ID JX274036; SV 1; circular; genomic DNA; STD; VRL; 2589 BP. XX AC JX274036; XX DT 19-SEP-2012 (Rel. 114, Created) DT 09-JUL-2018 (Rel. 137, Last updated, Version 5) XX DE Porcine associated porprismacovirus 1 isolate Cass, complete genome. XX KW . XX OS Porcine associated porprismacovirus 1 OC Viruses; Smacoviridae; Porprismacovirus. XX RN [1] RP 1-2589 RX DOI; 10.1007/s00705-012-1470-0. RX PUBMED; 22972681. RA Sikorski A., Arguello-Astorga G.R., Dayaram A., Dobson R.C., Varsani A.; RT "Discovery of a novel circular single-stranded DNA virus from porcine RT faeces"; RL Arch. Virol. 158(1):283-289(2013). XX RN [2] RP 1-2589 RA Varsani A., Sikorski A., Dayaram A., Dobson R.C.J., Argueello-Astorga G.R.; RT ; RL Submitted (05-JUL-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 322655440023c11316e02cc45f4d83a3. DR EuropePMC; PMC6453971; 30962460. XX FH Key Location/Qualifiers FH FT source 1..2589 FT /organism="Porcine associated porprismacovirus 1" FT /host="porcine" FT /isolate="Cass" FT /mol_type="genomic DNA" FT /country="New Zealand" FT /isolation_source="feces" FT /collection_date="01-Feb-2011" FT /db_xref="taxon:2170116" FT stem_loop join(2580..2589,1..19) FT misc_feature 1..8 FT /note="nonanucleotide sequence; other site" FT CDS 479..1528 FT /codon_start=1 FT /product="putative capsid protein" FT /db_xref="UniProtKB/TrEMBL:J9UDJ8" FT /protein_id="AFR68937.1" FT /translation="MATNYVKARYQEIYDFGTQAGKTTILGVHSPTGNKVQEMLGGFFR FT QFRKYRYSGCTVTMVPAAQLPADPLQVSFEAGALTIDPRDMLNPILFHGAHGESLNEAL FT NLIYNTSTAEMVDGASVKEIRDQFSISSWGSENAYYSALCDPSFKKFGIQSGAKVNLRP FT MVHPVVLNHAMLPSDSGVEYDNASNHYDMASDGVGQILGDNRIGQGAIGNIAEVSGAEA FT VSVVPRQMFTSGLRPLGWLNTTQFAAPINVPNGSTNIDWFLSYSYIPKIMMGVFILPPS FT YTQEMYFRLIINHYFEFKDFSTALTYSPDGARLVYTETIPDPSGGASLSSASLDVENGT FT IAKTTDGVF" FT CDS complement(1821..2552) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="UniProtKB/TrEMBL:J9ULH3" FT /protein_id="AFR68936.1" FT /translation="MQTYMMTIPRTVSKRALRIMIEKNDCKKWTIGKEKGKNGYEHWQI FT RIETSNDDFFEWMQDHIPTAHIEKSDSGVDECRYETKEGQYVTYSDRVQNLMQRYGAFR FT PNQKRAMQALEATNDRQVVVWYDETGNVGKSWFTGALWERGLAYVTPPTIDTVKGLIQW FT VASCYIDGGWRPYVIIDVPRSWKWSEQLYSAIESIKDGLIYDTRYHSRMINIRGVKVLV FT MTNTMPKLDKLSKDRWCICTF" XX SQ Sequence 2589 BP; 563 A; 679 C; 619 G; 728 T; 0 other; tagattacct tacgtcgttt acgactataa caaaaaggag ttatgttggt tatggcatac 60 tacagaaggc gcagaagcta cggaagaagg acttacggtc gcaggtacta tagaaggagg 120 cgctactgat ggttgctccg gttatcgtcg ttgccggtgc gatggccggt tcttccattc 180 tcaactacgt tctcaatcag aagactaccc gcgctcagat cagacagtcc gattatgtct 240 cggattattc aaggcgttac aatgcggaaa atagaagata ttgggccgat tactacaaga 300 acacgggttt tcgtcctagg tatcctatgc gctcaggtgc tgagtacaat cttagtgctc 360 tgtatggtgc tcgtacctct agggccaatg ctattgcctc tcagtatcgt gctggtgctg 420 gtgtgggtgt atctggcgct tatggactta atgcgatcta tagaaaaagg tgataaaaat 480 ggcaactaat tatgtaaaag cgagatatca ggagatctac gatttcggta ctcaggctgg 540 taaaactact atcctcggtg tccactctcc taccggtaac aaggttcagg aaatgctcgg 600 cggattcttc agacagttca ggaaataccg ctacagtgga tgcactgtga ccatggttcc 660 tgctgctcag cttcccgcag atcctctcca ggtttcgttc gaggctggtg cccttaccat 720 cgatcctcgc gatatgctga acccgatcct gtttcatggt gcccacggtg aatcactgaa 780 tgaggccctg aatctgatct acaacacctc aaccgctgag atggtggatg gtgcctctgt 840 caaggagatc cgtgaccagt tttcgatctc ttcatgggga tctgagaatg cgtactactc 900 tgcactgtgc gatccttctt tcaaaaagtt cgggatccag agcggtgcca aggttaatct 960 ccgtcccatg gttcatccgg ttgtactcaa tcatgctatg ctcccgtccg attccggagt 1020 cgagtatgac aatgcctcca accattacga tatggcctcg gatggtgtcg gtcagatcct 1080 cggagataat cgcatcggtc agggtgctat cggaaatatc gctgaggtta gcggagctga 1140 ggctgtctct gttgttcctc gtcagatgtt cacttccggt cttaggcctc tcggatggct 1200 gaacactacc cagttcgccg ctcctatcaa tgttcctaat ggatccacca atatcgattg 1260 gttcctgtcc tactcgtaca ttccgaagat catgatgggt gttttcatcc tccctccctc 1320 gtacactcag gaaatgtact tcaggctgat catcaaccac tacttcgagt tcaaggactt 1380 cagtaccgcg ctcacctact ctcccgatgg agcaaggctc gtctacactg aaaccatccc 1440 tgatccctcc ggcggtgctt ccctctctag tgcctccctc gatgtggaga atggaacgat 1500 tgcgaaaacc accgatggag tgttttgatg aaggtaatca tgaaaatcat gatcaaggtc 1560 cgtgattggt tggatgcacg gatcgaatat cacaaagaac cgtaaacatc ggggtaattc 1620 tccggttaaa cctcttcctt tttgttgcta atttaccggc aagtaacctt tgtcttctgt 1680 ggggtaaggg cccccgaata ggcggagcct ccccagtgga acgttctcag cgtaggggtc 1740 tttcctccac ccccctatac ccctaaaggg gtatagaagg ggctccgcta gtgttacgaa 1800 aaggagcccc ctcggcctcc tcagaatgtg catatacacc acctgtcttt ggagagcttg 1860 tctagtttcg gcatggtgtt tgtcatcacc agaaccttta cccctcttat gttgatcatt 1920 ctcgaatgat accgggtgtc gtagatcagg ccgtccttta tgctctcgat cgcactgtac 1980 agttgttccg accacttcca cgatctcggt acgtcgatga tcacgtatgg tctccatccc 2040 ccgtctatgt agcaggatgc gacccattgg atcagaccct tcaccgtgtc gattgtcggc 2100 ggtgtgacgt atgctaggcc acgttcccac aatgcccccg taaaccacga tttaccgacg 2160 tttcccgtct cgtcgtacca taccactacc tgacggtcgt tcgtcgcttc tagggcctgc 2220 atggcccgtt tctggttcgg tctgaaggcg ccatacctct gcatcagatt ttgaacacgg 2280 tctgaatacg tgacgtattg tccttccttg gtttcgtatc tgcactcatc cactccggag 2340 tcggattttt caatgtgtgc ggttgggatg tgatcctgca tccactcgaa gaaatcgtcg 2400 ttgcttgttt cgatccggat ctgccagtgt tcgtatccat tttttccctt ctcctttcca 2460 attgtccatt ttttgcagtc gttcttttcg atcatgatcc ggagggcgcg cttgctcacg 2520 gtcctcggaa tggtcatcat ataggtttgc ataaacgccg tattgcgaaa gcaatttata 2580 acggcgcaa 2589 //