ID   JX427533; SV 1; linear; genomic RNA; STD; VRL; 1381 BP.
XX
AC   JX427533;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pID12 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1381
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1381
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 2b0ee027c0fdf9df93b3e1d912fcb463.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 2
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1381
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum sp. (chilli)"
FT                   /isolate="pID12"
FT                   /mol_type="genomic RNA"
FT                   /country="Indonesia:Central Java, Pati"
FT                   /collection_date="21-Sep-2009"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MCG3"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MCG3"
FT                   /protein_id="AFU85577.1"
FT                   /translation="SVAEWMLHDDMVVRNKLTLDLNPTTEKLRSAWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHQWLVSPVLPQNN"
FT   gene            775..>1381
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             775..>1381
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MDU8"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDU8"
FT                   /protein_id="AFU85578.1"
FT                   /translation="MNTGGVRSNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT                   RRRNGGRNRRSRNRVGGRSSNSETFVFNKDSIKDSSSGAVTFGPSLSESIALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            806..1276
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             806..1276
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDB9"
FT                   /protein_id="AFU85579.1"
FT                   /translation="MEMVDHVTPAVADAHDRFALSLWSHPLGAHGEEIEDDEMEAGTEE
FT                   AEIELEDGRATARLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRALSLTSWTPTASLLVSNPPCVSSPSPKAGKRLFGLRRLTG"
XX
SQ   Sequence 1381 BP; 370 A; 352 C; 342 G; 317 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaacaaact cacactggac        60
     ctaaatccta caacggaaaa gctacgatct gcgtggctaa aatgtatatg caacagtgtc       120
     ctgtgtttga gtgatggtac actcctcgcc caaagggtcc ccggcgttca aaagtccggc       180
     agctacaaca caagtagctc aaattcaagg atccgagtga tggccgccta ccactgtggg       240
     gctgactggg ccatggcgat gggagacgat gccctcgaat cagtcaacac caacctggag       300
     gtgtataaaa gtctaggttt taaagtcgag gtttcaggac aactggaatt ctgctctcac       360
     atctttagag cgcctgacct tgcccttccc gtgaatgagc gcaaaatgct gtacaagctc       420
     atcttcggat ataatccggg aagtgggaat ctggaggtta tctccaacta tattgccgcc       480
     tgtgtatcag ttctgaatga gttgcggcat gacccagatt ccgttgctct ccttcaccag       540
     tggctagtct ctccagtgct gccacaaaat aattgaagag agagcatata actagccaag       600
     catacatcag ttgcaagcgt tggaagttca agtctgatta ccaacagcct gacacaatag       660
     attttaaatt tttagcagga tttgcgttcg gatttctatc cgcaatccca atttcgatag       720
     caggcatata cttagtctac cttaaaatct cagcccacgt acgcgcaatc gttaatgaat       780
     acgggagggg ttaggagcaa taataatgga aatggtggat cacgtaacac ccgccgtcgc       840
     agacgcccac gacaggttcg ccctgtcgtt gtggtcgcac cccctgggcg cacacggcga       900
     ggaaatcgaa gacgacgaaa tggaggcagg aaccgaagaa gccgaaatag agttggagga       960
     cggtcgagca acagcgagac tttcgtcttc aacaaggact caatcaagga tagttcctca      1020
     ggagctgtca ccttcgggcc gtctctatca gagagcatcg cgctttcagg tggagttctc      1080
     aaagcctacc atgaatataa gatcacaatg gtcaacatac gcttcgtcag tgaatcctct      1140
     tccacagcgg agggctctat cgcttacgag ctggaccccc actgcaagct tactagtctc      1200
     caatccaccc tgcgtaagtt ccccgtcacc aaaggcgggc aagcgacttt tcgggcttcg      1260
     cagattaacg gggtagagtg gcatgataca tccgaagatc aatttaggct gctctacaaa      1320
     ggcaacggga cgaagaacgt tgccgccggt ttcttccaga tccggttcac tgtgcaattg      1380
     c                                                                      1381
//