ID   JX427541; SV 1; linear; genomic RNA; STD; VRL; 1381 BP.
XX
AC   JX427541;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pTH4 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1381
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1381
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; abd7cba382e71f02cc8bd880b183e8ad.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1381
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum sp. (chilli)"
FT                   /isolate="pTH4"
FT                   /mol_type="genomic RNA"
FT                   /country="Thailand:Nakhon Pathom"
FT                   /collection_date="15-May-2009"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MC71"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MC71"
FT                   /protein_id="AFU85601.1"
FT                   /translation="SVAEWMLHDDMVVRNKLTLDLNPTTEKLRSTWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHQWLVSPVLPQNN"
FT   gene            775..>1381
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             775..>1381
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MCH6"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MCH6"
FT                   /protein_id="AFU85602.1"
FT                   /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT                   RRRNGGRNRRSRNGVGGRSSNSETFVFNKDSIKDSSSGAVTFGPSLSESIALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            806..1276
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             806..1276
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDV8"
FT                   /protein_id="AFU85603.1"
FT                   /translation="MEMVDHVTPAVVDAHDRFALSLWSHPLGAHGAEIEDDEMEAGTEE
FT                   AEMELEEGRATAKLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCASSPSPKAGKRLFGLRRLTG"
XX
SQ   Sequence 1381 BP; 369 A; 354 C; 342 G; 316 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaataaact cacactggac        60
     ttgaatccta caacggagaa gctgcgatca acgtggctaa aatgcatttg caacagcgtc       120
     ctgtgtttga gcgatggcac actcctcgcc caaagggtcc ccggcgttca aaagtccggc       180
     agttacaaca ctagtagctc aaattcaagg atccgagtta tggccgccta ccactgtggg       240
     gccgactggg ccatggcgat gggagatgat gccctcgagt cagtcaacac caacctagag       300
     gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt ctgctctcat       360
     atctttagag cgcctgacct cgcccttccc gtgaatgagc gtaaaatgct gtacaagctc       420
     atcttcggat acaatccggg aagtgggaat ctggaggtta tctccaatta tattgccgcc       480
     tgtgtatcag ttctaaatga gttgcggcat gacccagatt ccgttgctct ccttcaccag       540
     tggctagtct ctccagtgct gccacaaaat aattgaagag agagcacata actagccaag       600
     catacatcag ttgcaagcgt tggaagttca agtctgatta ccaacagcct gacacaatag       660
     attataaatt tttagcagga tttgcgtttg gattcttatc cgcaatccca atttctgtag       720
     caggcatata cctagtctac cttaaaatct cagcccacgt acgcgcgatc gttaatgaat       780
     acgggaggag ttaggagaaa caataatgga aatggtggat cacgtaacac ccgccgtcgt       840
     agacgcccac gacaggttcg ccctgtcgtt gtggtcgcac cccctgggcg cacacggcgc       900
     ggaaatcgaa gacgacgaaa tggaggcagg aaccgaagaa gccgaaatgg agttggagga       960
     aggtcgagca acagcgaaac tttcgtcttc aacaaggact caatcaagga tagttcctca      1020
     ggagctgtca ccttcgggcc gtctctatca gagagcatcg cgctttcagg tggagttctc      1080
     aaagcctacc atgaatataa gatcacaatg gtcaacatac gcttcgtcag tgaatcctct      1140
     tccacagcgg agggctccat cgcttacgag ctggaccccc actgcaagct tactagtctc      1200
     caatccaccc tgcgcaagtt ccccgtcacc aaaggcgggc aagcgacttt tcgggcttcg      1260
     cagattaacg gggtagagtg gcatgataca tccgaagatc aatttaggct gctctacaaa      1320
     ggcaacggga cgaagaacgt cgccgccggt ttctttcaga tccggtttac tgtgcaattg      1380
     c                                                                      1381
//