ID   JX286708; SV 1; linear; genomic RNA; STD; VRL; 939 BP.
XX
AC   JX286708;
XX
DT   31-OCT-2012 (Rel. 114, Created)
DT   28-NOV-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus coat protein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-939
RA   Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N.,
RA   Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P.,
RA   Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Mumford R.,
RA   Boonham N.;
RT   "Use of next generation sequencing for the identification and
RT   characterisation of Maize chlorotic mottle virus and Sugarcane mosaic virus
RT   causing maize lethal necrosis in Kenya";
RL   Plant Pathol. 0:0(2012).
XX
RN   [2]
RP   1-939
RA   Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N.,
RA   Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P.,
RA   Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Boonham N.,
RA   Mumford R.;
RT   ;
RL   Submitted (06-JUL-2012) to the INSDC.
RL   Plant Protection, Food and Environment Research Agency, Sand Hutton, York
RL   YO411LZ, UK
XX
DR   MD5; ff31b0872413b8b8442020d6ff727e74.
DR   EuropePMC; PMC5966901; 29792207.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Newbler v. 2.6
CC   Sequencing Technology :: 454
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..939
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Zea mays"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya"
FT                   /collection_date="Feb-2012"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..>939
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4PA61"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:K4PA61"
FT                   /protein_id="AFV60459.1"
FT                   /translation="SGQVDAGRQGGSGAQGGTPPAGSGGTGSGTQGNGGQTGSQGSGGQ
FT                   QGSGGGTGQGAAGNNGGGQTGGSSGTAGQRDKDVDAGSAGKISVPKLKAMSKKMRLPKA
FT                   KGKDVLHLDFLLTYKPQQQDISNTRATKEEFDRWYDAIKKEYEIDDTQMTVVMSGLMVW
FT                   CIENGCSPNINGNWTMMDGDEQRVFPLKPVIENASPTFRQVMHHFSDAAEAYIEYRNST
FT                   ERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLD
FT                   GNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
XX
SQ   Sequence 939 BP; 293 A; 198 C; 265 G; 183 T; 0 other;
     tctggtcaag ttgacgcagg gagacagggc ggtagcggcg ctcaaggagg cacaccgcca        60
     gcaggaagtg gaggcactgg atctggcact caaggcaatg ggggtcagac gggatcccaa       120
     ggaagtggcg gtcaacaagg gtccggtggg ggcactggtc aaggagcagc tggaaacaac       180
     ggcggaggtc agacaggagg ctctagtggg acagctggtc agagagataa ggacgttgac       240
     gcaggctcgg ctggaaagat atccgtacca aagcttaaag ccatgtcaaa gaaaatgcgc       300
     ttgccaaagg caaaaggaaa agacgtcttg catttggact ttttgttgac atacaagcca       360
     caacagcagg acatatcgaa cacaagagca actaaggaag agttcgatag atggtacgac       420
     gccataaaga aggagtacga gatcgatgat acacaaatga cagtcgtcat gagtggtctg       480
     atggtctggt gcattgaaaa tggttgctca ccaaacataa acggaaattg gacgatgatg       540
     gatggggatg aacaaagagt tttcccacta aaaccagtta ttgaaaacgc atctccaact       600
     tttcgacaag ttatgcatca tttcagtgat gcagctgaag cgtatataga atacagaaat       660
     tctactgagc gatacatgcc aagatatgga cttcagcgaa atctcaccga ctatagctta       720
     gcgcggtatg cttttgattt ctatgaaatg acttcacgca caccagctag agctaaggaa       780
     gcccacatgc agatgaaagc cgcagcagtt cgtggctcaa acacacgact gttcggcttg       840
     gacggaaatg tcggcgagac tcaggagaat acagagagac acacagctgg cgacgttagt       900
     cgcaatatgc actctctgtt gggagtgcag caacatcac                              939
//