ID   JX427536; SV 1; linear; genomic RNA; STD; VRL; 1382 BP.
XX
AC   JX427536;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pMA3 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1382
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1382
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; a4c4d7efae8b2c33efd5d31333ffd6d0.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1382
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum annuum (bell pepper)"
FT                   /isolate="pMA3"
FT                   /mol_type="genomic RNA"
FT                   /country="Mali:Bamako"
FT                   /collection_date="14-Apr-2009"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MC66"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MC66"
FT                   /protein_id="AFU85586.1"
FT                   /translation="SVAEWMLHDDMVVRNKLTLDLNSTTEKLRSAWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHKWLVSPVLPQNN"
FT   gene            776..>1382
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776..>1382
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MCG7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MCG7"
FT                   /protein_id="AFU85587.1"
FT                   /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRARRGNR
FT                   RRRNGGRNRRSRNGVGGRSSNSETFIFNKDSIKDSSSGAVTFGPSLSESVALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            807..1277
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             807..1277
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDW3"
FT                   /protein_id="AFU85588.1"
FT                   /translation="MEMVDHVTPAVADAHDRFALSLWSHPLGAHGAEIEDDEMEAGTEE
FT                   AEMELEEGRAIAKLSSSTRTQSRIVPQELSPSGRLYQRALRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCASSPSPKAGKRLFGLRRLTG"
XX
SQ   Sequence 1382 BP; 368 A; 347 C; 343 G; 324 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaacaaact cacactggac        60
     ttaaactcta caacggagaa gctacgatct gcgtggctaa aatgcatctg caacagtgtc       120
     ctgtgtttga gcgatggtac tctcctcgcc caaagggtcc ccggcgttca aaagtccggt       180
     agctacaata caagtagctc aaattcaagg atccgagtta tggccgccta ccactgtgga       240
     gctgattggg ctatggcgat gggagatgat gccctcgagt cagtcaacac caacctagag       300
     gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt ctgctctcac       360
     atctttagag cgcctgacct cgcccttccc gtgaatgagc gcaaaatgct gtacaagctc       420
     atcttcggat ataatccggg aagtgggaat ctggaggtta tctccaacta tattgccgcc       480
     tgtgtatcag ttctaaacga attgcggcac gacccagatt ccgtagctct ccttcacaag       540
     tggctagtct ctccagtgct gccacaaaat aattgaagag agagcatata actagccaag       600
     catacatcag ttgcaagcgt tggaaagttt tagtctgatt accagcagcc tgacacaata       660
     gattataagt ttttagcagg atttgcgttt ggatttttat ccgcaatccc aatttctgta       720
     gcaggcatat acctagtcta ccttaagatc tcagcccacg tccgtgcgat cgttaatgaa       780
     tacgggagga gttaggagaa acaataatgg aaatggtgga tcacgtaaca cccgccgtcg       840
     cagacgccca cgacaggttc gccctgtcgt tgtggtcgca ccccctgggc gcgcacggcg       900
     cggaaatcga agacgacgaa atggaggcag gaaccgaaga agccgaaatg gagttggagg       960
     aaggtcgagc aatagcgaaa ctttcatctt caacaaggac tcaatcaagg atagttcctc      1020
     aggagctgtc accttcgggc cgtctctatc agagagcgtt gcgctttcag gtggagttct      1080
     caaagcctac catgaatata agatcacaat ggtcaacata cgcttcgtca gtgaatcctc      1140
     ttccacagcg gagggctcca tcgcttacga gctggacccc cactgcaagc ttactagtct      1200
     ccaatccacc ctgcgcaagt tccccgtcac caaaggcggg caagcgactt ttcgggcttc      1260
     gcagattaac ggggtagagt ggcatgatac atccgaagat caatttaggc tgctctacaa      1320
     aggcaacggg acgaagaacg ttgccgctgg tttctttcag atccggttta ctgtgcaatt      1380
     gc                                                                     1382
//