ID JX270684; SV 1; circular; genomic DNA; STD; VRL; 2745 BP. XX AC JX270684; XX DT 07-OCT-2012 (Rel. 114, Created) DT 07-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Croton yellow vein mosaic virus clone M4A segment A, complete sequence. XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2745 RA Roy A., Poreddy S., Prasad T.V., Bag M., Singh R.; RT "First report of a begomovirus associated with the leaf curl disease of RT four Brassica spp. in India"; RL Unpublished. XX RN [2] RP 1-2745 RA Roy A., Poreddy S., Prasad T.V., Bag M., Singh R.; RT ; RL Submitted (04-JUL-2012) to the INSDC. RL Germplasm Evaluation Division, National Bureau of Plant Genetic Resources, RL Pusa, New Delhi, Delhi 110012, India XX DR MD5; 4a76821e317609be44608d8bee2091e5. DR EuropePMC; PMC5394710; 28466040. DR EuropePMC; PMC6344024; 30673741. XX FH Key Location/Qualifiers FH FT source 1..2745 FT /organism="Croton yellow vein mosaic virus" FT /segment="A" FT /host="Brassica rapa" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /collection_date="Dec-2011" FT /clone="M4A" FT /db_xref="taxon:207697" FT gene 142..498 FT /gene="AV2" FT CDS 142..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:D3HIF7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIF7" FT /protein_id="AFU34511.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT gene 302..1072 FT /gene="AV1" FT CDS 302..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8B8N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B8N7" FT /protein_id="AFU34512.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1075..1479) FT /gene="AC3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:K0HE07" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K0HE07" FT /protein_id="AFU34513.1" FT /translation="MDSRTGEPITAAQAGNGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGLFLRVFKTQVLKFLNNLGVISINT FT VIKSVDHVLWTVLHHVVYVDQSYSIKFNLY" FT gene complement(1220..1624) FT /gene="AC2" FT CDS complement(1220..1624) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:K0H4A5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K0H4A5" FT /protein_id="AFU34514.1" FT /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHHRSNTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT gene complement(1527..2612) FT /gene="AC1" FT CDS complement(1527..2612) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:K0GX49" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K0GX49" FT /protein_id="AFU34515.1" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEIIQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFSSSSFDKVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGVPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL FT YSGSNQSAAQDSQEGDQASTS" XX SQ Sequence 2745 BP; 751 A; 548 C; 639 G; 807 T; 0 other; accggatggc cgcgaaaaaa agtgggcccc acggcgcact aactgacaaa gacatctcca 60 ccaatgaaaa gagctcctca gagcttaatt gttttgtggt cccctattta aacttggtca 120 ccaagtagtg tattgcgcac aatgtgggat ccattagtaa acgagtttcc cgaaaccgtt 180 cacgggttta gatgtatgtt agcagttaaa tatcttcagt tagtagagaa gacttatgct 240 cctgacacat tggggcacga tttaattagg gatttaattt cagtaattag ggctagaaat 300 tatgtcgaag cgtccagcag atataatcat ttccacgccc gcttcgaagg tacgccgtcg 360 tctcaacttc gacagcccat atgtgaaccg tgctgctgcc cccattgtcc gcgtcaccaa 420 agcaaaggca tgggcgaaca gacccatgta ccggaagccc aggatgtaca ggatgtacag 480 aagcccagat gtccctaagg gatgtgaagg cccatgtaag gtgcagtcct ttgatgcgaa 540 gaatgatatt ggtcacatgg gtaaggttat ttgtctttct gatgttacta ggggtattgg 600 gctgacccat cgagtaggga aacgtttctg tgtgaagtca ttgtattttg ttggcaaaat 660 atggatggac gagaatatca agaccaagaa ccatacgaat acggttatgt tttggatcgt 720 tagagatagg cgtccttcag gtaccccaaa tgatttccag caagtgttca atgtttatga 780 taatgagccc tctacggcta ctgtgaagaa cgaccagcgt gatcgtttcc aggtgttgag 840 gaggtttcaa gcaacagtca caggtggtca gtatgctgct aaggaacaag ctataattag 900 gaaattctat cgtgttaaca attatgtggt gtataatcac caggaagctg ggaagtatga 960 aaatcacact gagaatgctt tgttgttgta tatggcatgt actcatgcct ctaaccctgt 1020 gtatgctact ttgaaagtta ggagttactt ctacgattct gtaacaaatt aacattaata 1080 aagattgaat tttattgaat atgattggtc tacatataca acgtgatgta atacagtcca 1140 taatacatga tcaaccgatt taattacagt gttaatactg ataactccta agttatttaa 1200 aaacttaaga acttgggtct taaagaccct taagaaaaga ccagtcggag gctgtgaggt 1260 catccagatt cggaaggcta ggaaacattt gtgtatcccc aacgctttcc tcaggttgtg 1320 attgaactgt atttgaacgg tgatgatgtc ttccttcatt aggaatggcc tgttgtggtg 1380 ttctgttatc ttgaaataca ggggattttg aatctcccag ataaacacgc cattccctgc 1440 ttgagctgca gtgatgggtt cccctgtgcg tgaatccatg gtcgtggcag gctatggata 1500 tgaagtatga acacccacac ggtagatcaa ctcgtcgacg cctgatcccc ttcttggcta 1560 tcttgtgctg cactttgatt ggaacctgag tagagtgggc cttcgagggt gatgaaggtc 1620 gcattcttta aagcccaatt cttgagtgca gcatttttct cttcatccaa gaactcttta 1680 taactggaat tgggtcctgg attgcagagg aagatagtgg gaactccgcc tttaatttga 1740 actggctttc cgtactttgt atttgattgc cagtcccttt gggcccccat gaactcctta 1800 aagtgcttta ggtaatgggg atctacgtca tcaatgacgt tataccaggc atcattattg 1860 tagacctttg ggctaaggtc tagatgtcca cacaaatagt tatgtggtcc gagtgatctg 1920 gcccacatcg tcttgcccgt tctactatca ccctcaatca ctatacttat gggcctcaaa 1980 ggccgcgcag cggcactgac aacgttctcg gcagcccatt cctcaagttc ttgtggaact 2040 ttgtcaaaag aagaagaaga aaaaggagat acataaacct ccaccggagg tgtaaaaatc 2100 ctatctaaat tacattttaa attatgatat tgaaaaataa aatctttagg gagtttttcc 2160 ctaattattg ctaaagctgc gtcagctgaa cctgcattta gggcctctgc tgctgcatca 2220 ttagctgtct gttgacctcc tcgagcagat cttccatcga tctgaaactg accccagtcg 2280 atgtaatcac tgtccttctc gatgtaggac ttgacatcag agctggactt tgctccctgg 2340 aagtttgggt ggaattggga ggagttatta gggtgagtga catcgaaatg tctggggttt 2400 ctgaacttgg ctttaccttt gaactggatg agggcatgga tatgcagaga cccatcttgg 2460 tgtttttctt gtgccactct gataaataat ttatcagatg ggcaatttat tgactgaata 2520 atttcgagca tttgctcttt gggtattggg cattttggat aagtgaggaa gatatttttg 2580 gcattaacac aaaaagagtt aatacgaggc atattgaatt ggggacactc aaaactctga 2640 ggaatggggg actcggggga cgcatttata tggtgtccct aaatggcact ttcgtaattt 2700 cgtaagaaat ttcaaaattc ccaaagcggc catccgtata atatt 2745 //