Dbfetch
ID JX429887; SV 1; linear; genomic RNA; STD; VRL; 2290 BP. XX AC JX429887; XX DT 03-OCT-2012 (Rel. 114, Created) DT 17-MAR-2013 (Rel. 116, Last updated, Version 3) XX DE Blackberry chlorotic ringspot virus isolate Arkansas Rose 11 movement DE protein and coat protein genes, complete cds. XX KW . XX OS Blackberry chlorotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2290 RX DOI; 10.1007/s00705-012-1523-4. RX PUBMED; 23108578. RA Poudel B., Tzanetakis I.E.; RT "Population structure of blackberry chlorotic ringspot virus in the United RT States"; RL Arch. Virol. 158(3):667-672(2013). XX RN [2] RP 1-2290 RA Poudel B., Tzanetakis I.E.; RT ; RL Submitted (26-JUL-2012) to the INSDC. RL Plant Pathology, University of Arkansas, 495 N Campus Drive, Fayetteville, RL AR 72701, USA XX DR MD5; c057a261bf9bdd56ec46fdf562fc5013. XX FH Key Location/Qualifiers FH FT source 1..2290 FT /organism="Blackberry chlorotic ringspot virus" FT /segment="RNA3" FT /host="Rosa multiflora" FT /isolate="Arkansas Rose 11" FT /mol_type="genomic RNA" FT /country="USA:AR" FT /isolation_source="leaf" FT /collection_date="2010" FT /db_xref="taxon:339420" FT CDS 217..1116 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:K0DYS3" FT /db_xref="InterPro:IPR002538" FT /db_xref="UniProtKB/TrEMBL:K0DYS3" FT /protein_id="AFT91211.1" FT /translation="MALTPKMTALTFSADDEASLEKAVTEALAGSMELNMGIRRCAAFP FT ATNTEAFLCELTTKETKTFIGKFTDKVRGRVFVDHAVIHLMYIPVILNTTDAIAELKLK FT NLATGDELYGGTKVNLNEAFILTMTWPRSLFADEVNKHKGLYLGGVVSCAPHVPKSAKI FT GMWYPMWTEKVSAKQLYQDTAKITNTRALETYTRTMISSDKEMRSLLRSRASIDIAAKS FT KENPVLCSQYVNLLDQRVEGVDFTVKQIKPADVEFLQLDEGPSSETVVLKPQLVSTDTT FT TVDVDKPAIPASRNLLTA" FT CDS 1294..1989 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:K0E3E1" FT /db_xref="InterPro:IPR002681" FT /db_xref="InterPro:IPR016405" FT /db_xref="UniProtKB/TrEMBL:K0E3E1" FT /protein_id="AFT91212.1" FT /translation="MSVNRGRNGNSNGNRGCPNCFDGLDAAASNCTRCNSPVSNRQRRN FT ARRAANFRNQRNVGATGALRAPIPLPVVPVPQALNQRTLRLPNGQVWVTRKPTDWAAKT FT NDANDAMLLKTIFDGIPEIKPDTKVFRVLIGFVAESDGTFGIVDGVTGDTVPDLPIVGR FT LGFQKNVYRSRDIVLEGKPADQLSEKAIVWCLNTSKRVEKRVRLADFWVAISKPKPLMP FT PPDFLVEDN" XX SQ Sequence 2290 BP; 612 A; 483 C; 549 G; 646 T; 0 other; gtattctctg agcataatac cacttactta aacaactccg aatcggacga tttccaactt 60 tgaattccta caagttgagg tctttgggcc ggttgtttaa atttgtcaat cagataccac 120 tatccgatcg gaggatctac cgatttaaac gttttcccaa acgtcggttg ctgttgggat 180 cgattggtta ggaccgtcat tttagaaaag gttgaaatgg ctttgacccc aaagatgact 240 gcgcttacat tctcagctga tgatgaagca tcattagaga aggctgtcac tgaagctctc 300 gctggttcga tggagctgaa tatgggtata aggcgatgtg ctgcttttcc tgccaccaac 360 actgaagcgt ttctttgtga gttaactacc aaagaaacga aaacctttat cggtaaattt 420 accgataagg tccgtggtcg agtttttgtc gaccacgctg ttatacattt gatgtatata 480 ccagtgattt tgaataccac cgatgctatt gctgaattaa agcttaagaa tttagctacc 540 ggtgatgaat tgtatggtgg tacgaaggtc aatttaaacg aggcattcat tttaacaatg 600 acatggcctc gatctttgtt cgctgatgag gttaataagc acaaagggct ctacctcggt 660 ggagtggttt cctgtgctcc tcatgttcct aagtccgcaa aaattgggat gtggtacccc 720 atgtggactg agaaggtctc tgccaaacag ctgtatcaag atactgctaa aatcacaaat 780 acaagggcat tagagacgta tactcgaaca atgataagca gcgataaaga aatgcgtagc 840 ctattgagaa gtcgtgcctc aatagatatt gccgccaagt caaaagagaa tcccgtactg 900 tgctctcagt acgtaaattt gcttgatcaa agagttgaag gtgttgattt taccgtcaag 960 caaattaaac cagcagatgt tgagttcctt cagcttgatg aaggacccag tagtgagacc 1020 gttgttttga aacctcaatt ggtttccact gataccacta ctgtcgatgt tgacaagcct 1080 gctataccag caagtaggaa cttgctgact gcctgatcac cgttttgatg ttaccatttc 1140 cagacgtggg gagttcttag aatagggggg agtacctcgg tgtgactcga gtattaagtt 1200 agtgaattct ttaatgaaag ataagctgct tcttgagctt acctgagatg tacaagtact 1260 ttgactaaga atccagacca accatccaac gccatgtctg tcaacagggg aagaaatggt 1320 aactccaacg gtaacagagg ttgcccaaac tgttttgacg gtttggatgc cgctgcttct 1380 aactgcacgc gatgtaattc tccagtgtct aaccgccagc gtcgtaatgc gcggcgggct 1440 gcgaatttcc gcaaccaacg taatgttggt gcgacgggag ctttaagggc tcctattcca 1500 ttacctgtgg ttcctgtacc acaagccctc aatcagcgaa ccctgcgcct acctaatggt 1560 caagtctggg taaccagaaa accaaccgat tgggcggcta agactaatga tgccaacgac 1620 gctatgttgt tgaagaccat ttttgatggt atacccgaaa tcaaaccgga caccaaggtg 1680 ttccgtgttt tgattggttt cgtcgccgag tctgatggga cttttgggat agtggatggt 1740 gttaccggtg acactgtgcc cgatctaccc attgttggta gattgggttt tcagaaaaat 1800 gtgtaccgaa gccgagacat tgttctcgag ggaaaacctg ctgatcagct ttcagagaaa 1860 gctatagtat ggtgcctcaa cactagtaag cgtgttgaga agcgggtgag attggctgac 1920 ttttgggtcg ccatttcgaa accgaagccg ttgatgcctc ctccagattt tctggtcgag 1980 gataattgac tggtgaatca cctcgaaggt aacttcgaga tgcctcacga cttaccagaa 2040 gtagctggtt cgtgcgtgag atgcggattt cgcccacgga gagtgccaga tgcactctac 2100 tggtggtgtg acatgtgcaa ttatttgcac tatgcatagt tacctcgcat ccgggtataa 2160 atctatgaat ttcgctagaa cattccgaat cggacgattt ccacctgaaa aggtgagacc 2220 tttgggtcga tgttctattg gttccgttaa taatattaat tattaacgat gcctccaatt 2280 aaagagatgc 2290 //