ID JX401536; SV 1; linear; genomic RNA; STD; VRL; 2438 BP. XX AC JX401536; XX DT 14-JAN-2013 (Rel. 115, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Sclerotinia sclerotiorum mitovirus 2 RNA-dependent RNA polymerase gene, DE complete cds. XX KW . XX OS Sclerotinia sclerotiorum mitovirus 2 OC Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2438 RX DOI; 10.1016/j.virol.2013.03.002. RX PUBMED; 23541082. RA Khalifa M.E., Pearson M.N.; RT "Molecular characterization of three mitoviruses co-infecting a RT hypovirulent isolate of Sclerotinia sclerotiorum fungus"; RL Virology 441(1):22-30(2013). XX RN [2] RP 1-2438 RA Khalifa M.E.; RT ; RL Submitted (19-JUL-2012) to the INSDC. RL School of Biological Sciences, Auckland University, R338 Thomas building RL 110, 3A Symonds street, Auckland 1010, New Zealand XX DR MD5; af4650db7340bb6fa496fc2136de9374. XX FH Key Location/Qualifiers FH FT source 1..2438 FT /organism="Sclerotinia sclerotiorum mitovirus 2" FT /host="Sclerotinia sclerotiorum str. 16235" FT /isolate="NZ1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2005" FT /db_xref="taxon:1133728" FT 5'UTR 1..313 FT CDS 314..2350 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:L7SZQ9" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:L7SZQ9" FT /protein_id="AGC24231.1" FT /translation="MTQPLVLKLMKWVRKYYYKGTSPNLAAFTRQVVHLFFLWGKTKGW FT KWTATAFKLSRLAITRTLAGQELPRPFGISLCKKTNLPMMLPLQVRLGILRKDFLLISY FT VLTVLQLSRMILGTGVIESYSSITSPCTGSNPFTGASVAIVMKRMGISRIDEPTSFTFP FT WCSTSGPNGVSIATSFSDLMHIPQDLLECLYTLGGPEFKEKVSSLKGFVETTNGILWKL FT TKLNPDKTGSLLRRISIKKDKEYKSRPFAIVDYITQSALTPLHDRLYRVLKSIPQDCTF FT DQNKGFKDLLYGGGPYYSFDLTSATDRFPIFVQEMVLSWLVNEQYASAWVQAMVKLPFR FT TPEGTEVKFERGQPLGAKSSWAMFTISHHFVVQYCAMVLNIDNPRYKILGDDIVICDHA FT LAAKYLETMSQLGVEISPVKTHVSENLFEFAKRFGLQSVEISSFPITALISDINNYVSL FT VATLSTTVCERGNLPLFISGNTPRFWESLLKIGKEDKPRLVNSLVHSAKLLSYLLMSNK FT PYLVAQSDLLRFAEAAGFSSLTIPQVFAAYKRAVLYMKDREIDKLADMSMRFLRPVQSM FT LSQIMFLPWRGRVTVDYRKFIPIIDSIDSNKELYLDFRAEFEEANDLVTLNKVLDDHPI FT RPMPNLNGLQPNRPKLLVGQTRAALLKALVKELTMLAKGEVPE" FT 3'UTR 2351..2438 XX SQ Sequence 2438 BP; 675 A; 541 C; 554 G; 668 T; 0 other; ggggttttcg tgatcgtatc acgaatacca cggagatccc caggggtaaa tcctttccac 60 tctaaacaag tgcttcagga tccctgtctt ctctctacgt attgttcacc tacatagtag 120 gaggcagagc aaacgagcct agggctcggt cgctacggcg ctcgactacc cgacggcccc 180 acggtgtggt gtagctagat agccaactag cgtgattacc taccggggag aaacctattc 240 agttcatgtt actgaaccga aaggtcacta catggacggt gtagattaag aggaagttca 300 attggtaagt cttatgactc aaccactagt tttaaaacta atgaaatgag tccgtaagta 360 ttactacaaa ggaacttctc cgaatctagc cgcgtttacc cgacaagtag ttcacttgtt 420 cttcctgtga gggaagacca aggggtgaaa gtggaccgcg acagcgttca agctatctcg 480 gttagccatc acccggactc ttgctggcca ggagcttcca cgaccctttg ggatctcctt 540 gtgtaagaaa acgaacttac ctatgatgtt accattacag gtcaggctcg ggatcttacg 600 gaaggatttc ctcctaatat catacgttct gacagttttg caactgtcac ggatgatact 660 tgggacaggg gtcatcgaat catacagcag tatcactagt ccgtgtacag ggagtaatcc 720 ctttactggc gctagtgttg ctattgtgat gaaacgaatg gggattagtc gcatagatga 780 acccacatct ttcactttcc cttggtgctc tactagtggt ccgaatgggg tgtccattgc 840 tacctctttc tccgacctga tgcatattcc tcaagacctg ctcgagtgtt tgtacactct 900 tggaggtcct gagtttaaag agaaggtttc aagtctgaaa ggattcgtag aaaccactaa 960 tggtattcta tgaaaactga caaaattgaa tccggataaa accgggagcc ttctccgtag 1020 aatatctatc aagaaggata aagagtacaa gtctcgacca tttgcgatag tcgattatat 1080 aacccagagt gcattgactc ctttacacga tagattatat cgagtattga agtcaatccc 1140 tcaagattgt actttcgacc aaaacaaagg gtttaaggac ttactgtacg gtggcggacc 1200 gtactactcg tttgacctaa catcagctac tgaccgattt cctatattcg tacaggaaat 1260 ggtcttgagc tggttagtca acgagcaata cgcttccgct tgagtacagg caatggtgaa 1320 acttccattc agaacaccag aaggtaccga ggtgaagttt gagcgtggac aacctctagg 1380 agcaaaatcc tcttgagcga tgttcaccat ctcccatcat ttcgtagtcc agtattgtgc 1440 tatggtttta aacatagaca atcctagata caaaatttta ggagatgaca tcgtcatttg 1500 cgatcatgct ctagcggcga aatacttaga gactatgtct caactgggag ttgaaatctc 1560 tccggttaaa actcatgtaa gtgaaaactt atttgagttt gccaagagat ttggactcca 1620 atcagttgag atatcaagtt tcccgatcac ggcgttgatt tcagatataa acaactatgt 1680 ttcattagtt gctacactgt ctacaacggt ttgtgagagg ggtaacttac ctctttttat 1740 ctccggaaac actcctcggt tctgggagag cttattgaag attggcaaag aggataaacc 1800 cagactagtg aatagtctgg tccactctgc taaacttcta tcgtatctcc tgatgtccaa 1860 taaaccttac ctggtagctc agtctgacct tttacggttt gccgaggctg cagggttcag 1920 ttcattgact atccctcaag tatttgctgc ttacaaaaga gcagtgttat acatgaagga 1980 tagggagata gataagttgg cagacatgtc tatgcggttc ttacgacccg tacagtccat 2040 gctgtcacaa ataatgttcc tcccatggcg aggccgggta acggttgact atagaaagtt 2100 cataccaatt attgactcga tcgattccaa caaggaactc tatttagatt tccgagctga 2160 attcgaagaa gccaatgact tggtaacgct aaataaggta ttggatgatc atccgatcag 2220 gccaatgcct aatttgaacg gtctacagcc gaatcgccct aaactgctgg tcggtcaaac 2280 gcgagctgcc ttgttgaagg cactagtcaa ggaattgact atgctagcga aaggagaagt 2340 ccctgagtag caatactcaa ggtctcaaat accgcaacaa atagggtatt cgtacccggg 2400 gggttgcgtg ttattccact tgtgaagtgg aaaacccc 2438 //