ID JX402759; SV 1; linear; genomic RNA; STD; VRL; 7568 BP. XX AC JX402759; XX DT 11-JUN-2013 (Rel. 117, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Grapevine virus E isolate WAHH2, complete genome. XX KW . XX OS Grapevine virus E OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7568 RX DOI; 10.1007/s11262-012-0872-0. RX PUBMED; 23296875. RA Alabi O.J., Poojari S., Sarver K., Martin R.R., Naidu R.A.; RT "Complete genome sequence analysis of an American isolate of Grapevine RT virus E"; RL Virus Genes 46(3):563-566(2013). XX RN [2] RP 1-7568 RA Alabi O.J., Poojari S., Sarver K., Martin R.R., Naidu R.A.; RT ; RL Submitted (18-JUL-2012) to the INSDC. RL Department of Plant Pathology, Irrigated Agriculture Research and Extension RL Center, Washington State University, 24106 N. Bunn Rd, Prosser, WA 99350, RL USA XX DR MD5; dd5f5a35d5f4e4e7423623efc477be47. XX CC ##Assembly-Data-START## CC Assembly Method :: Vector NTI v. Advance 11; BioEdit v. 7.1.3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7568 FT /organism="Grapevine virus E" FT /host="Vitis vinifera L. cultivar Cabernet Sauvignon" FT /isolate="WAHH2" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="2006" FT /db_xref="taxon:516956" FT CDS 66..5165 FT /codon_start=1 FT /product="replicase" FT /note="contains methyl-transferase, helicase, DExD, alkB FT and RNA-dependant RNA polymerase domains" FT /db_xref="GOA:R9R7R7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:R9R7R7" FT /protein_id="AGL40609.1" FT /translation="MSLGASSQRVAYANLYANVGSDKLSEVRDRKAKSIDDIESYANNL FT FDYYVSDDVHDFLAAKGLPLSVNCFRAHSHPISKMIENHFIFNLIGNNLTKDSTFVSFK FT EEKLVVLKSKKNRLDGNMAIINRIIHAKDALRYKDPLRNIWFDEDPVSLRNLRDSTRVV FT IHDEVHYWGLYDFQKFLCLINCPLVYSIIYPAELHNGYTFSLYPDLYEFILSPDGKTFT FT WKPDGKSSGSYRQPVNSWLLSTNKTMDLNGRTWTITKLESIGSHHLFLCTLGDLVTESE FT AIYDDYSLVDPRLFSNLEQRMPKLRASYMHKVIHYLMALKKPDAASAVSKLRQLARGDE FT TTDEMIFSGVVATQIAELKYFSEVGGLIDLSKFMKVGFARFFGQQVEYILNKKWYHLDS FT FTQMVKLMVKAEVVIKMGYKPVVGGNQNILVEPLVDGLSNRLKSVGLQALEDLAEPGVP FT ERSRSPYSFIYNDGERMCDAGDPVLELAEFKKMLGHPKNIFEQKWCFYPTKPADGSNFT FT YQEVAKNIYIRVYLIANPEPHVLLLEGLIDLEEYKRMVSAQPTRQTVVTMVEEVTQKPE FT EEEKFEQSMEKLREVRNNLCLIKPIADHFGLPVPVVISKATVEMPNFSRYLNEEGLSMP FT GLYMLCKNMNLTLSILADSGYLHVQGAYKPLGLRITGDHAVPYRYIKSNNDPSDALMVN FT PGVGSMEIEVSSTYAAKLQASFEKGFTGLKLNDFGGKWTNKKKLGRVENLTVSTCFGFA FT GSGKTSGITQMLKLGHGMEVVVVSPRRALSEEWKKELKETDVKVFTFENYFLKHNHKAD FT LLILDEVPLLPPGYIDLVHFSKPVGHIMILGDPLQTSYHADSDAITLAEVEGDIFKRLR FT PISKGKCACGLTVVPCKFNGEAPKFDFSAADQLKGRKGLFYSKGGEGYKYNGGQHESRG FT WLDTLDAIVESCGYCANDFDHCLVQEYVAGGSIGAHSDDEPIYPLDNPILTVQLSGSST FT FTLSCKKGDTALELDGAQFFLMPNGCQRSHKHAVKAHEHRISLTFRSTRPLELMSVKEL FT GVPYLFLTNRLSAEQNILGVPSFGSGHFEVKEVKKLSKELLTLCFSRATVEEEQKNLDI FT CTVGQAQGLSRDVIQLYFDSGAMKCSDEVVITALTRARKGIHMFFKVSRNDLKKCASEF FT LREFIISGKIKEGNMLAKIEAKLGNCKFTRRNVHIGSGSAEIEEHLKGDPGLKAMLLIL FT EAEEMEPEFMQQEVVPETIRTHLALSTFHNEQFASELKAKENREHYLYGTGYSTQIRDD FT KDSEYHPGPSAPSSIYLHHTADDDVLFYLSIKKRLRFADYEKNARSFRLKEKLGQSIFS FT EFLKRADFMNFTYPPAVDETQMALDFTMKRIQKSASILEAHSYRSDADWPSNYLKLFIK FT NQDCTKMEKRGSDAKAGQTIACFSHAVLCKFGPILRKTEAQLRAILPPHVLIFSQKNYD FT DLNTWSKRYFDDFSGTDSDYEAFDRSQDGAILSFEICLLKHFLWPEELIEEYKTLKLMM FT GCQLGDLAVMRFSGEFGTFFFNTMCNMAFTYLRYFIGPNQPIAFAGDDMVAPGQLIVNN FT TMSSILNQLELKAKVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKKAEGKLEDCLAN FT YALEASYGYRLSEHLCELNIDLDAFQELIRKIVMLKGRLPKQIASLFDDSDDIISSDED FT LE" FT CDS 5172..5747 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:R9R7S3" FT /protein_id="AGL40610.1" FT /translation="MQARQLVRSKFDSLTLANKLNRLTLEEVALEPELFNPLYFLENED FT QRTLLLNQLVWQLSTSPDSEKLCVFRVQQIGRLACVAYDFDSSSIREIFLYSNFSQHNL FT GELYRFIGCEYLDSCYISELGGKCTLVTQSGNRVSIDVSLDHIVGIIRRLETLCVVIKP FT VSPKPVNAPYMFQGKPSSYKNAPPLPFG" FT CDS 5768..6574 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:R9R7A7" FT /protein_id="AGL40611.1" FT /translation="MERAEIKAFKVKNRKNGLENFKEMRAVIDKGRVYDEELLDKLFGK FT STVLKSSVSSEVFVVNGKVCTEIELVAEGVTDGIEKEKTPFMHVGCIVIGFMSLARSSS FT GTYKVVIQDDRLKGENKNICAFKFSAQDKVAAFADFPDYCLAVEDLCSGFSIRVLIESE FT DTGFEDNAHPLAINIIGICKFLDDTLETKMIIKKHGKHMYQRICATEVLDPNIGTLQEN FT PTALIDDALMSDVRKAIEKANGVKSDPIRSHDRVRGKDPGIHSRTH" FT CDS 6495..7094 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D7PQS6" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:D7PQS6" FT /protein_id="AGL40612.1" FT /translation="MESKAIRSALMTVFAAKIPGFTAEPTNPEQVSMNNNILANLFGNI FT AIIGTSASVLSYPISVPCYNLESGRILGAETVGEPLKVAQLVMYMIAVRNSTVDPPLAN FT LTLRQMCTPFAPEAYLFLRTAASSKIYTQLARKMTRIGNKEPQVVFDFAKGLPLSSLTR FT SEASCIQVMHQRLFRTEGAKAVFDAQSQVGESSVEV" FT CDS 7112..7462 FT /codon_start=1 FT /product="putative nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:R9R762" FT /protein_id="AGL40613.1" FT /translation="MGSAYLGESRSAAKRRAVRYGRCYCCGRLECNGNVRTTMSQDQVK FT QAIRTPATRFLTENEGNYKNAAINLALSDLVRMGKSEYPYKFKYNKAPMGMRSPEETPE FT FYFWNDSDFNAT" XX SQ Sequence 7568 BP; 2303 A; 1388 C; 1862 G; 2015 T; 0 other; gaaaatacgt acatagtttc cgccctttgg ctttatccta aacattcagt tcgtaaagat 60 caagaatgtc tctaggagcg agttcacaga gggtggctta tgccaacttg tacgcaaatg 120 taggtagtga caaattatct gaggtaagag ataggaaagc taaatcaatc gatgacattg 180 agtcatatgc taataatcta tttgattatt atgtatctga tgatgttcac gatttcttag 240 cagcaaaggg gttacccctt tctgttaatt gcttcagagc tcatagtcac cctatatcaa 300 aaatgataga aaaccatttt atttttaatt tgataggcaa taatttaact aaagatagta 360 cttttgttag tttcaaagag gaaaaattag ttgttttaaa atcaaagaaa aatagattag 420 atggtaatat ggctattatt aatagaataa ttcacgcaaa ggacgcttta agatataagg 480 atccactcag aaacatatgg ttcgatgagg atccagtgtc tttaaggaat ttgcgagata 540 gtactagagt agtaatacat gatgaggtac attattgggg tttgtatgat ttccaaaaat 600 tcttatgcct cattaattgc ccattggtat atagtattat ttacccggct gagctccata 660 atggatacac tttctctctg tatccagatt tgtatgagtt cattttaagt ccagacggga 720 aaacattcac ttggaagcca gatgggaaat cttcagggtc atataggcaa ccagtgaatt 780 cctggctctt gagcacaaac aagaccatgg atctgaatgg gaggacatgg accataacaa 840 aattggaaag catagggtcc catcacctct ttttgtgcac gcttggagat cttgtgactg 900 aatctgaggc catatatgat gactattctt tggtggatcc tcgattattc agcaatcttg 960 aacaaagaat gccgaaattg agagcgtcct acatgcataa ggttattcat tacttgatgg 1020 cgctcaagaa gcccgatgcc gcttcagctg tgagcaaact caggcaatta gctagagggg 1080 atgaaaccac tgatgaaatg atatttagtg gggtggttgc aacccagata gctgagttga 1140 aatacttcag cgaagttgga ggtttaatag acctgagcaa attcatgaaa gttggatttg 1200 ccagattctt tggccaacag gttgagtata ttctgaacaa gaagtggtat catttggata 1260 gttttactca aatggtaaaa ctgatggtta aagctgaagt ggtgataaag atgggttaca 1320 agccagtcgt ggggggcaat cagaatatac tagtggaacc actggttgat ggtttaagca 1380 acagattaaa atcagttgga ttacaagctc tggaggatct ggccgaacct ggtgttcctg 1440 aacgttcaag aagcccttac tctttcatct ataatgatgg ggaaaggatg tgtgatgctg 1500 gtgatccagt cttggaattg gctgaattca agaagatgct tgggcaccca aagaacattt 1560 ttgaacagaa atggtgtttc taccccacaa agccagccga tgggagcaac ttcacatatc 1620 aggaagtggc gaagaacata tatatccgtg tgtacctcat agcaaaccca gaacctcatg 1680 ttctactttt agaggggttg atagatctag aggagtacaa acggatggtg tctgcacaac 1740 caactaggca gacagttgtg actatggtgg aagaggtaac tcagaaacct gaagaagaag 1800 aaaagtttga gcaaagcatg gagaaattga gagaggtgag gaacaatttg tgccttatca 1860 aaccaatagc tgatcacttt ggtttgcctg tgcccgtggt aataagcaaa gcaacagttg 1920 agatgccaaa cttctcaagg tacctcaatg aggaaggtct gagcatgccc ggcttataca 1980 tgctatgtaa gaacatgaat cttacactga gtatactggc tgattctggc tatctccatg 2040 tgcagggagc ttacaagcca ttagggctca gaataacagg tgatcacgcc gttccttaca 2100 ggtacataaa gtcaaataat gatccctcag atgcattgat ggtgaatcct ggtgtgggtt 2160 caatggagat agaagtatca tccacctatg cagcaaagct ccaagcatct ttcgaaaagg 2220 gatttacagg gttaaagctg aacgattttg ggggtaagtg gactaataag aagaagctcg 2280 gaagagttga gaatctgact gtaagcacat gttttgggtt tgcgggctca ggtaaaacca 2340 gtggtattac tcagatgctc aaactcggcc atggaatgga ggttgtggtg gtaagcccac 2400 gaagagctct aagtgaagaa tggaagaaag aacttaagga aacggacgtg aaagttttca 2460 cgttcgagaa ttacttcctg aagcataatc ataaggcaga tctcttgata ctggatgaag 2520 tgccactttt acccccgggg tatattgacc tggttcactt ttcaaaacca gtggggcata 2580 taatgatact tggggaccct ttgcaaacga gttaccatgc agatagtgat gccataactt 2640 tggcagaggt agagggtgac attttcaaaa ggttacgtcc aatatctaag ggcaaatgcg 2700 cttgtgggtt aactgtagta ccttgcaaat tcaacgggga ggcaccaaag tttgattttt 2760 cagcagccga tcaattgaaa gggagaaagg ggctcttcta cagtaagggg ggtgagggct 2820 acaagtataa tgggggccaa catgaatcaa gaggatggct ggacactttg gatgctatag 2880 ttgaatcttg cggctactgt gcaaatgatt tcgatcattg cttggtgcaa gaatatgtgg 2940 ctggaggatc aattggtgcc cattctgatg atgaacccat ttatccattg gacaacccaa 3000 tattaacagt gcaactgagc ggttcttcca ctttcacatt gagttgcaag aaaggtgaca 3060 ctgcactaga gctggatggg gcacaattct tcttgatgcc aaatgggtgc caaagaagtc 3120 acaaacatgc agtgaaggca catgaacaca gaatcagcct aaccttcagg agtactagac 3180 cattagagtt gatgtcagtg aaggaattag gtgtgccata cctcttttta acaaatcgtc 3240 tgtcagctga acaaaatatt ctaggtgtcc cttcattcgg ttctggccac tttgaagtga 3300 aagaggtgaa aaaactgagc aaagagcttt taacattgtg ctttagcagg gccacagtgg 3360 aggaggagca gaaaaatctt gatatatgca ccgttgggca ggctcaaggt ctgagcagag 3420 atgtgatcca actatacttt gattcaggag caatgaaatg ttcagatgag gtggtgatca 3480 cagccctgac aagagctagg aaagggatac acatgttctt caaggtgagc agaaatgatt 3540 tgaagaaatg tgcatcagaa tttctaaggg aattcataat cagtggtaag atcaaggaag 3600 ggaacatgct ggcgaagatt gaggccaagt tggggaactg taagttcaca aggagaaatg 3660 tgcatatagg atcaggaagt gctgaaattg aggaacatct aaaaggggat cctggtctaa 3720 aagcgatgct cttgatacta gaggccgagg agatggagcc agagttcatg cagcaggagg 3780 tagtgcctga aaccatccgc actcatttgg ccctgagcac ctttcacaat gaacagttcg 3840 catctgaatt gaaagcaaag gagaacaggg agcattatct gtatggcacc ggttattcca 3900 cacaaattag ggatgacaag gattcagagt accacccagg tccatcagct ccaagttcaa 3960 tctatctcca tcatactgct gatgatgatg tgctcttcta tctgtcaatc aagaagcggt 4020 tgagatttgc ggactatgaa aagaacgcaa gatcgttcag gctaaaagaa aagctgggcc 4080 aatccatatt cagcgaattc ctgaagaggg cagatttcat gaacttcacc tacccaccag 4140 cagtggatga gactcagatg gcccttgatt tcacaatgaa gagaattcag aaaagtgcaa 4200 gcatattgga ggctcatagt tatcggtccg atgctgattg gccaagcaat tatctcaagc 4260 tgttcatcaa aaatcaagat tgcacaaaga tggagaaaag gggttctgat gcaaaggctg 4320 gccagaccat tgcctgcttc tcccatgctg ttttatgcaa attcgggcca attctgagaa 4380 aaactgaggc tcaattgagg gcgatcttgc caccacatgt gttgatattt tctcaaaaga 4440 attatgatga tctcaacacc tggagtaaga ggtactttga tgactttagt ggcacagata 4500 gcgattatga agcttttgac agatcacaag atggtgctat cttatctttc gagatatgtc 4560 tgctgaagca ctttttgtgg cctgaagagc tcatagaaga gtacaagact ctgaaactga 4620 tgatgggctg tcaattgggc gatttggctg tgatgaggtt ctcgggggaa tttggcacat 4680 tcttctttaa cacaatgtgc aacatggcct tcacctactt gaggtatttc ataggaccga 4740 atcaacccat agcatttgct ggggatgaca tggtggcacc aggccaactc atagtaaaca 4800 ataccatgag ctccattctg aaccaacttg agcttaaagc aaaggtgaat tacagtgatt 4860 cacctttatt ctgtggttgg agaatgagcc catatggtat tgttaaggac cctaatctat 4920 tactggatag gctggagatg aaaaaggctg aaggtaagct ggaagactgt ttggccaact 4980 atgcccttga ggcaagttac ggttacaggt taagcgaaca cctttgtgag ctgaacatag 5040 atcttgacgc cttccaggaa ttgattagga agatagtgat gctcaaagga agattgccaa 5100 aacaaatagc atcactattc gatgattctg atgatataat aagctctgat gaggatttag 5160 aatagcagta gatgcaggca aggcagctag ttaggagtaa gtttgatagt ttaactttgg 5220 ccaataaatt gaataggtta acactagagg aggtagcttt agaacctgaa ctgtttaacc 5280 cactgtactt cttagagaat gaggatcagc gcaccttact gttaaaccaa ttggtttggc 5340 agttaagtac cagtcctgat tcagagaagt tgtgtgtgtt tagggttcag cagataggta 5400 ggttagcctg tgtagcctat gatttcgata gtagcagcat tagagagatt ttcttatata 5460 gtaattttag tcagcataat ctgggtgagc tctacaggtt tattggatgt gaatacctcg 5520 actcctgcta catttcagaa ttgggtggaa agtgcacatt ggtgacgcaa tcaggaaata 5580 gggtgagcat tgatgtttca ctggatcata tagtggggat aattaggaga ttggagactc 5640 tgtgcgtggt tattaaacca gtatcgccaa aacctgtcaa tgccccttat atgtttcaag 5700 gtaaaccatc atcctacaag aatgcacctc ctttaccctt tggctaagct accgccacta 5760 aactgaaatg gagcgcgcag agatcaaagc attcaaggtg aaaaaccgca agaatggtct 5820 cgagaatttt aaggagatgc gggctgtgat cgacaaaggg agggtgtatg acgaagagct 5880 attggacaag cttttcggaa aatccaccgt cttaaaatcg tctgtgagta gcgaggtgtt 5940 cgtggtcaat ggcaaggtct gcactgagat agagcttgtg gctgagggtg tgacagatgg 6000 gatagaaaag gagaaaacac cattcatgca tgtggggtgc atagtcatag gtttcatgag 6060 tctggcaaga tcctcatcag gcacatacaa ggtggtcata caggatgata ggctcaaagg 6120 ggagaacaag aacatttgtg cattcaaatt ctctgctcag gataaagtag cagcatttgc 6180 tgatttcccc gactattgcc tcgccgttga agatctttgc tcaggtttct ccattagggt 6240 gttgattgag agtgaggata ctggattcga ggacaatgcc caccctttgg ccataaatat 6300 cattggtata tgcaagttcc tagatgatac acttgagacc aagatgatca ttaaaaagca 6360 tgggaagcat atgtaccagc gaatatgtgc cactgaggtc ctagatccaa acatagggac 6420 tttgcaagag aatccaaccg cacttattga tgatgcactt atgtctgacg tgcggaaggc 6480 aattgagaaa gccaatggag tcaaaagcga tccgatccgc tctcatgacc gtgttcgcgg 6540 caaagatccc gggattcaca gcagaaccca ctaacccaga gcaggtatcc atgaacaata 6600 atatattagc taatttgttt gggaatatag caataatagg tactagtgcg tcggtcttgt 6660 cttacccaat atctgtccct tgttataacc tggagtctgg tcgtatttta ggagctgaaa 6720 cggtgggtga accactcaag gtggcccaat tggtgatgta catgatagcg gtgaggaatt 6780 ctactgtaga tccccctctt gctaatctga ctctacgtca aatgtgcaca ccattcgccc 6840 cagaggcata cctcttcttg aggactgctg caagctcaaa aatatacact cagctggcta 6900 ggaaaatgac aaggataggt aataaagagc cgcaagtggt ctttgacttt gcaaaaggtc 6960 tgcccttaag ctccttaact cgaagtgagg ctagttgcat ccaagtgatg caccagaggc 7020 tctttcgaac agaaggcgcc aaggcagtat ttgatgctca gtcacaggtt ggtgaaagct 7080 cggtggaagt ctagactaag tcaattaagg tatgggtagt gcatatctag gtgagtctcg 7140 tagtgctgca aaacgtagag cggtaaggta tggtaggtgt tattgttgtg gtagattaga 7200 atgtaatggt aatgtgcgca caactatgtc acaagatcaa gttaagcagg ccataagaac 7260 cccggcgact aggtttttaa ccgaaaacga gggtaattac aaaaatgctg caatcaactt 7320 ggctcttagt gatctagtaa gaatggggaa gtctgagtac ccatataagt ttaaatacaa 7380 taaagctcca atgggtatgc gcagcccaga ggaaacgcca gaattctatt tctggaatga 7440 tagtgatttc aacgcaactt aggcgtgttg gttgattgac cctactaata gtcaatcttc 7500 tctggttagc ttagccccca gggaatactg tcatagggcg aaataacaga aacggtacat 7560 accgtttt 7568 //