Dbfetch
ID JX256248; SV 1; linear; genomic RNA; STD; VRL; 2990 BP. XX AC JX256248; XX DT 16-SEP-2012 (Rel. 114, Created) DT 16-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Citrus leaf rugose virus isolate ATCC PV 195 segment RNA2, complete DE sequence. XX KW . XX OS Citrus leaf rugose virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2990 RA Hajeri S., Gowda S., Garnsey S.M.; RT "Complete nucleotide sequence of Citrus leaf rugose virus (CiLRV) Florida RT isolate"; RL Unpublished. XX RN [2] RP 1-2990 RA Hajeri S., Gowda S., Garnsey S.M.; RT ; RL Submitted (27-JUN-2012) to the INSDC. RL Plant Pathology, Citrus Research & Education Center, Institute of Food & RL Agricultural Sciences, University of Florida, 700 Experiment Station Road, RL Lake Alfred, FL 33850, USA XX DR MD5; 50e6c26d15325335ec3dd9b9cf30ab71. XX FH Key Location/Qualifiers FH FT source 1..2990 FT /organism="Citrus leaf rugose virus" FT /segment="RNA2" FT /host="Citrus limon L. (Eureka lemon)" FT /isolate="ATCC PV 195" FT /mol_type="genomic RNA" FT /country="USA:Florida" FT /collected_by="Subhas Hajeri" FT /collection_date="02-May-2011" FT /db_xref="taxon:37126" FT 5'UTR 1..73 FT CDS 74..2572 FT /codon_start=1 FT /product="replicase protein 2a" FT /note="RNA-dependent RNA polymerase protein 2a" FT /db_xref="GOA:J9RV45" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J9RV45" FT /protein_id="AFR46583.1" FT /translation="MDTLLHFVKFSKVLSFLDVNATFEIPLSDEQIKYIQLWMLRDVVI FT PAMKFSWCGFILLDKLEMELERIYQNDYSPPILMHVPSQLVTDELPDFIDEFGEVPEEA FT YLSPEEKEKIHEPTFLNHEHWGSESSGSSFLDEIEMLYDETVKDDVVQDVSADMPKDYQ FT IMWNDGAVDAVWSSKFEVEEPPKPKFKPQQTDRICDPVIIQDAINDIFPFHHEMDDTYF FT QTWVETQDISLEVSKCWLDASNFKDFTKGQQTYAVPAYQSGATSKRVNTQRETLLAVKK FT RNMNIPELQSTFDLDAEVATCFKRFCTHVVDIPRSKRLPQMLGTEIQFFSDYLAGKNPP FT LSEYQGPLTLQSLDKYMHMVKTIVKPVEDNSLKFERPLCATITYHKKGIVMQSSPLFLS FT AMSRLFYVLKSKIHIPSGKWHQLFTLDAAAFGAAKWFKEVDFSKFDKSQGELHHKVQKM FT IFDLLKLPPEFVEMWFTSHERSYITDRDTGVGFAVDFQRRTGDANTYLGNTLVTLICLA FT RVYDLCDPKITFVIASGDDSLIGSVEELPRAPEHLFTSLFNFEAKFPHNQPFICSKFLV FT SVDLVCGGREVIAVPNPAKLLIRMGRRDCQYQALDDLYTSWLDVIYYFRDSRVCEKVAD FT LCAYRQTRRSSMYLLSALLSLPSCFANKKKFKLLCYHLTEEECLRKAKPSSITNGHVEK FT EQRVNGCRDSRIIQARSEIPAEESRRIQKNSPRPDKGFQAYPRRKSRGCWMAYVPKILQ FT AHDSSGRIPDAVTRKSFSSIRGSLGLEPDPSCGIGVGARTTSSFSGKNTRPRHRFRVEG FT VHQSSRGYPADLPAYNRRSS" FT CDS 2139..2801 FT /codon_start=1 FT /product="putative RNA silencing suppressor 2b" FT /db_xref="UniProtKB/TrEMBL:J9RDG1" FT /protein_id="AFR46584.1" FT /translation="MDMSRKSNVSMDAVTRELFKREVKYRLRKAEEFKRTARDPIRDSR FT HTHAGNRVDVGWHMSPKFYKPMTHLGVFLMLSLVNLSAVSEARWALNQIPVVVSESAPE FT PPARLVVKIPDLAIDFELKEFTNPAVVIRQIYRRIIAEVPEGWYELKSWSLASYGDVRS FT RLSLVSKAKVHLTIPGSDWAYTLSLTDVVSGLALPKLPIPERYLKMPISVSFDRDEM" FT 3'UTR 2802..2990 XX SQ Sequence 2990 BP; 795 A; 618 C; 693 G; 884 T; 0 other; gtattgtgaa acgttatttc gttcacgacc cggattaatc agttattctg agtatatacc 60 cgttagctac tcaatggaca ctttactaca ttttgtaaag ttttctaaag tcctaagttt 120 tttggacgtt aatgccacgt ttgagatccc actatctgat gaacaaatta agtacattca 180 gttgtggatg ctccgtgatg tggtgattcc agccatgaag ttttcttggt gtggattcat 240 cttgctcgat aagttggaga tggaacttga acgaatttat cagaatgatt attctccacc 300 tatcttgatg catgttccct ctcagttggt tactgatgag ttgccagact tcatcgatga 360 gttcggtgaa gtacctgaag aagcttactt gagtcctgaa gaaaaagaga agatacatga 420 acccactttc ttgaaccatg aacattgggg aagtgagtct tcagggtcga gtttcctcga 480 tgaaatcgag atgctgtacg acgagactgt taaggatgat gtcgtacaag atgttagtgc 540 cgacatgccc aaggattacc agatcatgtg gaatgatgga gctgtcgatg ccgtttggtc 600 tagtaagttt gaagttgagg agcctcctaa gcccaaattt aagcctcaac agaccgatcg 660 aatatgtgat cctgtgataa ttcaggatgc cataaatgat atattcccat ttcatcatga 720 gatggatgat acttatttcc agacttgggt agagacgcag gatatatctc ttgaagtttc 780 aaaatgttgg cttgatgcgt caaattttaa ggattttacc aagggacagc agacttatgc 840 tgttcctgcg taccagtctg gtgccaccag caagcgtgtt aatactcaac gcgaaacatt 900 gcttgcagtg aagaagagga atatgaatat tccagagctt cagtctacct ttgatctaga 960 tgctgaggta gccacatgct ttaaacggtt ttgcacgcat gtggttgata tacctagatc 1020 aaagagattg cctcaaatgc tgggaactga gattcaattc ttttccgact atttggcggg 1080 aaagaatcca ccactctcag agtaccaagg tccattgact ctacagtccc ttgacaagta 1140 tatgcacatg gttaaaacca ttgtaaaacc tgtagaggat aattctttga agttcgaaag 1200 acctctttgt gccacgatca catatcataa gaaagggatc gtgatgcagt cctcaccact 1260 gtttttaagt gcaatgtcaa gattgttcta tgtgttgaag tctaagattc acattccgag 1320 tgggaaatgg catcaacttt tcaccctcga tgcggccgcg tttggcgcgg ctaagtggtt 1380 taaagaagtt gacttttcga agtttgataa gtcgcaaggt gagttacatc ataaagttca 1440 gaaaatgatc ttcgacttat taaaattgcc tcccgaattc gtggagatgt ggtttacttc 1500 tcatgaaagg tcatacatca ctgatcgcga cacaggtgtc ggtttcgctg tcgatttcca 1560 gagaaggact ggagacgcca atacatatct gggaaacact ttggtaaccc ttatatgttt 1620 ggcgcgagtt tatgacttat gtgatcctaa aatcacattc gttatagcct cgggggatga 1680 ttctcttatt ggctccgttg aggagttacc acgggcccct gagcatcttt tcaccagtct 1740 ttttaacttt gaagcgaagt ttccacataa tcaaccattc atttgttcaa aatttttagt 1800 gtcggttgat ttggtgtgtg gagggcgcga agttattgcc gtgccgaatc cagcgaagct 1860 tttaatacgt atgggtcgtc gcgactgcca ataccaagcc ttagatgatt tgtatacctc 1920 ttggcttgat gtcatttatt atttccgaga ttcccgagtt tgtgaaaaag tggctgattt 1980 gtgcgcctac agacaaactc gacggtcatc gatgtatttg ctcagcgcat tgttgagctt 2040 acctagttgt tttgctaata aaaaaaaatt taaattgctc tgttatcact taacagagga 2100 agagtgtctg aggaaagcaa aacctagtag tattaccaat ggacatgtcg agaaagagca 2160 acgtgtcaat ggatgccgtg actcgagaat tattcaagcg cgaagtgaaa taccggctga 2220 ggaaagccga agaattcaaa agaacagccc gagacccgat aagggattcc aggcataccc 2280 acgcaggaaa tcgcgtggat gttggatggc atatgtcccc aaaattttac aagcccatga 2340 ctcatctggg cgtattcctg atgctgtcac tcgtaaatct ttcagcagta tcagaggctc 2400 gctgggcctt gaaccagatc ccagttgtgg tatcggagtc ggcgcccgaa ccaccagctc 2460 gtttagtggt aaaaatacca gacctcgcca tagatttcga gttgaaggag ttcaccaatc 2520 cagccgtggt tatccggcag atttaccggc gtataatcgc cgaagttcct gagggttggt 2580 atgaattgaa gtcgtggagc cttgcctctt atggagatgt tcgctcacga ctttcattgg 2640 ttagtaaggc taaggttcat cttactattc ccggttcaga ttgggcttat accctctctt 2700 taaccgatgt ggtttctggg cttgccttgc ccaagttacc aattcctgag agatatctca 2760 agatgcccat ctccgtctct ttcgacagag atgagatgta gtctcacttt cgtgagctga 2820 tgaagggccc tccggggtgt gctcagcact taacctaagt caagttcata tgcccacctt 2880 tgctgctccg ggtggatgcc tcgtgcaaat gctatgaatg cctacgtgta tatgcgtaga 2940 tgcctatatt ttctctcctg agaaaatata gatgcctccc aaggagatgc 2990 //