ID JX313126; SV 1; linear; genomic RNA; STD; VRL; 2480 BP. XX AC JX313126; XX DT 03-FEB-2013 (Rel. 115, Created) DT 03-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Leishmania RNA virus 1 - LgM5313 capsid protein gene, complete cds. XX KW . XX OS Leishmania RNA virus 1 - LgM5313 OC Viruses; Riboviria; Totiviridae; Leishmaniavirus; OC unclassified Leishmaniavirus. XX RN [1] RC Publication Status: Online-Only RP 1-2480 RX PUBMED; 23326619. RA Zangger H., Ronet C., Desponds C., Kuhlmann F.M., Robinson J., RA Hartley M.A., Prevel F., Castiglioni P., Pratlong F., Bastien P., RA Muller N., Parmentier L., Saravia N.G., Beverley S.M., Fasel N.; RT "Detection of leishmania RNA virus in leishmania parasites"; RL PLoS Negl Trop Dis 7(1):E2006-E2006(2013). XX RN [2] RP 1-2480 RA Zangger H., Desponds C., Fasel N.; RT ; RL Submitted (16-JUL-2012) to the INSDC. RL Biochemistry, University of Lausanne, Boveresses 155, Epalinges, VD 1066, RL Switzerland XX DR MD5; 9b8d125a47e131afaa50424351504f16. DR EuropePMC; PMC3542153; 23326619. DR EuropePMC; PMC5242429; 28099431. DR EuropePMC; PMC6005476; 29912912. XX FH Key Location/Qualifiers FH FT source 1..2480 FT /organism="Leishmania RNA virus 1 - LgM5313" FT /host="Leishmania guyanensis M5313 (WHI/BR/78/M5313)" FT /mol_type="genomic RNA" FT /country="Brazil" FT /collection_date="1978" FT /db_xref="taxon:1285422" FT CDS 165..2393 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:L7XUU7" FT /protein_id="AGD88192.1" FT /translation="MADIPNSDKIACGRKPMFCEIIKLANRKRLIFNTTDERVYDARLN FT YCSTADSTVQADCHIYWRLKLRRTDAVFEEYTGQGYSLDTAAYPQQYTDIIRGYYSKHV FT SSSLAANTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKHKNKEVVTLSNADSLS FT FLPHSALYLPSPLRASDPEIFNMLYLLGCACDASIAMDNISNTSGAAKYSMPHYNPLQL FT SHALHVTIFYMLSLMDSCGYGDDAVLALTSGLHSVTTVIAHSDEGGITRDALRELSYTQ FT PYGTMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP FT TTLTTKVATVDGRNSDLAAQMMHSATRFCDIFVENLSTFWGVVANPDGNASQALLHAFN FT IVACAVEPNRHLEMNVMAPWYWVESSALFCDYTPFRSPISSAGYGPQCVYGARLVLAAT FT NSLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQPS FT RRSCNSAGHGTPTATCSHKTPNHDTLDEYIWGSTSCDLFHPAELTSYTAVCVRFRNYLS FT GADGDVRILNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLAQART FT FGALTIGDDIIRGFDKVEKIVKMHKSNNRLDQMPLIDVTGLCQPMIETSTVRASTTTRI FT DPNKLAAATARVELPLAPRCTSSLIPSSDTVPEPEPQVGEPGDNGGCA" XX SQ Sequence 2480 BP; 657 A; 557 C; 584 G; 682 T; 0 other; atccaatatg ctgactacgg tcggtgtgga ggatccgaaa cgtaagcaag tttcttgtta 60 ctattgatca acagctacat cctacaacga cagctatcat accagccatc tttaacccaa 120 gaattccacg tgaacatacc ttgagtatac aattcttgag caaaatggct gatataccaa 180 actctgataa gattgcttgc ggtcgcaagc ctatgttttg cgagattata aaacttgcaa 240 acaggaagag gttgatcttt aatacaaccg acgagcgtgt gtatgatgcg cggttgaact 300 attgttcaac tgcagattct acagtgcaag cagattgcca catctactgg cgactcaaac 360 tgcgacgcac tgatgcagtt tttgaggaat acaccggtca agggtattca cttgacactg 420 ctgcttaccc acaacagtac actgatatta tcagagggta ttacagtaag cacgtatcaa 480 gctctctcgc tgcaaacact caacattttg tgaacgtttt ggctatgcta cgccatgctg 540 gtgcatgtat tgcacattat tgcatgactg ggaaaattga ttttgacatt ttgagtaaga 600 aaaaacataa aaataaagag gtggtgacct tgagcaatgc tgacagtttg agttttttgc 660 ctcactcggc cttatatctg ccttctcctt tacgtgccag cgatcctgag atctttaata 720 tgttatattt gcttgggtgc gcttgtgatg ctagtattgc tatggataac atctcaaata 780 caagcggagc cgctaagtac tcaatgcccc attataaccc gctgcagctg tctcatgctc 840 tgcatgtgac gatattttac atgttaagct tgatggacag ctgcgggtat ggtgatgacg 900 ccgtcctggc gctaacttct ggcttacatt ccgtgaccac agttattgca cacagtgatg 960 aaggtggtat tacacgtgat gccctacggg aactgtcata cacgcaacct tatggtacta 1020 tgcctgttcc gattgccggt tacttccagc acattaacgt gctgtttacc acacagcccg 1080 cttgggatca atttgctggg atttgggatt atgttatctt ggcgactgct gctctggtac 1140 atctatctga tcctggaatg actgtcaacg atgttactta ccctacgact ctgacaacta 1200 aagtggcaac ggttgatggg cgtaacagtg acttggctgc tcagatgatg cacagcgcaa 1260 ctcgattctg tgatatattc gtggagaatt taagcacatt ctggggcgtt gttgctaacc 1320 ctgacgggaa cgcaagccag gctctactcc acgctttcaa catcgtagct tgtgctgtag 1380 agccgaacag acatctggag atgaatgtga tggccccgtg gtattgggta gaaagttctg 1440 ctttgttctg tgattacacg ccatttcgat caccgatatc atccgcaggc tatggccctc 1500 aatgtgtcta tggtgcaagg ctggtacttg ctgctactaa ctcgctagag tttacaggtg 1560 aagcaggtga ttattctgca taccgttttg agtggacaac aatgcgccac aacccattat 1620 ttaacatcct taacaaacgt gttggtgatg gtcttgccaa tgttgatttc aggttacgcc 1680 ccttcaatga atggttgttg gagggtcaac caagtcgtcg gagttgtaac tcagctggcc 1740 acggcacgcc cacggccaca tgttctcaca aaaccccaaa ccacgacacg ctagatgagt 1800 acatctgggg cagtacgtca tgtgacctgt ttcacccggc ggagttgact tcttacacag 1860 ccgtgtgcgt cagattccgc aactacctat cgggtgctga cggtgatgtt agaatactga 1920 atacgccgac tagagaagta atcgagggaa acgtggtcac aagatgtgac gggataagat 1980 gtctggacag taataaacga atacagcatg tccctgaagt ggcaaggcgc tactgcatga 2040 tggcgcggta cctcgcacaa gcccgtactt ttggagcact aactattggg gatgatatta 2100 tacgtggttt tgacaaggtt gaaaaaatcg tcaaaatgca taagagtaat aatagattgg 2160 atcaaatgcc tttaattgat gttactgggt tatgtcagcc aatgattgaa acaagtacag 2220 tgcgcgcctc aacaacgacg cgtattgatc ctaacaaact tgcggctgct acggcccggg 2280 ttgagttacc actagcgcca cgttgtacat cttctttaat cccatcatct gatacagtac 2340 ccgaaccaga gcctcaagtt ggcgaaccgg gtgacaacgg aggctgcgct tgattgtttt 2400 gaaaatgtgc gacgtatgat tagtggtttc ttgaatctgt cgtggctgac agtaacatct 2460 aaagaaaggc aacataaaag 2480 //