ID JX255736; SV 1; circular; genomic DNA; STD; VRL; 7931 BP. XX AC JX255736; XX DT 03-SEP-2012 (Rel. 114, Created) DT 26-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Rice tungro bacilliform virus isolate Punjab, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-7931 RX DOI; 10.1007/s11262-012-0857-z. RX PUBMED; 23197138. RA Mathur S., Dasgupta I.; RT "Further support of genetic conservation in Indian isolates of Rice tungro RT bacilliform virus by sequence analysis of an isolate from North-Western RT India"; RL Virus Genes 46(2):387-391(2013). XX RN [2] RP 1-7931 RA Mathur S., Dasgupta I.; RT ; RL Submitted (27-JUN-2012) to the INSDC. RL Plant Molecular Biology, University of Delhi South Campus, Benito Juarez RL Road, New Delhi, Delhi 110021, India XX DR MD5; 1a552ac0c246d6cbe0bee2feb8d5a3e7. XX FH Key Location/Qualifiers FH FT source 1..7931 FT /organism="Rice tungro bacilliform virus" FT /isolate="Punjab" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="1998" FT /db_xref="taxon:10654" FT CDS <98..670 FT /codon_start=1 FT /product="P24" FT /note="ORFI" FT /db_xref="UniProtKB/TrEMBL:J7JWQ3" FT /protein_id="AFQ62090.1" FT /translation="IESRLEKLGFLDLAIWGSPKTQKYSLSTENIAFYCYFHKSENTST FT TGHNHTFHSDNKQLNTIVDLIVKHAEKTKNIKEELDNYSKLLEKILELKPTKKQIEKLL FT ENQNTINQNFDYIKEQNSQIEKSLRKTNKLEDSINTLLVEIQQARPKEVELRTLKIAEQ FT NSKAIEKFEKEIQDLREILEYLKHQST" FT CDS 667..1002 FT /codon_start=1 FT /product="P12" FT /note="ORFII" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:J7K3B5" FT /protein_id="AFQ62091.1" FT /translation="MSADYPTFKEALEKFKDLESETANKDKFGWVFTLQGIKTTADVNL FT ASKGLVQLYALQEIDKKINHLSAQVGKIPTTSGSSSSAGAIVPAGSNTQGQYKAPPKKG FT IKRKYPG" FT CDS 999..6023 FT /codon_start=1 FT /product="P194" FT /note="ORFIII" FT /db_xref="GOA:J7JVS2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:J7JVS2" FT /protein_id="AFQ62092.1" FT /translation="MSLRPFSGTSRTLTQDSASESNIKKGKSSTKRELIEEIDVAKEIE FT NFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEEAISVTTNAFITSLFPNEVIKN FT VKNQGKLYYHIGMMAIGIKGLHRKKIGTKVMVMFYDDSFGKAKEASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSIAIKTIGRLTTNIQARYKMNVKN FT IVEQISSQGITMVAPMEIDSSHLDGNEWNLSKFMIQEGTSRVPSKALIYQNLHGGESLR FT FSNYTQTKMHDPTEINSDEDEDLKILGEQLNAKMATLQEETLEQKLERIKEEKKQLLVK FT LEAKKKEIELKSLKMAVIEDDFNPNNEYLDDSYSELEDLEFEQLGLTGWEDLDQESLET FT EEVTEWENPNQVLTREIKAFKSVSEQIEDIFGELLKEHGNYDMALKNLEERYDLRNLEG FT AKNLEEIAKASTSKMMDVKPVKRPKEEQTAYEDDMRDDWRRKELTANPEVSSKDRNFER FT IGGSYKKNFYPSKSEILNLDHVPPQFYYDQIITWEGIVKNEWEARKKDGMDMWSWMDGR FT ITGMVLYLIQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAL FT RELEALNCEDPVKIQPFMAEYLKKAAEAKKGFDVIYVERLFDRLPEAVGKLIKKEFLDA FT GNSYEAGIGVAVSYISTWMRLKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKTLKRVT FT NYNRNKRKNYVRKPNIKRKCRCYICQDENHLANRCPRRYVNQARASMIEGLEEDIVSIA FT SDDEDYENFFEIIELEEFLSKSGQQDHEHTWETGGKKEKTCDICDYYTDFNKTIVCKTC FT EIQYCTTCANQLGIEVEKTYKKSREEELYDELRKTVVNLDLRLTIVEHKLEMNKLQEQF FT DSLQLSKEPSSSETIKALAMQAKESNFIKTNINRTAGCYVEVKLTFLNNSKITTALIDS FT GSTHNIICPLLVPEIWVKSLNLDIVMTTIDNSKYSLNRGLHDDVKIQFKEVDESFGIKY FT SLGQTYVAPKPTGTFIIGHRFMTSEHGSITIHKDYVTIQKTTGIYPTARHELKSEFARK FT HGGQRPLFSNIPETYNKIPKLYGYKSEIEDKNLLTLIKELEYLGYIGDDITKNKTNWVC FT DFKIINPDINITCNTIPYTPADKEVFEKQIKELLDNKLIRKASPTCRHRTAAFVVRNHS FT EEVAQKPRIVYNYKRLNDNMVTDPFNIPHKISMINLLQRARIFSKFDLKAGFHHMKLKE FT DFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDILIASSNE FT QEHIKHLKLFFTRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVEKIKKFD FT KSKLSTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKSGQRTFNKEDWNIIFKIER FT EVDKIKPLSRPEESDYIIIETDASEEGWGAVLICKPDKYASKDTEKIAGYASGNFGEKK FT TWTSLDYEIEAINEALNKFQIYLDRDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDN FT LLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNTASIIESSDSRSSTIESSDSQS FT SIKESLDSRTPTKESSDSSCRIKLHPLSSRQKVKGE" FT CDS <6047..7213 FT /codon_start=1 FT /product="P46" FT /note="ORFIV" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:J7K2M2" FT /protein_id="AFQ62093.1" FT /translation="INKECSYSIHHLGKNRVPIYKQGNLFHSEFTGRLSHLSNGLIDHL FT FTFSDNTERVRKLHLISEHIYNKEFEIQTYSLECEKLREQVSHLKNTIETQKQQIREMR FT DKIEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIYHHIKRLARESYYSHLNKLQKDM FT EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQMTKGLLEKN FT SEDEAGRYILTSGFVSDLYAHGFIKQINFTNKLPEGIPLVIREKIMQYKFPGANTILIE FT KEIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPITPEEFGIEYYSWEQIYE FT DDEADVVYQSISTRISKVVREYAWPCDDSDIMSCTTSMEEEYAHRLEA" XX SQ Sequence 7931 BP; 3220 A; 1269 C; 1430 G; 2012 T; 0 other; tggtatcaga gcaatgttcg aactttaagg gaaattttga tacaaactta tacatacatt 60 tacatatgtt ctgaagagga atcttatttt ctcaaatatt gagtcacgtc ttgaaaaact 120 tggatttcta gatttagcaa tttggggatc accaaaaaca caaaaatata gtctatctac 180 tgaaaatata gctttttatt gttactttca taagtctgaa aacacatcca ctactggaca 240 taatcacacc tttcattctg ataataagca acttaatact attgtagatc taatagtaaa 300 acacgcagaa aaaactaaaa atattaagga agaactagat aactatagta agttactaga 360 aaagatatta gaactaaaac ccactaagaa gcaaatagaa aaacttttgg aaaaccaaaa 420 cactataaac cagaactttg attatatcaa agagcaaaac tctcagattg aaaaatcttt 480 gagaaaaact aataaattag aagattctat aaataccttg cttgtggaaa tacagcaagc 540 tagacctaaa gaagtagaac ttcgtaccct taaaatagca gaacaaaact ctaaagctat 600 agaaaaattt gaaaaagaaa tacaagatct aagagaaatc ttagaatatc ttaagcacca 660 atctacatga gtgctgatta tcctaccttt aaggaagcct tagaaaagtt taaggattta 720 gagtctgaaa cagcaaacaa agataaattt ggctgggttt ttactcttca agggataaag 780 acaacagcag acgtaaatct agcatctaaa ggactagtac aactttacgc tttacaagaa 840 atcgataaga aaataaatca tttatctgca caagtcggca agatacctac aactagtggt 900 agcagtagtt cagcaggagc catagtacct gcaggaagta atacccaagg tcagtataaa 960 gcaccaccta agaaaggaat taaaaggaag tacccaggat gagtcttaga ccgtttagcg 1020 gtacctctag aactctaact caagattcag ctagtgaatc taacattaaa aaaggaaaat 1080 cttcaacaaa aagagaatta atagaagaaa tagatgttgc taaagaaata gaaaactttg 1140 attggaataa actatctggt ataaaatcta ataaacttta tgagaaaaat tggcaagaaa 1200 aagccaaatt aaaacaacaa tcaataatct ctgcttataa agaagaagct attagtgtca 1260 caactaatgc tttcatcact tcattatttc ctaatgaagt tataaaaaat gttaagaatc 1320 aaggaaaact ttattatcat ataggcatga tggccatagg aattaaagga ttacatagaa 1380 agaaaatagg tactaaagta atggtaatgt tttatgatga tagctttgga aaagccaaag 1440 aagctagtat aggatcaata gaaatggata tgaatgcagg ttgtggagta ttttactctt 1500 gccctgattt tgccaaatat ataaaagacc tatcccacct taagatagga attcagacct 1560 taggatatga aaattatgaa ggaaaaaatc tttccatagc cataaaaact ataggaagac 1620 taacaacaaa catccaggct agatataaaa tgaatgttaa aaatatagta gaacaaatat 1680 catcccaagg aataactatg gtagcaccca tggaaataga ttcatcacac ttagatggga 1740 atgaatggaa tttaagtaaa tttatgattc aggaaggaac aagtagagtt cctagcaaag 1800 ccttaatata tcagaatctg catggaggag aatcacttag attttcaaac tacacacaaa 1860 ccaaaatgca tgatccaaca gaaataaatt ctgatgaaga tgaagattta aaaattctag 1920 gagaacaatt aaatgccaaa atggcaaccc ttcaagaaga aaccctagaa caaaaattag 1980 aacgcataaa agaagaaaag aaacaactac tagtaaaact agaagccaaa aagaaggaaa 2040 tagaattaaa atccttaaaa atggcggtca tagaagatga ctttaaccca aacaacgaat 2100 atctagatga ctcatattct gaattagaag atttagaatt cgaacaatta ggattaactg 2160 gttgggaaga tctagaccaa gaaagtctag aaacagaaga agtcactgaa tgggaaaacc 2220 caaaccaagt cctaactaga gaaataaaag cctttaaatc agtatctgaa caaatagaag 2280 atatatttgg agaattatta aaagaacatg gaaattatga catggcccta aaaaatcttg 2340 aagaaagata tgatttaaga aacttagaag gagccaaaaa cctagaagaa atagctaaag 2400 catccacatc aaaaatgatg gatgtaaaac cagtaaaaag accaaaagaa gaacaaacag 2460 catatgagga tgatatgaga gatgattgga ggagaaaaga attaacagcc aatccagaag 2520 tatcctcaaa agatagaaat tttgaaagaa taggaggatc atataagaaa aacttttacc 2580 ccagtaaaag tgaaatccta aacctagacc atgtaccccc acaattctac tatgaccaaa 2640 tcataacttg ggaaggaata gtaaaaaacg aatgggaagc aaggaaaaag gatggtatgg 2700 acatgtggtc ctggatggat ggaagaataa caggaatggt tttatatcta atacaagatt 2760 ggatatctaa aaaccaagcc gcttataatg atataaagtc tcgaggagat agaccagaaa 2820 atttcgtaaa aatggttaaa gatagattct taatagaaga tcctacagac gagcgaagaa 2880 cagccttaca aagactagct ctaagagaat tagaagcttt aaattgtgag gatccagtta 2940 aaattcagcc atttatggca gaatatctta agaaagctgc cgaagctaaa aaaggatttg 3000 atgtcatata tgtcgaaaga ctatttgata gacttcctga ggcagtagga aaactaataa 3060 aaaaggaatt tctagatgca ggaaattcat atgaagcagg tataggagta gctgtttcat 3120 acatatctac atggatgaga ttaaaatgca taaaagaaac agaagctaaa acacaaaaga 3180 aagcatcatt agcattctgt cgatccatat atactatagg agattataag aaaagaaaaa 3240 cattaaaacg tgttacaaat tataatcgaa ataaaagaaa aaattatgtt agaaaaccta 3300 atataaaaag aaagtgtagg tgttatattt gccaggatga aaaccaccta gcaaacagat 3360 gtcctagaag atatgtcaat caagctagag ccagcatgat tgagggatta gaagaagata 3420 tagtttccat agcttcagat gatgaagact atgagaactt ctttgaaata atagaactag 3480 aagagttttt gagtaaatca ggacaacaag atcacgagca cacctgggaa acaggaggta 3540 agaaagaaaa aacttgtgat atttgtgatt attatactga tttcaataaa accatagtat 3600 gcaaaacatg tgaaatacaa tattgtacta cttgtgctaa tcaacttggt atagaagtag 3660 aaaaaacata taagaaatct agagaagaag aattatatga tgaattaaga aaaacagttg 3720 tcaacctaga tctaagattg acaatagttg aacataaact agaaatgaat aaattacaag 3780 aacaatttga ttccttgcaa ttatctaaag aacctagttc ttcagaaact ataaaagctt 3840 tagctatgca agcaaaagaa tcaaatttta taaaaacaaa tataaataga acagcaggat 3900 gttatgtaga ggttaaatta actttcttaa ataactcaaa aataaccact gcattaatag 3960 attcaggatc aacacataat attatctgtc ccttattggt accagaaata tgggtcaaaa 4020 gcctgaattt agatattgtt atgacaacaa tagataacag caaatatagc ttaaatcgag 4080 gattacatga tgacgtaaaa atacaattta aagaagtaga tgaaagtttt ggaataaaat 4140 acagtttggg acaaacatat gttgccccta aaccaactgg aactttcata attggacata 4200 gatttatgac cagtgaacat ggtagtatta caattcataa agattacgtt acaatccaaa 4260 aaactacggg aatctacccc acagctcgtc atgaactcaa atcagagttt gcgcgaaagc 4320 atggtggaca aagaccccta ttttcaaaca ttccagaaac ctacaacaaa attccaaaat 4380 tatatgggta taagagtgaa atagaagata aaaacctact tactcttata aaagagttag 4440 aatatttggg atatataggc gatgatataa caaaaaataa aaccaattgg gtatgtgact 4500 tcaaaatcat taacccagat ataaacatca cttgtaacac aatcccatat accccagcag 4560 acaaagaagt ctttgaaaaa caaatcaaag aactcttgga taataagtta ataaggaaag 4620 caagtcctac ttgcagacat agaactgcag cttttgtagt aagaaaccat tctgaggaag 4680 tagcacagaa gcctcgaata gtttataact ataaaagact gaatgataat atggttacag 4740 atcctttcaa tattccacat aaaatctcta tgataaattt attacagaga gctagaatat 4800 tctctaagtt cgacttgaaa gcagggtttc atcatatgaa acttaaagaa gattttaaag 4860 attggacaac ctttacttgt tctgaaggat tatatacttg gaatgtctgt ccatttggta 4920 tagctaacgc tccatgcgca tttcaaagat ttatgcagga atcctttgga gatttaaagt 4980 ttgcattatt atacatagat gacatcttaa ttgcatcaag taatgaacaa gagcatatta 5040 agcatcttaa gttattcttc actagagtta aagaagtagg ttgtgtcctt agtaagaaaa 5100 aatcaaaaat gttcctgaaa gaagtagaat acttaggagt ggagataaaa gaaggaaaga 5160 ttagcttaca accacacata gtggaaaaga taaagaagtt tgataaaagc aagttgagta 5220 ccctaaaggg attacaggca tatctaggcc tactcaatta tgctagagga tacattaaag 5280 acctatcaaa gttggtagga ccactatata aaaagactgg caagagtggc cagcgaacct 5340 ttaataaaga agattggaat ataattttta agatagaaag agaagttgat aagattaaac 5400 ctttaagtag accagaagaa tctgactaca taataataga gacagatgca tcagaagaag 5460 gatggggagc agtcttaatc tgcaaacctg ataaatatgc tagcaaagat actgaaaaga 5520 tagcaggtta tgcatcagga aactttggag aaaagaagac ctggactagt ttagattatg 5580 agatcgaagc tataaacgaa gcattaaata agtttcagat atatttagat agagacttta 5640 caatcagaac agattgtgag gcaatagtta aaggcataaa aacagaagat tacaaaaaga 5700 gatccaagac aagatggatt aaactaagag ataatcttct taaagatgga tacaagccta 5760 cctttgagca tatcaaagga aacaaaaact ttttgccaaa cttcctatcc cgcgagggag 5820 attttatttt aaaatgtctt caaaacacgg cttcaattat agaatcttcg gattcacgat 5880 cttcaactat agaatcttcg gattcacagt cttcaattaa agaatctttg gattcacgga 5940 ctccaactaa agaatcttcg gattcatctt gcaggataaa acttcatcct ctgtcctcaa 6000 ggcagaaggt gaaaggcgag taatcgctaa agttcttggc gtttccatca ataaagagtg 6060 ttcatactca atccaccatc tcggcaaaaa ccgagtcccc atatataaac agggaaacct 6120 gttccacagt gagtttactg gtaggcttag ccacttatca aacggtctta tagaccacct 6180 ttttacattt tctgataata ctgagcgagt taggaagctc caccttatat cagagcatat 6240 ctacaataaa gaatttgaaa tacagaccta tagtctcgag tgtgagaaac taagagagca 6300 ggttagccac ttaaaaaata ctattgaaac acaaaaacaa cagataagag agatgagaga 6360 taaaattgag ggactgagag agccactcaa aaagcccata tacacaaccc aggataagga 6420 agcacttcgt aacttctttt gcaaagaaag aagcatggag tacatttatc accacataaa 6480 gaggttagct cgagagagct attactcaca tctaaataaa cttcagaaag atatggaatt 6540 ccttagggga ttttacttat ctttcttaac aaatgtcaag tttctagttc tctttgagac 6600 tggactctgg acaactgaaa atattgaaag ccacttcttc aacaacagca gtctcttcat 6660 aacccaggaa gaaggagaaa ggcagatgac aaaaggattg ctagaaaaga acagtgaaga 6720 tgaagctgga agatacatcc tgacatcagg atttgtgtct gacctatacg ctcatggatt 6780 cataaaacag ataaacttca ctaataaact cccagaaggt attcctttag tcataagaga 6840 aaagataatg cagtataaat tcccaggagc aaatactatc ttaattgaga aagaaatccc 6900 aaaatgggac tttgatctca tgaagagaag cacaacattc aggactcaga tttacattct 6960 ccaaggacat agaaactttt atggattttc acccataaaa tcctatgaac ccattacacc 7020 cgaagagttc ggaatagaat attacagctg ggaacagatc tatgaagatg atgaagcaga 7080 cgtcgtctat caatcaataa gcaccagaat ctctaaagtt gtaagggagt atgcttggcc 7140 atgtgatgac agcgacatca tgtcctgcac tacctcaatg gaagaagaat atgcccacag 7200 gctggaggca taaagagatg ctccaaagat aaaagaacag agcatcaaag catcaataaa 7260 agaagactga agacataaag gaggaatcca ctttaaatta ttgtacctct acaattattg 7320 tacgaaatgt ctagactacc cctgaaccct cctatataag gagaagtagt ctgcatgtaa 7380 taggcatcga atccgaaata cacacaccca gagtagcaca cacttccacg agagcaagag 7440 aagagctgat cttctcactt cctctccaaa gaaggattag ctgcaatggc tcaggtcagt 7500 gagtagtcgt ctttaaggtt cctctaggaa cctctgtgta atatgtattg tattatgttt 7560 gtatcatcaa gaacttatcc gccgcatgaa taaagctcta tattgttgtt tacactcctt 7620 cgataagata tgaagccata ctcgtttctt aatcaatagt tctaagttaa ttctagcatg 7680 aaaaaggggg ctaaaggggg aagaagtacc gtcagggcgt gtgatgccaa gggaacaagt 7740 accatgaata ccctaataag tgctagaagg aagataagaa ctaacgaaac aaggaacatt 7800 tggtagctgg tttctgatta tcattatcaa gtagctcttc ctcatcacga aaactgcaaa 7860 ggcctgccaa ccctaggctg aaacagtgac taggccgagg aattgcgaaa agataggggg 7920 gtgcccgcat c 7931 //