ID JX304792; SV 1; linear; genomic RNA; STD; VRL; 7549 BP. XX AC JX304792; XX DT 18-SEP-2012 (Rel. 114, Created) DT 01-MAR-2017 (Rel. 132, Last updated, Version 3) XX DE Aeonium ringspot virus segment RNA1, complete sequence. XX KW . XX OS Aeonium ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7549 RX DOI; 10.1016/j.virusres.2013.08.012. RX PUBMED; 24012516. RA Sorrentino R., De Stradis A., Russo M., Alioto D., Rubino L.; RT "Characterization of a putative novel nepovirus from Aeonium sp"; RL Virus Res. 177(2):217-221(2013). XX RN [2] RP 1-7549 RA Sorrentino R., Alioto D., Rubino L.; RT "Sequence analysis of Tobacco ringspot virus isolated from Aeonium"; RL Unpublished. XX RN [3] RP 1-7549 RA Sorrentino R., Alioto D., Rubino L.; RT ; RL Submitted (03-JUL-2012) to the INSDC. RL Dipartimento di Arboricoltura, Botanica e Patologia Vegetale - ARBOPAVE, RL Universita di Napoli Federico II, Via Universita, 100, Portici, NA 80055, RL Italy XX DR MD5; 63a30c5b60b252a436c82654610f10b3. XX FH Key Location/Qualifiers FH FT source 1..7549 FT /organism="Aeonium ringspot virus" FT /segment="RNA1" FT /host="Aeonium sp." FT /strain="Aeonium" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="Mar-2011" FT /db_xref="taxon:1962503" FT CDS 104..7048 FT /codon_start=1 FT /product="polyprotein P1" FT /db_xref="GOA:J9U744" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:J9U744" FT /protein_id="AFR67086.1" FT /translation="MGFHCPVLNCSFHNVDWSRKALKEEGLTFSMRCPGACCGALLQRR FT EQQDVKQVDSAPASRKSVDSATPKCLCWLASVGVSRCPKHSPVASATKSKSPPPCVEKS FT KSAPRAAVSASPLKKQNCDIVVAIGPPVDLELVYPALCGNGTATPKKVEKKSLNEVVLE FT KRAEYQARTVVPPPGPIRVVKTAAAPVKAERTKFPRGAVVYNGINFFDAKGRVVLSAGA FT LKILRGIKRLRQQQARSARRLAACRKARLARFEVMVPGLLKKASEAQFGGFRYVDLNAP FT KSANLACKMPKKKMKKTTKKVAGSASPVEEEINWDDFIIPDSERTASPMKEEKKSRQPL FT VPNCLGFGWWRPASGSLWSSVLHCQRVCRGTFLAASAEANLVLAGTDDELLSVWARISA FT SVVDLSAHYPIPTLLENYSALSECSLEELKGVAVQLDSEYQELGPPTQYTCGLSSWARG FT AGKLVADFISPSFERIAGIANGVLDKAYTLSRAVVDQIFAKMKSLFYDCFGHLMGHLNV FT LLSTVESFWSRATTWIMNILEKTHDAIKVLRDASVWSLLLILVGGMILLSERFLCSLGI FT IGKPGTILGIFLATFLGIFGYTFFKKDDTLVSDLLFVFKTAITGLFRTKPGPPGSPIII FT DGDVVIPEPHHEMSTCSFLGGLDIAIAAIGNVGASILSFKMGTLQYAAKIATCLDQLRK FT GKDVLKEMTCWLIETLGQLWNKITGREATFFDEVSAIIAVDIREWLEESQNLCLAAQTF FT SIGDKIVLEQCERLIADGHKLLRGMGDTDRKLSSSFLSTIQRKVTDLEKIHTQSVRAGY FT FEGRRMEPFWVYIHGPSHCGKSLLMEPMSRELLRAGGYSEASIYTKNSCDKYWSRYRRQ FT ACVQIDDLSAGKTDPSLESQLINLVASKEVPLDMAEVEDKGILFDSAILVTSSNTAHVP FT TNANVNHMEAYKNRQNIVIQCRRKPEYSTLGVELEGTFQAFDPRNPQASIECMIQHRET FT HAPLTGWISAGAAMAEAVNQFRLHREKEMILQSNHLSSFRPAHPIYTECATFLSMYARD FT ASFVPPVDLGCKWQVPAGFSTIAAVDGRVFGFSQLGVCSEIKTGLEFSEEMEQYTLEKF FT APNITRTLASQSRFKLVGAFLKGMVRDEDNVASLKSLGPKSTATQREFYETLGLAERVY FT LRAIQKRINKIRDDPGFEVDKLHAKLLSIVAQSYEFVKEKGPKIFPLLMGFIVVVFACY FT GFVMPLLSFASGGSAVGGMVAMEQMTAASVISSGSSPVHHRSRAPPIQPRYARHRIAGS FT TPDEAFQYEELMVVLYVDSTTAPVVNAIRGPGRSLFMTEHQAMAIPNNSTVVAHFAGRE FT CVEIHWEHDTARKGKREETEIIQYRCPSIPELPSKFRKYFEYDLERDLPGPFTIDASVY FT RMKSPGSVELELVNWTNHDAELITKALVISDPFGEDRYRREYPRYIRYRRQAQLHDCGA FT ICVTKINGHHRVVGLLISTDKYNTGVGLLPSALHMTTCSLSYVPEEWEDAPRGLKKRGW FT KHASELPHMPSKTQYVKVPEEFEIPYENPKIPSVLVADDPRTIGTPVEGQDPVLVAMEK FT FYEPMLDFDDTFVAGSTERDLFEQVCDDIVQTWYDAGACFEDVDDDVVINGNDDFDKLI FT MDTSEGYPYVLERSHGDKGKTRYFEGGPGAYTLKPGTTVFHDYHALQQEVSVEGGIPEM FT VCIECPKDELLPRRKVLEKLGTRNFEILELPKNMLFRKKYLSWALFLTEMRWCLPCQVG FT IVVQGREWGLLMDRIASKNSVAYNCDYSKFDGLMSCQVLNAIGKMVNRCYSNENPNFRG FT RGGEVPGSPPQLARHNLLMSIFGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIR FT YVYKTVVPSPQYDRFESFVSLVTYGDDNLISVDASMASIFTGEVIKKTLARKGVTITDG FT SDKLSPTLEAKPIAQLDFLKRSFLVEGGQVFPALDLSCIFSSLKHVRAEGADVIPILHQ FT NVQNALQELYYRRDKEQFDYVRTFYLERIPVWGTGKNRLIDWSYAHRHWISRYTGDPSA FT NPAGVVDILVDPRYKSFLLPAGPADWCMPIADRFFVCGPKFYPQGHSFTVCFNRLAAGE FT NGVQIKPVHAATQGAMPTSKFVDSFRSVKRREELNLVLSAYDTGANIYFKGCAPYNDIW FT ACAIAFCSAFGIAQKEILLALHDNSKPIGASSLRSYFNHKIVGDGCARRLEIYSTKPRA FT DIVKRVLPQVQCVHIDYEPGFSSKPTTHLRRCTDSGADGGKAMYIVQGLGKTAAKLVCS FT DLCDGHLASCTNSFEKMVIDLFKQSCF" XX SQ Sequence 7549 BP; 1853 A; 1594 C; 1866 G; 2236 T; 0 other; ttgaaaattc tctcacacgg ttcgccttta ctcaactctc actttctctc tttaattgtt 60 ttgagatttt gataaatttt gttttgagtg atccactgtg actatgggct ttcactgccc 120 agtcctgaat tgctccttcc acaatgtgga ttggagccgt aaggccctca aagaagaggg 180 ccttactttt agcatgcgtt gtcctggcgc atgctgcggt gctcttttgc agcgccgtga 240 gcaacaggat gtgaagcagg tggatagcgc ccctgcgtcc cgaaagagcg tggatagcgc 300 cacgccaaaa tgcttgtgct ggcttgccag cgtgggtgtc tctcgatgcc ccaagcattc 360 tcccgtggct tcggccacca aatccaaatc ccctccacct tgtgtggaga aatccaaatc 420 tgcaccacgt gcagcagttt ctgcttctcc tctcaagaag cagaactgcg acattgtggt 480 tgcaattggt ccccctgtgg accttgagct ggtctatcca gctctctgtg gaaatgggac 540 tgccaccccc aaaaaggtgg aaaagaagag cctcaatgag gttgttctgg aaaaacgggc 600 tgagtatcaa gcccgtactg ttgtcccacc acctggtcct attagggtgg tgaagaccgc 660 tgctgccccg gttaaggcag aacgcaccaa gttcccacgt ggagctgtgg tgtataatgg 720 catcaatttc tttgatgcca agggccgtgt ggtcctgagt gctggtgcac tcaaaatttt 780 gcgcggaatc aagagactcc ggcaacaaca ggcgcgatct gcgcgccgcc ttgcggcatg 840 ccgcaaggct cgcttggccc gttttgaggt catggttcct ggccttctta agaaggcatc 900 tgaagcccaa tttgggggct tcagatatgt tgatcttaat gcgccgaaga gcgcaaattt 960 ggcatgcaag atgccaaaaa agaagatgaa gaagaccacc aagaaggtgg ccgggtctgc 1020 ctcccccgtt gaggaggaaa tcaactggga tgatttcatc attccagatt ctgagaggac 1080 tgcctccccg atgaaggagg aaaagaaatc caggcagccc ctggtgccca actgcttggg 1140 ctttggctgg tggcgaccag cctctggttc tctttggagc tctgtgctcc actgccagcg 1200 tgtctgtaga ggcacatttc ttgctgcctc tgctgaggct aatttggtgc tggcaggcac 1260 tgatgacgag ctcctttctg tgtgggctcg tatttcagca agtgtggtgg atttatctgc 1320 ccactatcct attcccacct tgctggaaaa ttactctgca ctttctgagt gctcccttga 1380 agaattaaag ggagttgctg tgcagttaga ctcagagtac caggaacttg gaccacctac 1440 tcaatatact tgtggtctat cttcttgggc tcgtggagcc ggaaagcttg ttgctgattt 1500 tatcagccca agttttgaac ggatagcagg catcgcaaac ggtgtacttg acaaggccta 1560 tacgctgtcc agagcagttg tggatcaaat ctttgccaag atgaaatccc tcttctatga 1620 ctgctttggg catttgatgg gtcaccttaa tgtcctgctt tctactgttg aatccttttg 1680 gtctcgtgct accacttgga ttatgaacat tttagagaaa acgcacgatg ccatcaaagt 1740 cctccgtgat gcttcagttt ggagtttact ccttattttg gttggaggta tgatcttgtt 1800 gtcagagaga tttttatgtt ctcttggtat tattggaaag cctggtacaa tactgggcat 1860 ctttttggca acttttcttg gcatttttgg atacacgttt tttaagaagg atgacactct 1920 tgtgtctgac ttgctttttg tattcaaaac tgctattact ggtctgttcc ggacgaagcc 1980 tggtcctcca ggatcaccca tcataattga tggcgatgtg gtgataccgg aacctcatca 2040 tgagatgtcc acctgtagtt ttctgggcgg gttggacata gctatcgcag ctattggcaa 2100 tgttggtgct tccattcttt catttaaaat gggaacattg caatatgctg ctaagattgc 2160 cacatgtctt gatcaactac gtaagggtaa agatgtcctt aaggagatga catgctggtt 2220 aattgaaact cttggccaac tatggaataa gattacaggc cgagaagcca ctttctttga 2280 tgaagtgtct gccatcattg cggtagatat tagagagtgg cttgaagaat cccagaattt 2340 gtgcctcgct gcgcaaactt tttccattgg tgataagatc gtgctcgaac aatgcgaacg 2400 tcttattgct gatggccata aactgttgcg gggcatgggt gatactgatc ggaaactttc 2460 cagttctttc ctatctacga tccaaaggaa agttaccgat cttgaaaaga ttcatactca 2520 gtctgtccgt gctgggtatt ttgaaggaag aaggatggaa cccttctggg tttatattca 2580 cggaccctcc cattgtggaa aatcgctcct tatggagcca atgtcgcgcg agcttctgcg 2640 cgctgggggg tattctgaag cgtcgatcta taccaagaat tcttgtgata aatattggtc 2700 acggtataga cggcaagcat gtgtacaaat tgatgatttg tctgctggca aaactgatcc 2760 atctctagaa agtcagctca tcaatttagt tgcctccaag gaagttccat tggatatggc 2820 agaggttgaa gataagggta ttttgtttga tagtgccatt ttggtcacgt catctaatac 2880 tgctcatgtc ccgaccaatg ccaatgttaa ccacatggag gcatacaaaa atcgccagaa 2940 cattgtaata caatgtagga ggaagcctga gtactccact cttggcgttg agcttgaggg 3000 aacattccaa gcgtttgatc ccagaaaccc tcaagcttca atagaatgca tgatccagca 3060 tagggaaaca catgcccctt tgactggctg gatctcagcg ggcgctgcta tggctgaagc 3120 agtgaaccaa tttcgtctgc accgggagaa ggagatgata cttcaatcaa atcatctatc 3180 ttccttccgt cctgcccacc ctatttacac cgagtgtgcc acttttttgt caatgtacgc 3240 gcgagatgca agtttcgtgc cacctgtgga ccttggttgt aaatggcaag tgccagctgg 3300 cttttccact attgctgcgg ttgatggaag agtcttcggt ttctcgcagt tgggtgtatg 3360 ttccgaaatc aagactggtc ttgagttttc agaagaaatg gaacagtaca cccttgaaaa 3420 atttgccccc aacattactc gaacgttggc ttctcagagt cgatttaaat tggttggggc 3480 ttttttgaaa ggaatggtcc gggatgaaga taatgttgca tcccttaaat cacttggacc 3540 aaagagtacc gccacccaaa gggaattcta tgaaactttg ggtttggcag agagagtcta 3600 cctccgggcc atacagaaaa ggattaataa aatccgtgat gatcctggat ttgaggtgga 3660 taaattacat gcaaaactct tgagcattgt tgcccagtcc tatgagtttg tgaaagagaa 3720 gggaccaaaa attttcccct tgctcatggg tttcattgtt gtagtttttg catgttatgg 3780 atttgtcatg cccctcctgt cttttgcatc aggaggttct gctgttgggg gtatggttgc 3840 tatggaacag atgactgctg ccagtgtcat atcttctgga tcatctccag tgcaccatag 3900 atcaagagct cccccaatcc aacctagata tgctcgtcat aggattgcag gatccacacc 3960 agatgaagcc ttccagtatg aagagctgat ggttgtgctg tatgttgatt caacaacagc 4020 acctgtggtg aatgcaattc gtggtcctgg tcgctcacta tttatgacag agcaccaggc 4080 aatggctatt cctaacaact ctactgtcgt tgctcatttt gcaggtagag aatgtgtgga 4140 gatccattgg gagcatgata ctgcaaggaa gggtaagcgg gaagagactg aaattatcca 4200 ataccgctgt ccttccattc ctgaactgcc ctcgaagttc aggaaatatt ttgaatatga 4260 tcttgagagg gacttgcctg ggccttttac aattgatgct agtgtatata gaatgaagag 4320 cccagggagt gttgaacttg agttggtcaa ttggaccaac catgatgctg agcttatcac 4380 caaggcgctt gttatttcag atccttttgg tgaagaccgg taccggcgtg agtatcctag 4440 atatattcgt tatcgccggc aagcccagct acatgactgt ggggccatct gtgtgactaa 4500 aataaatggt caccaccgtg ttgtcgggct tttaatttct accgacaaat ataacacggg 4560 tgttggtctt cttcctagtg cgctacacat gacgacatgc tcactgagtt atgtccctga 4620 ggaatgggaa gatgcacccc gcggtcttaa gaaaagagga tggaagcatg caagtgaact 4680 ccctcacatg ccttccaaaa cacagtatgt caaagtgcct gaggaatttg aaattccata 4740 tgaaaatcca aagattccca gtgtgcttgt ggcagatgat ccgcgtacaa ttggtacgcc 4800 agttgaggga caagatccag tgttggttgc aatggaaaaa ttttatgaac caatgttgga 4860 ttttgatgat acttttgtag ccgggagtac agaacgagac ctcttcgagc aagtttgtga 4920 cgatatagta caaacatggt atgatgccgg tgcttgtttc gaagatgttg atgatgatgt 4980 ggtcattaat ggaaatgatg actttgataa attgataatg gacacatcag aaggctaccc 5040 ctatgtgctt gagcggtcgc atggggacaa aggtaaaacc cgctattttg aaggtggacc 5100 tggggcttac actctgaaac ccggcaccac tgtcttccat gattatcatg ctttacaaca 5160 agaagtcagt gtggaaggag gtattcctga aatggtctgc atcgagtgtc ctaaggatga 5220 attgctgcca cgccgtaagg tgttggaaaa attaggcact cgtaattttg agatattgga 5280 attgcccaag aatatgcttt ttagaaagaa atacttgtct tgggctttat tcttaactga 5340 aatgcgctgg tgtctcccct gccaggttgg tatcgttgtt caggggagag aatggggttt 5400 actcatggac cgaattgctt caaagaatag tgtagcttac aactgtgact actctaagtt 5460 tgatggtctt atgagttgcc aggttcttaa tgccattggt aaaatggtta ataggtgtta 5520 ctccaatgag aatcccaatt ttagagggag aggaggagaa gttcctggta gtccacccca 5580 gttggctagg cacaatttgt taatgtctat ctttggtaga aaatgcctag ccagatctca 5640 agtttttgag gtgagagggg gtataccatc tgggtgtgcc ctcacagtct tattgaactc 5700 cgtttttaat gaaatattaa ttcgatatgt ttataagact gtagttccat ccccccaata 5760 tgatcggttt gagagctttg tctctctagt tacatatggg gatgacaatc tcatctcagt 5820 ggacgcttct atggcctcaa tttttactgg agaggtcata aagaagacac tagcaaggaa 5880 gggcgttacc attactgatg gtagtgataa attgtctcca acgcttgaag cgaagccgat 5940 agctcagttg gattttttaa aacgctcatt tcttgtagaa ggcggtcagg tgttcccagc 6000 acttgacctg agttgcattt tttcctcgct caaacatgtt agagctgagg gcgccgatgt 6060 cataccaatc ctgcatcaaa atgtacagaa tgctttgcag gagctttatt atcggcgtga 6120 taaagaacag tttgattacg ttcgtacttt ttatctcgaa cgtatacctg tgtggggtac 6180 agggaaaaac agactgattg actggagtta tgcccaccgg cattggatca gtaggtacac 6240 aggagatcca agtgcaaatc ctgccggtgt ggtggacatt ctagttgacc cgcggtacaa 6300 atccttcctc cttccagcgg gtccagctga ttggtgtatg ccaatagctg ataggttttt 6360 tgtttgtggc ccaaaatttt atccacaagg ccactctttt actgtatgtt tcaacaggct 6420 tgctgctggt gaaaatggtg tccagattaa gcctgtgcat gcagcaacac aaggggccat 6480 gcctacatcc aaatttgttg atagcttccg tagtgtcaaa cggagggaag aacttaattt 6540 agttctttca gcctatgata ctggggctaa tatatatttt aagggatgtg ctccttataa 6600 tgatatctgg gcttgtgcta ttgctttttg ctccgctttt ggaatagccc agaaggaaat 6660 tcttttagct ctgcatgata actcgaaacc cattggtgcg agttccctgc ggagctactt 6720 taatcataag attgtcggtg atgggtgtgc gcgtagattg gagatatatt ctacaaagcc 6780 cagagccgac attgttaaaa gagttttgcc tcaggttcaa tgtgtgcata tagattatga 6840 acctggtttc tcatctaaac caactacgca cttgcgcaga tgcacagatt ctggtgcaga 6900 tgggggcaaa gctatgtata tagttcaagg gcttggtaag actgctgcta agctcgtttg 6960 ttctgactta tgtgacggcc atcttgcttc atgtacaaat tcttttgaaa agatggtcat 7020 tgatttattt aagcagtcat gtttttaact tgctgtcatt gatttgatgg cttttgtttg 7080 ttgagtcttc taaccaggag cagcccttct gatctttgtt gattggaaac cttgttgtac 7140 ttggtggtta gttagacgcg tcaataaccg ggatcttaat tgattccgtc ttagtttcct 7200 ggtcctactg gactggtcct gctcttaggt gagtggggaa gctgtataaa ctcagctttt 7260 cgggggtgag agcccgagaa tgtctgtctg tcagctgctt gtgtaaatga gctttctccg 7320 aggatagctc tcctcggcac aagtgaaaac gactaccgtg gcacgttagt agccagacgg 7380 tcggggtaaa atccctagtt aacaaaatgt gttaggacgt tgtttctggc agctttgttg 7440 gtcctattga gttttctaaa gctgctttgg tattttgtgt gtttgagccc actgttcata 7500 tttggtttgg ggccttgtat gtttcttagt gtcgtgtttg tcccacaca 7549 //