Dbfetch
ID JX415196; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC JX415196; XX DT 20-MAY-2013 (Rel. 116, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato severe rugose virus isolate ToSRV-[BR:780Tom3:08] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2591 RX DOI; 10.1094/PHYTO-07-12-0174-R. RX PUBMED; 23489523. RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.; RT "A study of weeds as potential inoculum sources for a tomato-infecting RT begomovirus in central Brazil"; RL Phytopathology 103(5):436-444(2013). XX RN [2] RP 1-2591 RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.; RT ; RL Submitted (23-JUL-2012) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; a6129b21b77073bcbc00ddb6c338d305. XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="ToSRV-[BR:780Tom3:08]" FT /mol_type="genomic DNA" FT /country="Brazil:Goias, Luziania" FT /collected_by="Sarah S. Barreto" FT /collection_date="2008" FT /clone="780/Tom3" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="CP" FT /note="V1" FT /db_xref="GOA:R4QDT0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:R4QDT0" FT /protein_id="AGL72268.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDETIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923..1321) FT /codon_start=1 FT /product="REn" FT /note="C3" FT /db_xref="GOA:R4QFY6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R4QFY6" FT /protein_id="AGL72269.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINKVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="Trap" FT /note="C2" FT /db_xref="GOA:K7WZH3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZH3" FT /protein_id="AGL72270.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:R4QRI6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R4QRI6" FT /protein_id="AGL72271.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTKAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNNVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1KG79" FT /protein_id="AGL72272.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNPMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2591 BP; 658 A; 531 C; 600 G; 802 T; 0 other; accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag tgattgtctg 60 tggcccaatc atattgggcc tgtcgagctt agatatttgt aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acatacactt tacttttgct ttaattcaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattatt 240 ctccccgtgc aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 300 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta acggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagacc atcaagttga 540 agaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tattcctcac 600 ctatggattt tggccaggtg ttcaacatgt ttgataacga gcctagcact gcaactgtta 660 agaacgatct tcgggatcgt tttcaggtca tgcacaagtt ttatgccaag gttactggtg 720 gacagtatgc cagtaatgag caggcattag tgaagcgctt ttggaaggtc aacaacaacg 780 tagtctacaa ccatcaggag gcagggaaat acgagaatca tactgagaac gccttgctat 840 tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 900 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga ttttccagta 960 cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taatcgatct agatacaata agactaaata tttaaatcta gttaaatatg 1080 tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1200 cggtgtacat tggatcctcc actttgttta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620 aagcaattct ttccagtgct ttaactttag atagtgcggt gcgatgtcat caatgacgtt 1680 atattcaaca ttatttgaat aaaccctagg attgaaatct aggtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 agcttgcatc tctctcggta cgctagtgaa agaggagagg ggaaacgtag gggcccatgg 1920 ctccggagcc tttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980 gaacttttca ggcagcttct cacggattat ctgcagggcg acgtctttgg aaggtgcgtt 2040 caaggcttct gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc 2100 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg atttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggagac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgccc tcaaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc tctgcaaacc ttgatgaact tcttatttgt 2340 aggagtgttt agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaatagttct tcgcttttat ttgaaagcgc tttggagctg atggcatatt 2460 tgtaaatatg acccttacta ccaattggta gctgctctaa aactcatatg aattggtagt 2520 tatggtagct cttatatagt agaagttctt taaggagatt gctacacgtg gcggccatcc 2580 gttataatat t 2591 //