ID   JX427537; SV 1; linear; genomic RNA; STD; VRL; 1382 BP.
XX
AC   JX427537;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pPH2 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1382
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1382
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 724ff66f8879ce6c427af85e5cdc2e9d.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 4
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1382
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum sp. (chilli)"
FT                   /isolate="pPH2"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Pangasinan"
FT                   /collection_date="29-Jun-2010"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MDC1"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDC1"
FT                   /protein_id="AFU85589.1"
FT                   /translation="SVAEWMLHDDMVVRNKLTLDLNPTTEKLRSAWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHAWLVSPVLPQNN"
FT   gene            776..>1382
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776..>1382
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MDW5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDW5"
FT                   /protein_id="AFU85590.1"
FT                   /translation="MNTGGVKRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT                   RRRNGGRNRRSRDRVGGRSSNSETFIFNKDSIKDSSSGAVTFGPSLSESIALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            807..1277
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             807..1277
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MC67"
FT                   /protein_id="AFU85591.1"
FT                   /translation="MEMVDHVTPAVVDAHDRFALSLWSHPLGAHGEEIEDDEMEAGTEE
FT                   AEIELEEGRATAKLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCVSSPSPKAGKRLFGLRRLTG"
XX
SQ   Sequence 1382 BP; 374 A; 350 C; 338 G; 320 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaataaact cacactggac        60
     ttaaatccca caacggagaa gctacgatct gcgtggctaa aatgcatttg caatagtgtc       120
     ctgtgtttga gtgatggcac tctcctcgcc caaagggtcc ccggcgttca aaagtccggc       180
     agctacaata caagtagctc aaattcaagg atccgagtta tggccgccta ccactgtggg       240
     gctgactggg ccatggcgat gggagatgat gccctcgaat cagtcaacac caacctagag       300
     gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt ctgctctcac       360
     atttttaggg cgcctgacct cgcccttccc gtgaatgagc gcaaaatgct gtacaagctc       420
     atcttcggat ataatccggg aagtgggaat ctggaggtta tctccaatta tattgccgcc       480
     tgcgtatcag ttctaaacga gttgcggcac gacccagatt ccgttgctct ccttcacgcg       540
     tggctagtct ctccagtgct gccacaaaat aattgaagag agagcatata actagccaag       600
     caaacatcag ttgcaagcgt tggaaagttc aagtctgatt accaacagcc tgacacaata       660
     gattttaaat ttttagcagg atttgcgttt ggattcttat ccgcaatccc aatttctgta       720
     gcaggcatat acctagtcta ccttaaaatc tcagcccacg tacgcgcaat cgttaatgaa       780
     tacgggagga gttaagagaa acaataatgg aaatggtgga tcacgtaaca cccgccgtcg       840
     tagacgccca cgacaggttc gccctgtcgt tgtggtcgca ccccctgggc gcacacggcg       900
     aggaaatcga agacgacgaa atggaggcag gaaccgaaga agccgagata gagttggagg       960
     aaggtcgagc aacagcgaaa ctttcatctt caacaaggac tcaatcaagg atagttcctc      1020
     aggagctgtc accttcgggc cgtctttatc agagagcatc gcgctttcag gtggagttct      1080
     caaagcctac catgaatata agatcacaat ggtcaacata cgcttcgtca gtgaatcctc      1140
     ttccacagcg gagggctcca tcgcttacga gctggacccc cactgcaagc ttactagtct      1200
     ccaatccacc ctgcgtaagt tccccgtcac caaaggcggg caagcgactt ttcgggcttc      1260
     gcagattaac ggggtagagt ggcatgatac atccgaagat caatttaggc tgctctacaa      1320
     aggcaatgga acgaagaacg ttgccgccgg tttcttccag atccggttca ctgtgcaatt      1380
     gc                                                                     1382
//