ID JX416228; SV 1; linear; genomic RNA; STD; VRL; 6496 BP. XX AC JX416228; XX DT 03-OCT-2012 (Rel. 114, Created) DT 03-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Citrus tatter leaf virus isolate CTLV-Pk, complete genome. XX KW . XX OS Citrus tatter leaf virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6496 RA Chang L., Hung T.-H.; RT "Construction of infectious clones and detection improvement of Citrus RT tatter leaf virus"; RL Unpublished. XX RN [2] RP 1-6496 RA Chang L., Hung T.-H.; RT ; RL Submitted (23-JUL-2012) to the INSDC. RL Phytopathology and Microbiology, National Taiwan University, No. 1, Sec. 4, RL Roosevelt Road, Taipei 10617, Taiwan XX DR MD5; 092a50b5b9daf7c6845e51857ba49035. XX FH Key Location/Qualifiers FH FT source 1..6496 FT /organism="Citrus tatter leaf virus" FT /host="Citrus reticulata pv. ponkan" FT /isolate="CTLV-Pk" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:33759" FT 5'UTR 1..36 FT gene 37..6354 FT /gene="ORF1" FT CDS 37..6354 FT /codon_start=1 FT /gene="ORF1" FT /product="polyprotein" FT /note="contains replicase and coat protein" FT /db_xref="GOA:K0FGH5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:K0FGH5" FT /protein_id="AFU07531.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPVSKMIENHLLYICIPSLLSSFRSVAFFSLRE FT SKVNSFIKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVVGLRDQCLTRN FT KFPKVLFIHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGPSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFNKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRGDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVMVLDKVNFIETRFHARMFEIAEAIGVKLDLLGK FT RFNYETESEEYFSENGYLFIPSKTNPSRNWILNSGSCKIDYTRLIKARRFRLKRDFIDR FT ITAGKVPQRQLFLESGPRSTLESGKNEGKVSSEVETIKDSEVVNVPETSYVPLSTEDGQ FT GFEGSIPIDLINAFEPEEVKLPKRKRKNDCVFKAISAHLGIEVQDLLNFLVNEDISDEL FT LDCIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCEL FT SSKECFVRLLREGGEAQMSNENLNADSLFDLGKFVHSRERAVKLAKSIARGTTGLLNSF FT DPAFCKAMVTLSELFPENFSSVVGLRMGFAGSGKTHKVLQWINYTPNVKRMFISPRRML FT ADEVESQVKGTSCQVHTWETALKKIDGTFMEVFIDEVGLYPPGYLTLLQMCAFRKIVKG FT QSERFLKGKLAELSKTCLSIRCFGDPLQLRYYSAEDTNLLDKTHEIDLMIGTIKHKYLL FT QGYRFGQWFKELIDMPTRVDESKFSRKFFADISSVKTEDYGLILVAKREDRGVFAGRIP FT VATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQKMA FT QKTIWQFVLEGKKIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEVVGDVIEPVEWFKCHVPVFDTDPMLAEIFEKIAAKEKREFQSVLGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKEL FT LSEFLSMLPFEFKVNVKDIENGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSTLK FT RRRGERATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGAEWLSSMLTISSRRSSQLTSKSTQFHHLNCTKMQPFLSQTCSTASKDLSQMSKFLQ FT GQGMDSYCLILNSLTTLRLTPLERKVTNTNIYTMESFWWESKPCCPTLEEWKGGSLYMT FT GLVWTQKGVTSALICSNLSLIVVTLDSDLSTVFQQLMQIWLKDLGSEWILIAHSMNRTR FT NCLLLTLGSHTDVLTQQGFLKPRLVIQGGLRRPLAAAKHSSLMKKSSWPSWITNPRCFW FT RRVHQMCMLKRGCLEATKFEDRAQFLPKGGQIQSCRKREDLGPSQLESKDLEKMSLEDV FT LQQARRYRVGVYLWKTHIDPAKELLMVPPPEGFKEGESFAGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYKLTTTPKQGETEKEEEVREGSSGEKTKIWRIDLSN FT VVPELKTFAATSQHNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT gene 4788..5750 FT /gene="ORF2" FT CDS 4788..5750 FT /codon_start=1 FT /gene="ORF2" FT /product="putative movement protein" FT /db_xref="GOA:K0FB18" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:K0FB18" FT /protein_id="AFU07532.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKLAI FT LDHKSPLFLEEGAPNVHVEKRLFRGDKIRRSRSISAKRGPNSKLQEKRGFRSLSARIER FT FGENEFGRRASTSEALPGRSVSLEDSHRPGKGTSDGSSP" FT 3'UTR 6355..6496 XX SQ Sequence 6496 BP; 1939 A; 1190 C; 1524 G; 1843 T; 0 other; aaatttaaca gcgcttaatt tccgcgctct acgtcaatgg ctttcactta cagaaaccct 60 ttggaaattg caattaacaa acttccaagc aagcaatctg atcaattgct ttccttgacc 120 accgacgaga ttgaaaagac cttggaagtg acaaatcgct tcttttcttt ttcaatcact 180 ccagaagatc aagaactgtt gaccaaacat ggtttgacac ttgcaccaat tggatttaaa 240 tcacactccc atccagtatc caaaatgatt gaaaaccatc tcctgtatat atgtattcct 300 agccttctat cttctttcag atcagttgct ttcttttctt taagagaaag caaggtcaat 360 agttttatta aaatgcattc agtcttctca catggaaaaa tcaagtcttt agggatgtat 420 aatgcaatca tcgatggaaa ggacaaatat aggtatggtg aggtctcttt cacttctttc 480 agagacagag tggttggttt gagagaccaa tgcttgacgc gtaataaatt tccgaaagtc 540 ctcttcatcc atgacgagtt gcacttttta agcccttttg atatggcctt tttatttgag 600 actataccag agattgatag agttgtagct acaactgtct ttccaattga actacttttt 660 ggtgataagg tttcaaaaga acccagggtt tacacttaca aggttcatgg tccctctttc 720 tccttttacc ctgatggtgt tgcctctgaa tgctatgagc aaaatctcgc taactcaaaa 780 tggcctttta cctgtagtgg tatccaatgg gccaacagga agatcagagt taccaaatta 840 cagagtcttt ttgctcacca tgttttttca tttgacagag gaagggcttg caacgaattc 900 aatcacttca ataagccgag ttgcctactt gcagaagaga tgcgtctgct tacaaaaaga 960 tttgataagg ctgtcatcaa caggagcaca gtttcttctc tcagcactta tatggcatgt 1020 cttaagactg caaacgcggc ttcagcggtt gctaagttaa ggcagctgga gaagagagat 1080 ttgtaccccg atgaactaaa tttcgtctat tcttttgggg agcacttcaa aaactttgga 1140 atgagaggcg actttgatgt gtcagtgttg caatgggtaa aagacaagtt ttgtcaggtg 1200 atgcctcatt ttatagctgc tagttttttt gaaccgacag aatttcacct aaacatgagg 1260 aagctgctaa atgacctagc caccaagggg attgaagttc ctttgtccgt gatggttctg 1320 gacaaagtaa acttcattga aaccaggttc catgctagaa tgtttgaaat agcagaggct 1380 ataggggtaa agctggactt gcttgggaaa agatttaatt atgaaactga aagtgaagag 1440 tacttttcag agaatggtta tctctttatc ccctctaaaa caaatccaag taggaattgg 1500 attttaaatt ctggctcctg caaaattgac tacacgcggt tgatcaaggc cagaagattc 1560 agactaaaaa gggatttcat agatagaatt actgctggga aggtccctca acgacagctt 1620 tttctggaat caggtccgag gtcaacgctt gaatccggga aaaatgaggg taaggtgagt 1680 agtgaggttg aaactataaa ggattctgaa gttgtcaatg tgccggaaac atcttacgtt 1740 ccattgtcaa ctgaagacgg gcaaggcttt gaaggttcaa taccaatcga cttgataaat 1800 gcgtttgaac cagaagaagt caaactcccg aaaagaaaaa ggaaaaacga ctgcgttttt 1860 aaagcaatat ctgctcacct aggaattgag gttcaagatc ttttaaactt cctggtcaat 1920 gaggacattt cagatgagct gctggactgc attgaagagg ataaaggttt gtcacatgag 1980 atgattgaag aagttctagt gaccaaagga ctttccatgg tttacacctc tgatttcaaa 2040 gaaatggcag ttctcaacag gaaatatggg gtcaatggga aaatgtactg tacaataaaa 2100 ggtaatcatt gtgagttgag ttcaaaggag tgcttcgtta gactgttgag ggaaggtggt 2160 gaagcacaga tgtcaaatga aaatctgaac gctgactcat tatttgacct tggaaagttt 2220 gtacatagtc gggagagagc ggtcaaattg gcaaagtcta tagctcgagg gaccacaggt 2280 cttttaaatt cctttgatcc agccttctgc aaagccatgg ttactctctc agagctgttt 2340 cctgagaatt tttcttcagt ggttgggttg agaatgggct tcgctggctc tggcaagaca 2400 cacaaggttc ttcagtggat aaactacacc ccaaatgtca aaagaatgtt cattagtcct 2460 agaagaatgt tggcagatga agttgaaagc caggttaaag ggacgtcttg ccaggtccac 2520 acatgggaaa ccgctttgaa aaagattgat ggaaccttca tggaggtctt cattgatgaa 2580 gtgggtttat atccacctgg atatctcaca cttttacaaa tgtgtgcttt tagaaagata 2640 gtgaagggtc agagtgagag gttcctgaaa ggtaagttgg ctgagctatc aaagacatgc 2700 ctaagtatta gatgttttgg tgacccactg caactaaggt attattctgc tgaagacacg 2760 aatctcttgg acaaaacaca tgaaattgac ttgatgattg gaaccattaa gcacaaatac 2820 ctccttcagg ggtacagatt tggtcaatgg ttcaaagaat tgatagatat gccaactaga 2880 gtggatgagt caaaattctc aagaaaattt tttgcagaca tttcaagtgt gaaaactgag 2940 gactatgggc taatattggt ggcaaaaagg gaagataggg gggttttcgc tgggaggatc 3000 cctgttgcca cagtcagtga atctcaaggg atgactatta gcaagagagt gttgatatgc 3060 ctagaccaaa atctatttgc tgggggtgca aatgccgcaa ttgttgcaat cactagatcg 3120 aaagttgggt ttgactttat cctcaaagga aattcactga aagaagtgca aaaaatggca 3180 caaaagacaa tatggcagtt cgtgctagaa ggaaaaaaaa tcccaatgga gaggatagta 3240 aacatgaacc ctggggctag cttttacgag agtcctttgg atgtgggaaa ctcatcaatc 3300 caggacaagg cttcacatga tttgttcata atgcccttca taaatttggc tgaggaggaa 3360 gttgatcctg aggaagtcgt aggagatgta atcgaacctg ttgagtggtt taagtgccat 3420 gtgcctgtgt ttgacacaga tccgatgctt gcagagatct tcgaaaagat tgcggcaaaa 3480 gagaaaaggg aatttcagtc tgtgcttggt ctttcaaatc aattcttgga tatggaaaag 3540 aatgggtgca aaatagacat actgcctttt gctcggcaaa acgtctttcc acatcatcaa 3600 gcttcagatg acgtcacctt ctgggcaggt gttcagaaaa gaatcagaaa gtcaaattgg 3660 aggcgagaaa agtcaaaatt tgaggaattt gaaagtcagg ggaaagaatt gctttctgaa 3720 ttcttgtcaa tgctgccatt cgagttcaaa gtgaacgtca aggatattga aaatggggag 3780 aaaagttttc tggagaaaag aaaactaaag tctgagaaga tgtgggccaa tcattcagaa 3840 aggtctgata ttgactggaa gcttgaccac gtcttcctct tcatgaaatc tcaatactgc 3900 accaaggagg gcaaaatgtt cactgaagca aaagctggtc aaaccttggc atgtttccag 3960 cacattgtcc tttttcggtt tggtcccatg ctaagggcaa ttgaaagtgc tttccttaga 4020 agctgtgggg attcatatta tatacactca ggaaagaatt tcttttgttt ggacagcttc 4080 gtgaccaaga atgcaagtgt tttcgatgga ttttcaattg agtccgacta cacagccttt 4140 gactcatctc aagaccacgt tatcttggct tttgagatgg cattactgca gtatttgggc 4200 gtgtcaaagg agtttcagct ggattacctt agattgaaat taactctcgg gtgcaggctt 4260 gggtccttag ctataatgag atttacaggg gagttctgta cttttctgtt caacacattt 4320 gccaatatgc ttttcactca gctgaagtat aaaatagatc cgaggagaca cagaattctg 4380 tttgctgggg atgacatgtg ctcattgagc actcttaaaa gaaggagagg ggagagggcc 4440 acaaggctgt tgaagagttt ctctctcact gctgtagagg aagtaagaaa attcccaatg 4500 ttctgtgggt ggtacttgag cccttatggc atcatcaaat ctccaaaact gctttgggca 4560 agaattaaga tgatgagtga aagacaactt ctcaaggagt gcgtagacaa ttacttgttt 4620 gaagcaatat ttgcctacag attaggtgag aggctttaca caattctgaa agaagaagat 4680 tttgagtacc actaccttgt gattagattt tttgttaaaa attcaaagtt actgactggt 4740 ttgagcaaga gtcttatctt cgaaattggg gaaggtattg gagcagaatg gctatcgtca 4800 atgttaacca tttcctcaag gaggtcgagt caactgacct caaaatcgac gcaatttcat 4860 catctgaact gtacaaagat gcaacctttt ttaagccaga cgtgctcaac tgcatcaaaa 4920 gatttgagtc aaatgtcaaa gtttcttcaa ggtcagggga tggactcgta ttgtctgatt 4980 ttaaactcct tgacgacact gagattgact ccattagaaa gaaaagtaac aaatacaaat 5040 atttacacta tggagtcatt ttggtgggaa tcaaagccat gctgcccaac tttagaggaa 5100 tggaagggag ggtcattgta tatgacgggg cttgtctgga cccagaaagg ggtcacatct 5160 gctcttatct gttcaaattt gagtctgatt gttgttactt tggactcaga cctgagcact 5220 gtctttcaac aactgatgca aatttggcta aaagatttag gttcagagtg gattttgatt 5280 gcccacagta tgaacaggac acggaactgt ttgctcttga cattggggtc gcatacagat 5340 gtgttaactc agcaaggttt cttgaaacca agactggtga ttcagggtgg gcttcgcagg 5400 ccattagcgg ctgcgaagca ctcaagttta atgaagaaat caagttggcc atcctggatc 5460 acaaatcccc gctgtttctg gaggagggtg caccaaatgt gcatgttgaa aagaggctgt 5520 ttagaggcga caaaattcga agatcgcgct caatttctgc caaaaggggg ccaaattcaa 5580 agctgcagga aaagagagga tttaggtccc tctcagctag aatcgaaaga tttggagaaa 5640 atgagtttgg aagacgtgct tcaacaagcg aggcgctacc gggtaggagt gtatctctgg 5700 aagactcaca tagacccggc aaaggaactt ctgatggttc ctccccctga aggattcaaa 5760 gaaggtgaaa gctttgctgg cagagagctt taccttcttc tctgcaatca ctattgtaaa 5820 tatttatttg gaaatattgc tgttttcggg tcttctgata agacccagtt tcccgctgtc 5880 ggttttgata ctccaccagt tcattacaaa ttgacaacga ccccaaaaca aggggaaact 5940 gaaaaagagg aggaagtcag agaagggtcg tctggcgaaa aaactaagat ttggaggatc 6000 gacttgtcaa atgttgtccc tgagttgaaa acctttgctg ccacttctca gcataactct 6060 ctgaacgaat gtacgttccg gaagctttgc gagccttttg ctgatttggc tcgtgaattt 6120 cttcatgaac ggtggtccaa aggattggcc accaacatat acaagaaatg gcccaaagct 6180 tttgaaaaaa gcccatgggt ggcatttgat tttgccactg gtctgaaaat gaatcgtcta 6240 acacccgatg aaaaacaggt gattgacaga atgaccaaga ggctttttcg tactgaagga 6300 cagaaagggg ttttcgaggc gggttcggag agtaacttgg aactggaggg ttaggagtcg 6360 tttaaaattc cgcaaacttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6420 aataaagggt tcccccggtt ttctgtgcat ttccgggtta gtgtggtttt tctagagtct 6480 agagtttgtc cactct 6496 //