ID   JX427532; SV 1; linear; genomic RNA; STD; VRL; 1380 BP.
XX
AC   JX427532;
XX
DT   01-JAN-2013 (Rel. 115, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Pepper vein yellows virus isolate pID10 RNA-dependent RNA polymerase (RdRp)
DE   and coat protein (CP) genes, partial cds; and movement protein (MP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Pepper vein yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1380
RX   DOI; 10.1007/s00705-012-1598-y.
RX   PUBMED; 23307365.
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   "Analysis of sequences from field samples reveals the presence of the
RT   recently described pepper vein yellows virus (genus Polerovirus) in six
RT   additional countries";
RL   Arch. Virol. 158(6):1337-1341(2013).
XX
RN   [2]
RP   1-1380
RA   Knierim D., Tsai W.S., Kenyon L.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; d959bcc741619238547c3236f2980cf8.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: ContigExpress v. Jul 31 2006
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1380
FT                   /organism="Pepper vein yellows virus"
FT                   /host="Capsicum sp. (chilli)"
FT                   /isolate="pID10"
FT                   /mol_type="genomic RNA"
FT                   /country="Indonesia:Central Java, Rembang"
FT                   /collection_date="21-Sep-2009"
FT                   /db_xref="taxon:909827"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:K9MDB7"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDB7"
FT                   /protein_id="AFU85574.1"
FT                   /translation="SVAEWMLHDDMVVRNKLTLDLNPTTEKLRSAWLKCICNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKS
FT                   LGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNYIAACVS
FT                   VLNELRHDPDSVALLHQWLVFPVLPQNN"
FT   gene            774..>1380
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             774..>1380
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:K9MDV9"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9MDV9"
FT                   /protein_id="AFU85575.1"
FT                   /translation="MNTGGVRSNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT                   RRRNGGRNRRSRNRVGGRSSNSETFVFNKDSIKDSSSGAVTFGPSLSESIALSGGVLKA
FT                   YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT                   INGVEWHDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQL"
FT   gene            805..1275
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             805..1275
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:K9MC62"
FT                   /protein_id="AFU85576.1"
FT                   /translation="MEMVDHVTPAVADAHDRFALSLWSHPLGAHGEEIEDDEMEAGTEE
FT                   AEIELEDGRATARLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASLLVSNPPCVSSPSPKAGKRLFGLRRLTG"
XX
SQ   Sequence 1380 BP; 368 A; 346 C; 342 G; 324 T; 0 other;
     agcgttgcgg aatggatgct acacgacgat atggtcgtcc gcaacaaact cacactggac        60
     ttaaatccta caacggagaa gctacgatct gcgtggctga agtgcatttg caatagtgtc       120
     ctgtgtttga gcgatggcac gctcctcgcc caaagggtcc ccggagttca aaagtccggt       180
     agctacaaca caagtagctc taattcaagg atccgagtta tggccgccta ccattgtggg       240
     gccgactggg ccatggcaat gggagatgat gccctcgaat cagtcaacac caacctggag       300
     gtgtataaaa gtctaggttt caaagtcgag gtttcaggac aactggaatt ctgctctcac       360
     atctttagag cgcctgacct tgcccttccc gtgaatgagc gcaaaatgct gtacaagctc       420
     atcttcggat acaatccggg aagtgggaat ctggaagtta tttccaatta tattgccgcc       480
     tgtgtatcag tcctaaatga gctgcggcat gacccagatt ctgttgctct ccttcaccag       540
     tggctagtct ttccagtgct gccacaaaat aattgaagag agagcatata actagccaag       600
     catacatcag ttgcaagcgt tggaagttca agtctgatac caacagcctg acacaataga       660
     ttttaaattt ttagcaggat ttgcgtttgg atttctatcc gcaatcccaa tttcgatagc       720
     aggcatatat ttagtctacc ttaaaatctc agcccacgta cgcgcaatcg ttaatgaata       780
     cgggaggggt taggagtaat aataatggaa atggtggatc acgtaacacc cgccgtcgca       840
     gacgcccacg acaggttcgc cctgtcgttg tggtcgcacc ccctgggcgc acacggcgag       900
     gaaatcgaag acgacgaaat ggaggcagga accgaagaag ccgaaataga gttggaggac       960
     ggtcgagcaa cagcgagact ttcgtcttca acaaggactc aatcaaggat agttcctcag      1020
     gagctgtcac cttcgggccg tctctatcag agagcatcgc gctttcaggt ggagttctca      1080
     aagcctacca tgaatataag atcacaatgg tcaacatacg cttcgtcagt gaatcctctt      1140
     ccacagcgga gggctccatc gcttacgagc tggaccccca ctgcaagctt actagtctcc      1200
     aatccaccct gcgtaagttc cccgtcacca aaggcgggca agcgactttt cgggcttcgc      1260
     agattaacgg ggtagagtgg catgatacat ccgaagatca atttaggctg ctctacaaag      1320
     gtaacgggac gaagaacgtt gccgccggtt tcttccagat ccggtttact gtgcaattgc      1380
//