ID JX313127; SV 1; linear; genomic RNA; STD; VRL; 3228 BP. XX AC JX313127; XX DT 03-FEB-2013 (Rel. 115, Created) DT 03-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Leishmania RNA virus 1 - Lg1398 capsid protein gene, complete cds; and DE RNA-dependent RNA polymerase gene, partial cds. XX KW . XX OS Leishmania RNA virus 1 - Lg1398 OC Viruses; Riboviria; Totiviridae; Leishmaniavirus; OC unclassified Leishmaniavirus. XX RN [1] RC Publication Status: Online-Only RP 1-3228 RX PUBMED; 23326619. RA Zangger H., Ronet C., Desponds C., Kuhlmann F.M., Robinson J., RA Hartley M.A., Prevel F., Castiglioni P., Pratlong F., Bastien P., RA Muller N., Parmentier L., Saravia N.G., Beverley S.M., Fasel N.; RT "Detection of leishmania RNA virus in leishmania parasites"; RL PLoS Negl Trop Dis 7(1):E2006-E2006(2013). XX RN [2] RP 1-3228 RA Zangger H., Desponds C., Fasel N.; RT ; RL Submitted (16-JUL-2012) to the INSDC. RL Biochemistry, University of Lausanne, Boveresses 155, Epalinges, VD 1066, RL Switzerland XX DR MD5; 4ce4c49b1d8207176b58be4c24cb3406. DR EuropePMC; PMC3542153; 23326619. DR EuropePMC; PMC6005476; 29912912. XX FH Key Location/Qualifiers FH FT source 1..3228 FT /organism="Leishmania RNA virus 1 - Lg1398" FT /host="Leishmania guyanensis 1398 (MHOM/BR/89/IM3597)" FT /mol_type="genomic RNA" FT /country="Brazil" FT /collection_date="1989" FT /db_xref="taxon:1285423" FT CDS 86..2314 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:L7Y131" FT /protein_id="AGD88193.1" FT /translation="MSDIPNSDKISCGRKPMFCEIIKLANRRRLIFDTSSERVYDARVN FT YCSTADATVQADCHIYWRLKLRRADAVFEEFTGQGYSLDTAAYPQQYADIIRGYYSKHV FT SSALAANTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKYKNKEVITLSSADSLS FT FLPHSALYLPSPLRASDPEIFNMLYLLGCACDASIAMDNISNTSGAAKYSMPHYNPLQL FT SHALHVTIFYMLGLMDSCGCGEDAVLALTAGLHSVTTVIAHSDEGGITRDALRELSYTQ FT PYGTMPVPITGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP FT TTITTKVASVDGRNSDIAAQMMHSATRFCDIYIENLCTFWGVVANPEGNASQALLHAFN FT IVACGAEPNRHLDLNVMAPWYWIESSALFSDYSQFRSPISSAGYGPQCVYGARLVLAAT FT NTLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRAGDGLANVDFRLRPFNEWLLEGQPS FT RRSCNAAGHGTPTAACCHKSPNRDSLDEYIWGSTSCDLFHPAELTSYTAVCVRFRNYLS FT SADGEVHLLNTPTREVIEGNITTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLAQART FT FGSLTIGDDIIRGFDKVEKVVKMHKSNNRLGQMPLIDVTGLCLPMVETSTVRASTTTRI FT DPNKLAAAVARTELPIAPRSTSSLIPSSDAVPEAEPQAGEPGNGSGCA" FT CDS <2241..>3228 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="translation probably initiates at the 5' end of FT major capsid protein coding sequence and results in the FT expression of a fusion protein via a translational FT frameshift" FT /db_xref="GOA:L7XZM4" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:L7XZM4" FT /protein_id="AGD88194.1" FT /translation="SLLQTQCPKRNHKLVNRAMVVVALKYFEDVGYVVSGILDMSRLTS FT TSIKGQHKNNSDYFYKYNLLFSQVPAIVLNQLKCCVKAQVDDAIKTTLQATGKVKISKP FT VEKMLTFSVINRFLGYPDSDGSVTRYSEEQSSPIAAKLLLTFLSSVLVAMVPASVDPHI FT SGNKIPRHYYTLKAHVGAQKKVNLTAIEVIRGCQHECIAVYCEFVRYSAYFADLYDDQV FT ASILLYAVAAHNIQGFGARFSILWALSCVKVSALADDINIYVKHRGMSGLLPQLVEMRC FT LLGRGVKEIDVEAEARRRLDASNLDMQGFKEEELRAAVKQVYAEEVRR" XX SQ Sequence 3228 BP; 877 A; 675 C; 773 G; 903 T; 0 other; tcctacaacg acagcaacta tatctaccat ctacgaccta agaattccac gtgaacatac 60 cttgagtata caattcttgg ccaagatgtc tgatataccg aactctgata agatctcgtg 120 cggacggaaa ccaatgtttt gtgagattat aaaactcgca aacagaagga gattgatctt 180 tgacacatcg agtgagcgtg tgtatgatgc ccgtgtgaac tactgctcca ctgctgatgc 240 aacagttcaa gcagattgcc atatatactg gcgacttaag ctgcgccgtg ctgatgctgt 300 ctttgaggaa ttcacaggac aggggtattc acttgatact gctgcatatc ctcaacaata 360 tgctgatatt attcgaggct actacagcaa acatgtatca agtgctctcg ctgcaaacac 420 tcaacacttt gtgaacgttt tggcaatgtt acgtcatgct ggtgcttgta ttgcacatta 480 ttgcatgacc gggaaaattg attttgatat tttaagtaaa aagaaataca aaaacaagga 540 ggtcatcacc ttgagcagcg ctgacagctt aagttttttg cctcactcgg ctttatatct 600 gccttcccct ttacgtgcaa gcgaccctga gatatttaac atgttgtact tacttggttg 660 cgcttgtgat gcgagtattg ctatggacaa tatctccaac actagcggtg ctgcaaagta 720 ttcaatgcca cattacaacc cattacagtt gtcccatgcg ttgcatgtca caatcttcta 780 tatgttgggt ttgatggaca gttgtgggtg cggtgaggat gcagttttgg ctctaactgc 840 tgggttacac tcagtcacaa cggtcattgc gcacagtgat gaaggtggca ttactcgcga 900 tgcattgagg gaactgtcgt acacacagcc gtatggcacg atgccagtgc ctataactgg 960 ctattttcag cacattaatg tgctatttac aacccaaccg gcttgggacc aatttgctgg 1020 gatatgggat tacgtgatcc tcgctactgc agccctggtt catttatctg atccagggat 1080 gactgtaaac gatgtaacat accccacaac cataactaca aaggtagcgt cggttgatgg 1140 gagaaatagc gatatcgcag cccaaatgat gcacagtgct acgcggtttt gtgatatcta 1200 catcgagaac ttgtgtactt tttggggcgt tgttgcaaac cccgagggga atgcaagcca 1260 ggctctacta catgctttta acatcgtcgc gtgtggtgct gaacctaaca gacatctcga 1320 cttgaatgtg atggcaccgt ggtattggat tgaaagttct gctttattca gtgactactc 1380 acagttccgt tcaccgatat cttcagcagg ctatggtcca caatgcgtgt atggtgcacg 1440 actagtactg gcggcgacga acacgctgga gtttacaggt gaagcgggtg actactcggc 1500 ctaccgattt gagtggacta ctatgcggca taacccgctc tttaacatac tcaataaacg 1560 ggctggtgat ggcctcgcaa atgttgattt taggctgcga ccattcaatg agtggctact 1620 tgaggggcag ccgagtcgcc gaagttgcaa tgctgcaggc cacgggacac caacagcagc 1680 ctgttgtcat aaatccccca atcgtgattc tctggatgaa tatatatggg gtagtacatc 1740 atgtgattta ttccacccgg ctgaactaac ttcatatact gctgtctgtg ttagattcag 1800 aaactacctt tcgagtgcgg acggtgaagt ccacctatta aacacgccga caagggaagt 1860 tattgaaggc aacattacaa ctaggtgtga cggtatacgt tgtcttgaca gtaataagcg 1920 catacaacat gttccagagg ttgcgcgccg ctattgcatg atggcgaggt atctggcgca 1980 agcacgtact ttcggctcgc ttacgatagg cgatgatata attcgtggtt ttgacaaagt 2040 tgaaaaagtg gtcaaaatgc ataagagtaa taatagatta ggtcaaatgc ccttgattga 2100 cgtaactggt ctttgtttgc ctatggtcga aacgagtact gttcgtgctt ccacgactac 2160 tcgtatagac ccaaacaaac ttgctgcagc tgtggcccgc actgaattac cgatagcgcc 2220 acgttctacg tcctccctga tcccttcttc agacgcagtg cccgaagcgg aaccacaagc 2280 tggtgaaccg ggcaatggta gtggttgcgc ttaagtattt tgaggatgta gggtatgtgg 2340 ttagcgggat ccttgacatg tcacggctga caagtacgtc aattaaaggg caacataaga 2400 ataattcaga ttacttttat aaatataatc tattgttttc ccaagtgcca gcgatcgttc 2460 taaatcaact taagtgttgt gtaaaggctc aagttgatga tgccatcaaa acaactcttc 2520 aggcaactgg taaggttaag ataagtaagc cagttgaaaa aatgcttaca ttctcagtta 2580 taaacagatt ccttggttac cctgattctg atggatctgt tactcggtat tcggaggaac 2640 aatcgagtcc tattgctgca aaactacttt taacgttcct ttcttctgtt ttggttgcaa 2700 tggtaccagc aagcgttgat ccacatataa gtgggaataa gatcccacgc cattactata 2760 ctctcaaagc acatgtaggt gctcaaaaga aagtgaacct gacagccatt gaggtgataa 2820 gaggttgtca acatgaatgt attgctgttt attgtgagtt tgtacgatat agtgcttatt 2880 ttgcggattt gtatgatgat caggttgcca gtatcctact atatgctgtt gccgcacata 2940 atatccaggg attcggtgca cgcttcagca ttctgtgggc actgtcatgt gtaaaagtaa 3000 gcgctttggc tgatgatata aatatatatg taaaacacag aggaatgtca gggttgttgc 3060 cacaattggt tgaaatgagg tgtttgctgg gaaggggagt aaaagagata gacgttgaag 3120 ctgaggcaag gcgcagatta gatgcgagca atcttgatat gcaggggttc aaagaagagg 3180 aactacgtgc tgcagttaag caggtctatg cagaagaggt acgcagat 3228 //