ID JX422022; SV 1; linear; genomic RNA; STD; VRL; 6304 BP. XX AC JX422022; XX DT 03-OCT-2012 (Rel. 114, Created) DT 03-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Youcai mosaic virus isolate SX, complete genome. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6304 RA Niu Y.B., You W.X., Zhang X.M., Zhao H.Q., Zhao B.J., Miao L.J., Zhao X.; RT ; RL Submitted (24-JUL-2012) to the INSDC. RL College of Life Science, Shanxi Agricultural University, Mingxian Street, RL Taigu, Shanxi 030801, China XX DR MD5; 23605b7e8bedf27677fed7bf98682893. XX FH Key Location/Qualifiers FH FT source 1..6304 FT /organism="Youcai mosaic virus" FT /host="Rehmannia sp." FT /isolate="SX" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="01-May-2011" FT /db_xref="taxon:228578" FT CDS 69..4862 FT /codon_start=1 FT /transl_except=(pos:3378..3380,aa:OTHER) FT /product="replicase read-through product" FT /db_xref="GOA:K0DHF2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0DHF2" FT /protein_id="AFT83336.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASDAYPEFEISFTHTQNAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFNNYAENPHFVHCDLPFQQCKLSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVVLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFSASQRYVYHKEFLVTRINTWYCKFTRVDTFTLFRGVYKTSVDSEDFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIVPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGKVVQNEGLSLSNDAP FT FPCVSNLKEGLVPAYGVCPTGGNFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGIVRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRITLRCPADVTFFLNKKYDGAVMCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELEKLSNYILDMYTVESGTQXQLQ FT IDTVFRGPNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDAYVIKEFSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLF FT YTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAE FT VWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIRDENHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYC FT SIIKYLSDKRLFKDLFFV" FT CDS 69..3380 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:K0DF09" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0DF09" FT /protein_id="AFT83335.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASDAYPEFEISFTHTQNAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFNNYAENPHFVHCDLPFQQCKLSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVVLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFSASQRYVYHKEFLVTRINTWYCKFTRVDTFTLFRGVYKTSVDSEDFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIVPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGKVVQNEGLSLSNDAP FT FPCVSNLKEGLVPAYGVCPTGGNFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGIVRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRITLRCPADVTFFLNKKYDGAVMCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELEKLSNYILDMYTVESGTQ" FT CDS 4874..5671 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:H6X0P4" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:H6X0P4" FT /protein_id="AFT83337.1" FT /translation="MSYEPKVSDFLALTRKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSKECIIGTY FT RAAAKDRRFQFKLVPNYFVSVADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAASKAIDSFRKKKKRIGGKDVNNNKY FT RYRPERYAGPNSLQYKEGNDLQHHEPESVPVFRSDVGRAHGDA" FT CDS 5595..6068 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:H6X0P6" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:H6X0P6" FT /protein_id="AFT83338.1" FT /translation="MTYNITNPNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPETGYRVYINSAVLKPLYEALMKSFDTRNRIIETEEELRPS FT ASEVANATQRVDDATVAIRSQIQLLMNELSNGRGLMNRAAFEVLLPWTTAPAT" XX SQ Sequence 6304 BP; 1800 A; 1196 C; 1576 G; 1732 T; 0 other; gttttaattt tattgcaaca acaacaacaa attacaataa caacaaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca aacattgcag gctgccgcag 120 ggcgcaacag cctggtgaat gatttagcct cacgacgcgt ttatgataac gccgtcgagg 180 agctgaatgc tcgttcgaga cgccctaagg ttcatttctc caaatcagtg tctacggaac 240 agacgctgtt ggcttcagat gcttatccgg agtttgagat ttccttcact catacccaaa 300 atgccgtgca ttcccttgcg ggtggcttaa ggacccttga gttggagtat ctcatgatgc 360 aagttccgtt tggttctcta acgtacgata tcggtggtaa ttttgccgca cacctcttta 420 agggacgcga ttacgttcac tgctgtatgc cgaatttgga cgtccgcgac atagctcgtc 480 atgaagggca caaggaggct attttcagtt acctttctcg ccttgatagg cagaaacgtc 540 ccgtccctga atatcagaga gcggcgttca ataattacgc ggagaatcct catttcgtcc 600 attgcgacct accatttcag cagtgtaagc ttagtaccgt taacggtgct gacacttacg 660 ctattgcact tcatagtata tatgatattc ctgctgatga gttcggtgct gcgctactta 720 ggaagaatgt caagatttgt tacgcggctt tccatttcca cgaaaatatg ctcctagact 780 gtgactctgt cgtcctggag gatattggag ccacgttcca gcgtgctggt gacaagttaa 840 atttcttctt ccacaacgag agcacactta attacactca tagttttagt aatataatta 900 agtacgtgtg taagactttc ttctccgcga gtcagaggta tgtgtaccat aaggagttct 960 tagttactag aatcaatacg tggtattgta agtttactag agtagatact tttactcttt 1020 tccgtggtgt gtataagaca agtgtagata gtgaagattt ctataaggct atggacgacg 1080 cgtgggagta caagaagaca ttggctatgc tcaattccga gaggaccatc ttcaaggata 1140 gtgctgccat gaatttctgg tttccgaagg tcagagatat ggttatcgta cctctctttg 1200 atgcatctat cacaaccgga aggatgtcta gaagggaagt attggtaaac aaggactttg 1260 tttacacggt ccttaaccat ataaaaactt atcaagcgaa agccctaaca tacgctaatg 1320 tattatcttt cgtcgagtct attaggtcta gggtcattat taacggtgtc actgccaggt 1380 cggaatggga taccgacaag gcaatcttag gtccgttagc catgacattt ttccttgtca 1440 cgaagttgag tcatgttcag gacgaaatcg tccttaagaa gttccaaaag tttgacgcca 1500 ctgccaaaga actgatttgg tcaagtctct gcgatgccct gaagggggtg ataccctcgg 1560 tcaaggagac gcttgcacgt ggtggttttg tcaagcttgc tgaagagagt ttagaaataa 1620 aaattccaga gttatactgc acttttaccg acaggttagt gcttgagtat aaaaggactg 1680 aggagtttca gtcgtgtgac ctatccaaac ctttggaaga gtctgagaaa tactataatg 1740 ctttatccga gctatccgtg cttgaaaatc tcgactcgtt cgatctggat gcctttaaag 1800 agctgtgtca aaagaagaac gtcgacccgg atgtcgctgc gaaggtggtg gtggcgatta 1860 tgaatagtga actgacgtta ccgttcaaga aacctacaga agaggaagtt gctgaggcgc 1920 ttagcggaaa agtggtacag aatgaggggt tgagtttaag taacgatgca cccttcccat 1980 gtgtgagcaa cctcaaggaa ggtttggttc ctgcgtatgg agtgtgtccg acaggtggta 2040 acttcgacag agtggatatg gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaaaggggc tatgatgtca gcggtgtaca cgggaaagat caaggttcaa cagatgaaga 2160 actacgtcga ttacctaagt gcctcattgt cagctacagt ctcaaacctc tgtaaagtgc 2220 ttagggatgt tcacggtgtt gaccctgaat ctcaagagaa gtccggtgtg tgggatgtga 2280 gaagaggacg ctggttactg aaacctaacg cgaagtgtca tgcttggggt gttgcggaag 2340 atgcaaacca caagttagtt atcgtgttac ttaactggga tgaagggaaa cctgtttgtg 2400 atgagacatg gttcagattg gcagtttcaa gtgactcttt agtgtactcg gatatgggta 2460 aactcaagac gttaacgtca tgttgtaggg atggtgagcc tccagaacct acggcgaaag 2520 tagtgctcgt cgacggtgtt ccaggctgtg gaaaaacgaa ggaaatctta gagaaggtta 2580 acttttccga agatttagtg ttagttcctg gaaaagaggc gtcaaaaatg attattcgaa 2640 gggcaaacca ggcaggcatt gtaagagctg acaaggataa cgtaaggacg gtagattcct 2700 tcttgatgca ccctccaaag agggtgttca aaaggttatt tatcgacgaa ggattaatgt 2760 tgcatacggg ttgtgttaac tttttaacgt tgctatctca ctgtgatgtg gcatacgttt 2820 atggtgacac acaacaaatt ccctttatct gtagggttgc gaatttccct tatcctagtc 2880 attttgcgaa gcttgttgta gacgagaagg aagacagaag aattacgctc agatgtccgg 2940 cggacgttac gttcttcttg aataagaaat acgatggcgc agtaatgtgt acgagctccg 3000 tggagaggtc ggttagtgcg gaagttgtga gaggaaaagg tgctttaaac ccaataacct 3060 tgccgttaga gggaaaaatt ctcactttca ctcaagccga caagtttgaa ttgttagata 3120 agggctacaa agatgtaaac acggttcatg aagttcaagg cgaaacgtac gaaaagacag 3180 ctattgttcg gttaacagca actcccttgg agatcatatc aagagcgtca cctcatgttt 3240 tggtggcgtt aacaaggcac accacaagat gcaaatatta cactgttgtg ctagacccaa 3300 tggttaatgt gatttctgaa ttggagaaac tgtccaacta cattctcgac atgtacacgg 3360 tggagtcggg aacccaatag caattacaga tcgacacagt gttcagggga ccaaatttgt 3420 tcgtccctac gcctaagtca ggagattggc gagacatgca gttctattac gacactcttc 3480 ttcccggaaa cagtactatt ctcaacgaat ttgatgctgt aacgatgaat ttgagggata 3540 tttccttaaa tgtcaaggac tgtaggatcg acttctcaaa atctgtgcaa gtaccaaagg 3600 agcgaccggt ttttatgaaa cccaaattga ggacggcggc agagatgcca cgtactgcgg 3660 gcctacttga aaaccttgtc gcgatgatta aaagaaacat gaacgcaccg gatttgacgg 3720 ggacgattga tatagaggac actgcgtcgt tagtagttga aaagttttgg gatgcgtatg 3780 tgattaaaga attcagcgga acggacggta tggctatgac gagggaaagt ttttctagat 3840 ggctctctaa acaagagtcg tctacggttg gtcagttagc ggatttcaac tttgtggact 3900 tgccggcggt ggacgagtat aagcatatga tcaaaagcca gcctaaacag aaattagact 3960 tgagcattca ggatgaatac cctgcgttgc agaccatagt ctatcattca aaaaagatca 4020 acgcgatttt tggtcctatg ttttcagagt tgacgaggat gctccttgaa agaatagata 4080 cttccaagtt tctgttttac acgaggaaga cgcccacgca gattgaagag tttttctctg 4140 atttagattc gtcacaagcg atggagattt tggagctcga catttcaaag tacgacaagt 4200 cacaaaacga gttccattgc gcggttgagt acaagatatg ggaaaaactt ggtattgacg 4260 attggttggc ggaggtgtgg aaacaaggac acagaaaaac gactctcaaa gattacacgg 4320 ctggtataaa aacatgtttg tggtatcaaa ggaaaagcgg tgatgtgact accttcattg 4380 ggaacacaat tatcattgca gcgtgtttga gctctatgat cccgatggat aaggtaatca 4440 aggcggcttt ctgcggtgac gacagtttga tatatattcc gaaaggtcta gacctaccgg 4500 atattcaagc cggagccaac cttacgtgga actttgaagc caaattgttc aggaaaaagt 4560 acggttattt ttgcggtcgt tacgttattc accacgatag aggagccatt gtgtattatg 4620 atccgctcaa gttgatatct aaattaggat gtaaacatat tagagatgaa aatcacttag 4680 aagagttgcg tagatctctg tgtgatgtaa ctagtaattt aaataattgt gcgtattttt 4740 cacagttaga tgaggccgtt gccgaggttc ataagaccgc ggttggcgga gcgtttgttt 4800 actgtagtat aattaaatat ttgtcagata aaaggttgtt taaagatttg ttttttgttt 4860 gactaagtcg acaatgtctt acgagcctaa agtaagcgac ttccttgccc ttacgagaaa 4920 ggaggaaatt ttacccaagg ctttgacgag attgaagact gtctctatta gtactaagga 4980 tgtcatatct gttaaggagt ctgagtccct atgtgatata gatttgttag tgaacgtgcc 5040 attagataag tatagatacg tgggtgtttt gggtgttgtt tttaccggcg aatggctagt 5100 gccggatttc gttaaaggtg gggtaacagt gagcgtgatt gataaacggc ttgaaaactc 5160 caaggagtgt ataattggta cgtacagagc tgctgcgaaa gacagaaggt tccagttcaa 5220 gctggttcca aattacttcg tgtccgttgc ggatgccaag cgaaaaccgt ggcaagttca 5280 tgtgcgaatt caaaatttga agattgaagc tgggtggcaa cctctagctc tagaggtggt 5340 ttctgttgcc atggtcacta ataacgtggt tgttaagggt ttgagggaaa aggtcatcgc 5400 agtgaatgat ccgaacgtcg aaggtttcga aggtgtggtt gacgatttcg tcgattcggt 5460 tgccgcatcc aaggcgattg acagtttcag gaagaaaaag aaaaggattg gaggaaagga 5520 tgtaaataat aataaatata gatatagacc ggagagatac gccggtccta attcgttaca 5580 gtataaagaa ggaaatgact tacaacatca cgaacccgaa tcagtaccag tatttcgcag 5640 cgatgtgggc agagcccacg gcgatgctta accagtgcgt gtctgcgttg tcgcaatcgt 5700 accaaactca agcggcaaga gatactgtta gacagcagtt ctctaacctt ttgagtgcga 5760 ttgtgacacc gaaccagcgg tttccagaaa caggataccg ggtgtatatt aattcagcag 5820 ttctaaaacc gttgtacgaa gctcttatga agtcctttga tactaggaat aggatcattg 5880 aaactgaaga agagttgcgt ccttcggctt ccgaagtagc taatgcaaca caacgtgttg 5940 atgatgcgac tgtggccatt aggagtcaaa ttcaactttt gatgaacgag ctctccaacg 6000 gacgcggtct tatgaacagg gcagcgtttg aggttttatt accttggact actgcgccag 6060 ctacataggc gtggtgcaca cgacagtgca tagtggtttt ctctccactt aaatcgaaga 6120 gatatactta cggtgtaatt ccgcaagggt ggcgtaaacc aaattacgcg atgttttggg 6180 ttccatttaa atcgaaacct gttatttcct ggatcacctg ttaacgtgcg cgtggcgcat 6240 attacagtgg gaataactaa aagtgagagg ttcgaatcct ccctaacccc gggtaggggc 6300 ccaa 6304 //