ID   JX427538; SV 1; linear; genomic RNA; STD; VRL; 1381 BP.
XX
AC   JX427538;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pPH3 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1381
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1381
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 46c68238169b9f92d1e908358bcd8cf9.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1381
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum sp. (chilli)"
FT                   /isolate="pPH3"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Laguna"
FT                   /collection_date="22-Nov-2010"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MCG9"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MCG9"
FT                   /protein_id="AFU85592.1"
FT                   /translation="SVAEWMLHDDMVVRNRLTLDLNPTTEKLRSAWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHTWLVSPVLPQNN"
FT   gene            775..>1381
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             775..>1381
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MDV4"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDV4"
FT                   /protein_id="AFU85593.1"
FT                   /translation="MNTGGVRSNNNGNGGSRSTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT                   RRRNGGRNRRSRNRVGGRSSNSETFIFNKDSIKDSSSGAVTFGPSLSESIALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGIEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            806..1276
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             806..1276
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDC2"
FT                   /protein_id="AFU85594.1"
FT                   /translation="MEMVDHVAPAVADAHDRFALSLWSHPLGAHGGEIEDDEMEAGTEE
FT                   AEIELEDGRATARLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCVSSPSPKAGKQRSGLRRLMG"
XX
SQ   Sequence 1381 BP; 367 A; 353 C; 343 G; 318 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaatagact cacactggac        60
     ttaaatccta caacggagaa gctacgatct gcgtggctaa agtgcatttg taatagtgtc       120
     ctgtgtttga gcgatggcac actcctcgcc caaagggtcc ccggcgttca gaagtccggc       180
     agctacaaca caagtagctc aaattcaagg atccgagtta tggccgccta ccactgtggg       240
     gctgactggg ccatggcgat gggagatgat gccctcgaat cagtcaacac caacctggag       300
     gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt ctgctctcat       360
     atctttagag cgcctgacct cgcccttccc gtgaatgagc gcaaaatgct gtacaagctc       420
     atcttcggat acaatccggg aagtgggaat ctggaggtta tctccaacta tattgccgcc       480
     tgtgtatcag ttctaaacga gttgcggcac gacccagatt ctgttgctct ccttcacacg       540
     tggctagtct ctccagtgct gccacaaaat aattgaagag agagcatata actagccaag       600
     catacatcag ttgcaagcgt tggaagttca agtctgatta ccaacagcct gacataatag       660
     attataaatt tttagcagga ttcgcgttcg gatttttatc cgcaatccca atttctgtag       720
     caggcatata cctagtctac cttaagatct cagcccacgt tcgcgcgatc gttaatgaat       780
     acgggaggag ttaggagcaa taataatgga aatggtggat cacgtagcac ccgccgtcgc       840
     agacgcccac gacaggttcg ccctgtcgtt gtggtcgcac cccctgggcg cacacggcgg       900
     ggaaatcgaa gacgacgaaa tggaggcagg aaccgaagaa gccgaaatag agttggagga       960
     cggtcgagca acagcgagac tttcatcttc aacaaggact caatcaagga tagttcctca      1020
     ggagctgtca ccttcgggcc gtctctatca gagagcatcg cgctttcagg tggagttctc      1080
     aaagcctacc atgaatataa gatcacaatg gtcaacatac gcttcgtcag tgaatcctct      1140
     tccacagcgg agggctccat cgcttacgag ctggaccccc actgcaagct tactagtctc      1200
     caatccaccc tgcgtaagtt ccccgtcacc aaaggcgggc aagcaacgtt ccgggcttcg      1260
     cagattaatg ggatagagtg gcatgataca tccgaagatc aatttaggct gctctataaa      1320
     ggcaacggaa caaagaacgt tgccgccggt ttcttccaga tccggttcac tgtgcaattg      1380
     c                                                                      1381
//