ID   JX262389; SV 1; circular; genomic DNA; STD; VRL; 1379 BP.
XX
AC   JX262389;
XX
DT   17-SEP-2012 (Rel. 114, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Cotton leaf curl Burewala alphasatellite clone HJP06, complete sequence.
XX
KW   .
XX
OS   Cotton leaf curl Burewala alphasatellite
OC   Viruses; Alphasatellitidae; Geminialphasatellitinae;
OC   unclassified Begomovirus-associated alphasatellites.
XX
RN   [1]
RP   1-1379
RX   DOI; 10.1007/s00705-013-1613-y.
RX   PUBMED; 23361863.
RA   Kumar J., Gunapati S., Singh S.P., Kumar A., Lalit A., Sharma N.C.,
RA   Puranik R., Tuli R.;
RT   "A new betasatellite associated with cotton leaf curl Burewala virus
RT   infecting tomato in India: influence on symptoms and viral accumulation";
RL   Arch. Virol. 158(6):1349-1353(2013).
XX
RN   [2]
RP   1-1379
RA   Kumar J.;
RT   ;
RL   Submitted (30-JUN-2012) to the INSDC.
RL   Agri-Biotechnology, National Agri-Food Biotechnology Institute, C-127,
RL   Phase-8, Mohali, Punjab 160071, India
XX
DR   MD5; ddbaba2538a25b89b934b2c989faec2b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1379
FT                   /organism="Cotton leaf curl Burewala alphasatellite"
FT                   /host="tomato"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="Jul-2010"
FT                   /clone="HJP06"
FT                   /db_xref="taxon:713091"
FT   gene            77..1021
FT                   /gene="alpha-rep"
FT   CDS             77..1021
FT                   /codon_start=1
FT                   /gene="alpha-rep"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:J9SQC1"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:J9SQC1"
FT                   /protein_id="AFR54469.1"
FT                   /translation="MPTIQSQWWCFTVFFLTATAPDLVPLFENTHVSYACWQEEESPRL
FT                   DVATCKAICNEGSEDPGQVKAIFGDLKPHLEKQRARKTDDARPYCMKPETRVSGPFEFG
FT                   EYCPAGSHRRRQREPVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSASEIQISNLKSWQ
FT                   SRLKTPLERDPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIGC
FT                   LGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLIKCIHVVVVSNFLPDFE
FT                   KISSDRVHVIPCIPCGVCLKHHTVLMYVWRYIE"
XX
SQ   Sequence 1379 BP; 405 A; 264 C; 318 G; 392 T; 0 other;
     acccagcctc ggttccctct ccttggttcc ctcgtgcttt tcacgtgctc tctctcttct        60
     gtgtttttaa gcgaagatgc ctactattca gtcacaatgg tggtgtttca cggttttctt       120
     cctgaccgct acggctcctg acctggttcc cctgttcgaa aacactcacg ttagttatgc       180
     ctgctggcaa gaggaagagt ctccacgact cgacgtcgcc acctgcaagg ctatctgcaa       240
     cgaagggtca gaggaccctg gtcaggtgaa ggctatcttt ggggatttga agccccatct       300
     tgagaaacag cgagctcgta agacagacga tgctcgcccc tactgtatga aacctgaaac       360
     tagggtttct ggtcccttcg aatttgggga atactgtcct gctggttctc acagacgccg       420
     acaaagggaa cctgtaattc gatctccggt gagaatggca gaggaaaatc cgtccgtctt       480
     ccgacgagta aaggcaaaga ttgctgagga agaattccag aagagcgcgt ctgagattca       540
     aatttcaaat ttgaaatctt ggcaatcgcg cctgaagacg cccctcgaac gggacccaga       600
     tgaccgcact atcttctggg tttacggacc tgatggtggg gaaggaaaat ccaccttcgc       660
     cagagacctg tacagaagtg ggtcctggtt ctatacacgt ggaggatctg cagataatgt       720
     agcttaccag tacataggat gtttaggcaa taatattgta tttgatattc ctcgtgataa       780
     gaaggattat cttcaataca gtttaataga gatgtttaaa gataggttaa tagttagtaa       840
     taagtacgag cctcttatgg ctcctttaat taaatgtatt catgttgtag ttgtgtctaa       900
     ttttctccca gactttgaga agattagtag tgatagggtt catgtaatcc catgtatacc       960
     atgtggtgtt tgtcttaaac accatacagt gctgatgtat gtgtggcgat acattgaata      1020
     agaatatttg gaataatctg agatgtttac cgtataatag attatattaa agagagaagg      1080
     gccgcgcagc ggcaataaca tgagtaattt tgcttcttga aaacaagaag gaatgaaatg      1140
     aaaaaagaaa taaaaaaaaa ttgtaatata aagatgtggg acccacattt atattgaaat      1200
     aaaaataaat ataaaaataa ctaaataaat atcactattc attttgcgga aggacataat      1260
     tgtaaataat gaaagttttg ggtaacgcgg tgtaatttta aaagacttta gggtgtgcgc      1320
     ttgcaatttg ccgggatcct aggatataaa taacacgtca ccgaggctgg tgtagtatt       1379
//