttgatgt attttttatt tgttgggttt tctaggtttt ttaattggga 2700 aagtgcttcc tctttagaga gagaacaatt gggatatgtt aggaaataat ttttggcata 2760 tattttaaat aaacgaggca t 2781 //