ID   JX427542; SV 1; linear; genomic RNA; STD; VRL; 1382 BP.
XX
AC   JX427542;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pTW1 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1382
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1382
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 61a47f6f893feb84a422d0c08709494a.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1382
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum sp. (chilli)"
FT                   /isolate="pTW1"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Tainan"
FT                   /collection_date="17-Jul-2009"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MDC4"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDC4"
FT                   /protein_id="AFU85604.1"
FT                   /translation="SVAEWMLHDDMVVRNKLTLDLNSTTEKLRSAWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHVFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHQWLVSPVLPQNN"
FT   gene            776..>1382
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776..>1382
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MDX2"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDX2"
FT                   /protein_id="AFU85605.1"
FT                   /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT                   RRRNGGRNRRSRDRVGGRSSNSETFIFNKDSIKDSSSGSVTFGPSLSESVALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            807..1277
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             807..1277
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MC72"
FT                   /protein_id="AFU85606.1"
FT                   /translation="MEMVDHVTPAVVDAHDRFALSLWSHPLGAHGEEIEDDEMEAGTEE
FT                   AEIELEEGRATAKLSSSTRTQSRIVPQDLSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCVSSPSPKAGKRLFGLRRLTG"
XX
SQ   Sequence 1382 BP; 369 A; 345 C; 343 G; 325 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaataaact cacactggac        60
     ttgaattcta caacagagaa gctacgatct gcgtggctga aatgcatttg caacagtgtc       120
     ctgtgtttga gtgatggcac tctcctcgcc caaagggtcc ccggcgttca aaagtccggc       180
     agctacaata caagtagctc aaattcaagg atccgggtta tggccgctta ccactgtggg       240
     gctgactggg ccatggcgat gggagatgat gccctcgaat cagtcaacac caacctagag       300
     gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt ctgctctcat       360
     gtctttagag cgcctgacct cgcccttccc gtgaatgagc gcaaaatgct gtacaagctc       420
     atcttcggat ataatccggg aagtgggaat ctggaggtca tctccaacta tattgccgct       480
     tgtgtgtcag ttctaaacga gctgcggcat gacccagatt ctgttgctct ccttcaccag       540
     tggctagtgt ctccagtgct gccacaaaat aattgaagag agagcatata actagccaag       600
     caaacatcag ttgcaagcgt tggaaagttc tagtctgatt accaacagcc tgacataata       660
     gattataaat ttttagcagg atttgcgttt ggatttttat ccgcaatccc aatttctgta       720
     gcaggcatat acctagtcta ccttaaaatc tcagcccacg tacgtgcaat cgttaatgaa       780
     tacgggaggg gttaggagaa acaataatgg aaatggtgga tcacgtaaca cccgccgtcg       840
     tagacgccca cgacaggttc gccctgtcgt tgtggtcgca ccccctgggc gcacacggcg       900
     aggaaatcga agacgacgaa atggaggcag gaaccgaaga agccgagata gagttggagg       960
     aaggtcgagc aacagcgaaa ctttcatctt caacaaggac tcaatcaagg atagttcctc      1020
     aggatctgtc accttcgggc cgtctctatc agagagcgtc gcgctttcag gtggagttct      1080
     caaagcctac catgaatata agatcacaat ggtcaacata cgcttcgtca gtgaatcctc      1140
     ttccacagcg gagggctcca tcgcttacga gctggacccc cactgcaagc ttactagtct      1200
     ccaatccacc ctgcgtaagt tccccgtcac caaaggcggg caagcgactt ttcgggcttc      1260
     gcagattaac ggggtagagt ggcatgatac atccgaagat caatttaggc tgctctacaa      1320
     aggcaacggg acaaagaacg ttgccgccgg tttcttccag atccggttca ctgtgcaatt      1380
     gc                                                                     1382
//