ID JX401538; SV 1; linear; genomic RNA; STD; VRL; 2744 BP. XX AC JX401538; XX DT 14-JAN-2013 (Rel. 115, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Sclerotinia sclerotiorum mitovirus 4 RNA-dependent RNA polymerase gene, DE complete cds. XX KW . XX OS Sclerotinia sclerotiorum mitovirus 4 OC Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2744 RX DOI; 10.1016/j.virol.2013.03.002. RX PUBMED; 23541082. RA Khalifa M.E., Pearson M.N.; RT "Molecular characterization of three mitoviruses co-infecting a RT hypovirulent isolate of Sclerotinia sclerotiorum fungus"; RL Virology 441(1):22-30(2013). XX RN [2] RP 1-2744 RA Khalifa M.E.; RT ; RL Submitted (19-JUL-2012) to the INSDC. RL School of Biological Sciences, Auckland University, R338 Thomas building RL 110, 3A Symonds street, Auckland 1010, New Zealand XX DR MD5; b3911eba04761b6f6ed6092884043d79. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Sclerotinia sclerotiorum mitovirus 4" FT /host="Sclerotinia sclerotiorum str. 16235" FT /isolate="NZ1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2005" FT /db_xref="taxon:1279100" FT 5'UTR 1..464 FT CDS 465..2660 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:L7SU43" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:L7SU43" FT /protein_id="AGC24233.1" FT /translation="MNNKIRNIIIIRLLRLCFNFNNNTWEITRFLETFDEMRQKSGLKY FT TIKYYKAVKLHITRYICGQPLLSNKEGVALDHSGWPKKFLYLKKFIKTNKELRILLTLL FT SFTRTIVPNKKEELKIKPDYSTIDAPYKGKVYTIPAWFIKNWISKHNLKADLPTYDVKD FT HYVSMKSSPNGPATHSSLWSILSLSYPQLQNISTMLGTYRDEFFKFYSTAWNNDFNKSG FT DIINPKWTNYTGKLSIVKDPELKRRVIAMVDYHSQFTLKPIHEMLLNKLSTLKCDRTFT FT QDPKHSWYQNHHKFYSLDLSAATDRFPLQLQKKLLSYIYENKQFCDAWADLLTSRPYID FT SDGNQHFYNVGQPMGAYSSWAAFTISHHLVVAWAAHLCGEYNFSQYIILGDDIVIKNDK FT VANKYITIMTRLGVDISINKTHVSKDTYEFAKRWIKGGIEVSGIPLKGILNQWKNPGVV FT YTTLCSYFDKNPIQPIPLINLMCELYNKLPFGKRRNSFNQMHKMLYDFHHAMRYSLDKL FT TYDELRAYLCNKAREDSFMVPGNNIILHFMKLLLSGGMVSEAEKVSRQILSEYTRIENK FT FKTSYDDLNVLSGYPLLNGYYNHLSSMKDKIIKWENDPNTTLIDSALSLRVEKFDKIAN FT LHRNKTESISTLSKLWKLSMKGLWRERIEDDFEYMTFISRINQDTTDSLLPVYTWESVL FT DNNIQFTLNQLKPLISGNIVKVEKNSWENLDWGDFKV" FT 3'UTR 2661..2744 XX SQ Sequence 2744 BP; 1025 A; 389 C; 445 G; 885 T; 0 other; ccgattctcc taatctatta ctagatcagg agaatcccga aaatcggaca acttcgaata 60 agaagttgtg gttagattaa tcaaagttaa gattaattga atcttattcc cgttatcatt 120 ttcatcaaca agactcaaga aggaaatgac attatgtcta tctcttgatg agttatggaa 180 acgcgaaatt ggataagagg taggctgcga tataagagta tatcaaatta tcagtcattg 240 agattaagtg accacggcgt gacgattagg gctacctaca ggtagacagc catctaacgc 300 gacagtagtg gaagtcagct tatgatcagt gaaaattgaa tttgttcact atcttttgga 360 gtaactggcc aagccaaaat atacaatctt tttatatgaa gattgaagta ttggacttgg 420 acggtacgta gagttaactg actctatcta aatgcaagaa tctcatgaat aataaaatta 480 gaaatataat cataataagg ttattaagac tatgtttcaa ttttaataat aatacatgag 540 aaattactcg gtttttggaa accttcgatg aaatgaggca gaagtcgggc ctaaaatata 600 cgatcaagta ttataaagct gtgaagcttc atattacaag atatatatgt ggtcaacctc 660 tgttgtcaaa caaagaagga gttgctttag atcattctgg ttgacctaag aaattcttat 720 atcttaaaaa gtttattaaa actaataaag aattaaggat tttattaact cttttatctt 780 ttacaagaac aatagttcct aataaaaagg aagagcttaa gatcaaacca gattattcaa 840 caattgatgc accatataaa ggaaaagtat atactattcc tgcatggttt atcaaaaatt 900 gaataagtaa acataaccta aaagcagatt taccaactta tgatgttaaa gatcattatg 960 ttagtatgaa gtcaagtcca aatggacctg ctacacattc atcattatga tcaatattat 1020 cattaagtta cccacaatta caaaatatat caaccatgtt aggtacatat agagatgaat 1080 ttttcaaatt ctatagtact gcatggaata atgattttaa taaaagtgga gatataatta 1140 atccaaaatg gactaattat actggtaaat tatcaattgt taaagatcct gaattaaaaa 1200 gaagagttat tgctatggta gattaccata gtcaatttac tcttaaacct atacatgaaa 1260 tgttacttaa taaattaagt acattgaaat gtgataggac ttttactcaa gatccaaaac 1320 attcttgata ccaaaatcac cataagttct attctctaga tcttagtgca gcaacggacc 1380 gatttccatt acaattacaa aagaagttgt tatcatatat atatgagaac aaacaatttt 1440 gtgatgcatg agcagattta ttaacctcaa gaccttatat tgattccgat ggtaatcaac 1500 atttttataa tgttggtcaa ccaatgggag cttatagttc ttgagctgcc tttaccatat 1560 cgcatcatct tgttgttgca tgagccgcac atttgtgtgg tgaatacaac tttagtcaat 1620 atattatttt aggtgatgat attgttatta aaaacgataa agtcgctaat aaatatataa 1680 ctattatgac aagattaggt gttgatatat ctattaacaa aacacatgta tcaaaagata 1740 catatgaatt tgctaaaaga tgaataaagg gaggtattga agtaagtgga attcctttaa 1800 aaggaatact taatcaatga aagaatccag gtgttgttta tacaactctg tgttcttatt 1860 ttgataagaa tccaatacaa cctatacctt tgataaatct aatgtgtgag ttatataaca 1920 aattaccatt tggtaaaaga agaaattctt ttaatcaaat gcataaaatg ttatatgatt 1980 ttcaccatgc catgagatac tctttagata aattaacata tgatgagctt agagcttact 2040 tatgtaataa agctagagag gatagtttca tggttcctgg taataatata attcttcatt 2100 ttatgaagct attactatca ggaggaatgg tgtctgaagc agagaaagta tctagacaga 2160 tattatcgga atatactaga attgaaaata aattcaaaac tagttatgac gatttaaatg 2220 ttctatctgg ataccctcta ttaaatggtt attataatca tttatcatcg atgaaagata 2280 aaatcatcaa atgagaaaat gatcctaata ctactttaat agactcggca ctttcattaa 2340 gggttgaaaa gtttgataaa attgctaatt tacaccgtaa caaaacggag tctattagta 2400 cattatcaaa actttgaaaa ctttcaatga aaggattatg acgagaaaga atcgaggatg 2460 attttgaata tatgactttt ataagtcgta taaatcaaga tacaactgat tctctgcttc 2520 cggtttatac atgagaaagt gtactagata ataatatcca gttcactcta aatcaattaa 2580 aaccgttaat ttccggtaat attgttaagg ttgaaaagaa ttcttgagag aatttggatt 2640 gaggagactt taaagtctaa ctcaaaacaa agactttcaa tcgtcttata accctaaaaa 2700 tactcttcgg agtccctctt cctgcttaaa cgcaggaaga gcgg 2744 //