ID JX286709; SV 1; linear; genomic RNA; STD; VRL; 4428 BP. XX AC JX286709; XX DT 31-OCT-2012 (Rel. 114, Created) DT 28-NOV-2012 (Rel. 114, Last updated, Version 2) XX DE Maize chlorotic mottle virus 32 kDa protein, P111, 50 kDa protein, P31 DE protein, P7 protein, and coat protein genes, complete cds. XX KW . XX OS Maize chlorotic mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Machlomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4428 RA Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N., RA Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P., RA Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Mumford R., RA Boonham N.; RT "Use of next generation sequencing for the identification and RT characterisation of Maize chlorotic mottle virus and Sugarcane mosaic virus RT causing maize lethal necrosis in Kenya"; RL Plant Pathol. 0:0(2012). XX RN [2] RP 1-4428 RA Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N., RA Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P., RA Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Boonham N., RA Mumford R.; RT ; RL Submitted (06-JUL-2012) to the INSDC. RL Plant Protection, Food and Environment Research Agency, Sand Hutton, York RL YO411LZ, UK XX DR MD5; 76c53ea5348ef108dc1237ea98ee303b. DR EuropePMC; PMC5775324; 29352173. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler v. 2.6 CC Sequencing Technology :: 454 CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4428 FT /organism="Maize chlorotic mottle virus" FT /host="Zea mays" FT /mol_type="genomic RNA" FT /country="Kenya" FT /collection_date="Feb-2012" FT /db_xref="taxon:12138" FT CDS 109..978 FT /codon_start=1 FT /product="32 kDa protein" FT /db_xref="UniProtKB/TrEMBL:K4P7U9" FT /protein_id="AFV60460.1" FT /translation="MPSPCTYGDPTFNSRILEAVVADVLGGTEDDGGPSLEEWFDAQTL FT SDYTNCATDPPMATAHTRENDIKSWTELSENFPDLVRYPESLVETLLDTEHECGHFYDV FT PDSFQISVTAMFTDRCKCQACDPDFQARSLSRALLGPLPESGDDAEWMEQAYTPDAELF FT VNEPTDDPIPTTDCKRPIQPTWSVDVYSKQVDSDWGLSDSTNVTVRSASSSLLPAGRGG FT IFFMCPRPEGIERVCLQVGAKIRSGTPNSGTVTNLPGGTGYGTEWSDDGYETQWSDGPY FT SIPSGLSD" FT CDS 128..3025 FT /codon_start=1 FT /transl_except=(pos:1442..1444,aa:OTHER) FT /product="P111" FT /note="putative replicase" FT /db_xref="GOA:K4PKN4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:K4PKN4" FT /protein_id="AFV60461.1" FT /translation="MATLPSIHAFWKLWWPMFSEERKMTVVQALRNGLTRKLFQITRIA FT QQILRWPPHIRERMTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTMFLIPFRF FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPFQPQTARDLSNPHGLWMSTRNKLTQTGGSVIQQTSRYVRLAVRFSLLAAGAYFSCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKNDKGELVSC FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYTRIYGY FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNTSLGNCILATAITHDFVTKL FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYA FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE FT EYFRSWTPTFEWSTTGILAEIPECLLLKHNPLPPT" FT CDS 128..1444 FT /codon_start=1 FT /product="50 kDa protein" FT /note="putative replicase" FT /db_xref="UniProtKB/TrEMBL:K4P9Y1" FT /protein_id="AFV60462.1" FT /translation="MATLPSIHAFWKLWWPMFSEERKMTVVQALRNGLTRKLFQITRIA FT QQILRWPPHIRERMTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTMFLIPFRF FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPFQPQTARDLSNPHGLWMSTRNKLTQTGGSVIQQTSRYVRLAVRFSLLAAGAYFSCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK" FT CDS 2986..3825 FT /codon_start=1 FT /transl_except=(pos:3190..3192,aa:OTHER) FT /product="P31 protein" FT /note="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:K4P7N8" FT /protein_id="AFV60463.1" FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRIVLASVVKEFNLGDFDLLDSVHLDENTG FT HRCRLSRAIGVLDRSNTKIPKDRHTQWRQVAGLPEVESSADVAWKQNPELFEPTRLSLD FT PTRSETVPHLREQPAPCLKFCLQCQQQLLTKFSRFQCAQGLTSQLERHPDTLGRPSGWQ FT HNHRCGTQLCSTLCASLGKHSQQTPLADTSQWHSSLITCYQYPLGWRMLPGSCPQLQ" FT CDS 2986..3192 FT /codon_start=1 FT /product="P7 protein" FT /db_xref="UniProtKB/TrEMBL:D1MF40" FT /protein_id="AFV60464.1" FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFN" FT CDS 3375..4085 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:K4P7V2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4P7V2" FT /protein_id="AFV60465.1" FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG FT TTCSMSEILLAVSATTTDQILEIPVCAGIDFPAGTPPRYIGAAKWLAAQSQMWNTIVFN FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI FT LQPALVPGPGLANH" XX SQ Sequence 4428 BP; 1197 A; 1116 C; 1116 G; 999 T; 0 other; gcggcaacag accccaacgc gctagacacg accttacagt tgactcacgt cttgcatcct 60 gtgagagctt tagcgtggga atttgcccct gactggcaat caggtttcat gccctctccg 120 tgcacatatg gcgaccctac cttcaattca cgcattttgg aagctgtggt ggccgatgtt 180 ctcggaggaa cggaagatga cggtggtcca agccttgagg aatggtttga cgcgcaaact 240 ctttcagatt acacgaattg cgcaacagat cctccgatgg ccaccgcaca tacgcgagag 300 aatgacatca agtcttggac ggagcttagt gaaaactttc cagaccttgt taggtatccg 360 gaaagtcttg tcgaaactct gcttgacacg gaacatgaat gtggacattt ttacgatgtt 420 cctgattcct ttcagatttc tgtcacagct atgttcacag atcgttgcaa gtgccaggca 480 tgtgatccag actttcaagc acggtctctc tcgcgggctc tgcttggccc gttgccggaa 540 tccggagacg atgcggagtg gatggagcaa gcatacactc cagatgcaga attgttcgtc 600 aacgagccca ctgatgaccc cattccaacc acagactgca agagacctat ccaacccaca 660 tggtctgtgg atgtctactc gaaacaagtt gactcagact gggggctcag tgattcaaca 720 aacgtcacgg tacgttcggc tagcagttcg cttctccctg ctggccgcgg gggcatattt 780 ttcatgtgtc ctcgcccgga aggcattgaa agagtatgtc tacaggtggg agctaaaatc 840 cgatcaggaa ctcccaactc gggaacagtc acaaatctcc caggtggaac aggctatgga 900 acagaatgga gcgatgatgg ttatgaaact caatggtccg acggccccta ttctatccct 960 tcaggactgt ctgactaaac acgttctggt tccagagatt gtggacgaag aaggcacagt 1020 gacacaaaaa gagcagtcca catttctcat ccgtgagttt ggccctgccg tcagaaacct 1080 agtgactctc gcaaaactag aattcggcgg gattccaaag aaaaccactg ccaacgaact 1140 cacggtttgg cggttcctgg tacggaagtg tgagcaagca aatatgaatc caactgactc 1200 ccgtactgcc atttcgatgg ccctgccata tgtgtttatg ccgtgccgta ctgatgttgg 1260 aagagcttca attccactgc gcgatgaatc cattgagatc tgtcgccaat atcgcgcaca 1320 atttgtggag gagacacccc tacggcgagt attcaacaac ccactgagcg gaaaagcatg 1380 gcgtaattgg gttaggcacc tgggtgggct ggatgaccca gccctattcc aggagctgaa 1440 ataggggtgt cttgaagagt ggcttggggt gcagtctcgg cgcacacgtg cgcggcaccc 1500 caaactccgt agccacttta aagacacgag acacaaaacc cgcagagtgt tccggattgc 1560 aggtttgggc aacctgtatg aatttggggt ccacaacaac tctgcggtga acctggaacg 1620 tggactgatg gaacgagtat tttatgtgaa aaatgataag ggggaactcg tttcatgccc 1680 tgagccaatt agtgggatat tttggaaaaa tttgaaggga ttcagaaata gcattgttca 1740 ccatgtggga cacagacatc cggtgtcacg agagacgttt ctcgcttact atacagggcc 1800 aaagcgcacc atgtatgaga aagcggtgaa ttccctctac gaaatgcctg tctcttatga 1860 cgatgctaaa ctgaaaacat ttgtcaaagc agaaaagatc aatctcacta agaaagctga 1920 tcctgtacca cgtgtgatcc aaccccgtgc tccccggtac aatgtggaac tgggtaggta 1980 tttgagaccg gttgagcatc caatctacca tgccatagac aagatttggg gtggtccgac 2040 tatcatgaaa ggttactcgg ttgaacagat tggaagacac atcgaaaacg cgtttcgatc 2100 gttcaccgat ccagtagcca ttggatttga tgcaagtcgg tttgatcaac acgtgagtgt 2160 tgaagctcta cgctgggaac atagcgtata cacaaggatt tatggctatc cagagcttct 2220 cacacaattg ctgcggtggc agattcacaa tcgtggaaca gcatacgctt cagacggcgc 2280 gttcaactac caggtggacg gtaaacgcat gagtggagac atgaacacat cattgggcaa 2340 ttgcatcctg gccacagcaa tcacacatga cttcgtgacc aagctgggga tcccagccag 2400 attaatcaac aatggagatg acaacgtcct gatctgtccg gcagtggagg taggcagagt 2460 cagacaggaa ctgtacagac attggttgaa ctacggattt gaagtcatat cagaagaacc 2520 tgtatacatc cttgaacagg ttgagttttg ccagatgcga ccagtctttg acggtacaca 2580 atacaccatg atgagagacc cacgcaccac catgtccaag gatgcatatg ctgttacccc 2640 ttttaacacg ccaaccgcag caaggaggtg gatgagagca gttggggaat gcggactcag 2700 ccttacagga ggcctccccg taaagcagga atactatgct gctctcgtga aacacggact 2760 agatccgaaa aacattaaac agggaaaaga ctttgacagt gggctatatt atcttagcaa 2820 actatccaat cgcaaatggc aggaggtcca agaaagcgct cgttactcat tctggcttgc 2880 cttcgggtac acaccagatg aacaacgagc gttagaggag tattttagat cttggactcc 2940 tacgtttgaa tggtccacaa cgggtatttt ggcagaaatc cccgaatgtc ttcttctcaa 3000 acacaatccc ctcccaccga cgtagcccgc agacaacaga ccggcactgc cgtgcgatcc 3060 gaagataacc atcgcaatca gttggaaaac attgctgttg gaaaactcac caaatctgaa 3120 ggagcacccg cccaacagaa cgtgattatt gcaaaagagg tggttatcaa taaccacttc 3180 aatttcaact gagctggagt gtgtgtgtgt agaatcgtcc tggcctcagt ggttaaggaa 3240 tttaatcttg gggattttga tctcctcgat tctgttcatc ttgacgaaaa cacaggacac 3300 cgttgccgtt tatcacgagc catcggtgta ctcgatcgat caaacacaaa aattccaaaa 3360 gatcgacata cacaatggcg gcaagtagcc ggtctacccg aggtagaaag cagcgcggac 3420 gtagcgtgga agcaaaatcc agagctattc gagccaaccc gcctgtccct cgacccaacc 3480 cgcagcgaaa ccgtccccca cctgcgggaa caacctgctc catgtctgaa attctgcttg 3540 cagtgtcagc aacaactact gaccaaattc tcgagattcc agtgtgcgca gggattgact 3600 tcccagctgg aacgccaccc cgatacattg gggcggccaa gtggctggca gcacaatcac 3660 agatgtggaa cacaattgtg ttcaactctg tgcgcatcac ttgggaaaca ttcacagcag 3720 acaccactag cggatacatc tcaatggcat tcctctctga ttacatgcta tcaataccca 3780 ctggggtgga ggatgttgcc aggatcgtgc cctcagctac aatagctctg aagaacagag 3840 ggccgtccat tgttatgcca caaaaccgca ctgtgttcag gtgtatacag gctggtcagt 3900 ttgctgcgtt gggcagcgcg gctgacaagc aaatgtattc tcccggacga ttcattgtgg 3960 ctatccccaa agctagtgca acacaagcgg taggccaaat caaaatctcg tactccgtgt 4020 cctaccgtgg agcagcaatc ctacaacctg ccctggttcc aggcccaggg ctggcaaatc 4080 attgagcata aggtgagccg gcatgaggtt gcaagaccgg aacaaccagt ccttctggca 4140 gagtcctgcc aatccaaagt gtctgggagc ctaaatcgta tactagtagt ttgcgtgatg 4200 accatgactg gagagtgggc ggcggctgcc aaccgcagac tgggcgtata tagtaagcct 4260 tgacccaccc atggaaaaca cgtatttacg aacggtacga catggtaact ggatacactt 4320 aaccctgggg caagtagatg ctaggaaact agcatcgggc cgcccacgag ggtttctgaa 4380 ctcaacggag tagaacgggg gggggtaatg gcccctctct tccggccc 4428 //