Dbfetch
ID JX244172; SV 1; circular; genomic DNA; STD; VRL; 2730 BP. XX AC JX244172; XX DT 09-SEP-2012 (Rel. 114, Created) DT 09-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Mungbean yellow mosaic virus isolate VN1 segment DNA-A, complete sequence. XX KW . XX OS Mungbean yellow mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2730 RA Tsai W.S., Shih S.L., Rauf A., Safitri R., Hidayati N., Huyen B.T.T., RA Kenyon L.; RT "Mungbean yellow mosaic virus Vietnam isolate"; RL Unpublished. XX RN [2] RP 1-2730 RA Tsai W.S., Shih S.L., Rauf A., Safitri R., Hidayati N., Huyen B.T.T., RA Kenyon L.; RT ; RL Submitted (27-JUN-2012) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, 60 Yi-Min Liao, Shanhua, RL Tainan, Taiwan 74151, Taiwan, R.O.C. XX DR MD5; 0bae791c4199dbe9d46ff2ba89768a27. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.2 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Mungbean yellow mosaic virus" FT /segment="DNA-A" FT /host="mungbean" FT /isolate="VN1" FT /mol_type="genomic DNA" FT /country="Viet Nam" FT /db_xref="taxon:33726" FT gene 142..492 FT /gene="AV2" FT CDS 142..492 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:J7LL84" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:J7LL84" FT /protein_id="AFR11608.1" FT /translation="MWDPLVNDFPKSLHGFRCMLAIKYLQYIQENYPSNSLGYVYLTEL FT IQVLRIRKHAKAELRYRLLYPDVECAEEADLRHPAFLTCHCGKCPCQREKEEVDQPTHV FT EETEILSVIPLS" FT gene 302..1075 FT /gene="AV1" FT CDS 302..1075 FT /codon_start=1 FT /gene="AV1" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:J7LKJ9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:J7LKJ9" FT /protein_id="AFR11611.1" FT /translation="MPKRNYDTAFSTPMSNVRRRLTFDTPLSLPATAGSVPASARRRRW FT TNRPMWRKPRYYRLYRSPDVPRGCEGPCKVQSFEAKHDISHVGKVLCVTDVTRGNGITH FT RVGKRFCVKSIWVTGKIWMDENIKTKNHTNTVMFKLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDLRDRYQVVRKFQATVTGGQYASKEQAIVSKFYRVNNYVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSILN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:Q6WRU9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6WRU9" FT /protein_id="AFR11612.1" FT /translation="MDFRTGDNITAAQLRNGVFTWEVRNPLSFKIMQHRQIRPGSQMYV FT TQIRIMFNHGLKKALLMHKCFLDLKLYHYLTATSGMILSIFSRQLFRYLNNLGVISIGN FT VLQGASHILYEKLHHVEDVSFTHNVQYKLY" FT gene complement(1217..1624) FT /gene="AC2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /db_xref="GOA:Q6WRU8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6WRU8" FT /protein_id="AFR11613.1" FT /translation="MRNSTPSKNHFSPPSIKAQHKVAKKRAIRRSRIDLSCGCSYYIHI FT NCRNYGFSHRGQHHCSSTQEWRLYLGGAKSPLFQDHAAPSNSSRVPDVCDPNTDHVQPR FT VEESTADAQMLPGSEALPLFDGDFWDDIINF" FT gene complement(1524..2612) FT /gene="AC1" FT CDS complement(1524..2612) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="GOA:J7LL79" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7LL79" FT /protein_id="AFR11609.1" FT /translation="MPRLGRFAINAKNYFLTYPRCPLTKEDALVQLLALSTPVNKKFIR FT VCRELHEDGEPHLHVLLQFEGKFQTKNERFFDLVSSTRSAHYHPNVQAAKSASDVKSYM FT DKDGDVLDHGSFQVDGRSARGGKQSANDAYAEALNSGSKLQALNILREKAPKDYILQFH FT NLNCNLSRIFADEVPLYVSPYSLSAFDKVPSYISSWASENVRDPAARPERPISIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLNSKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTHIKGGIPTIFLCNPGPKSSYKEYLDEADNTALKLWASKNAEFYTLKEPL FT FSSVDQSATQGCQEASNSTLSN" FT gene complement(2162..2461) FT /gene="AC4" FT CDS complement(2162..2461) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:J7LD30" FT /protein_id="AFR11610.1" FT /translation="MKMENLISMFCFNSKESSKRRTKGSSTWFPQPDQHITIRTFRQLK FT AHQMLSHTWTKTETSLTMEVSKSMADQLEEVNSLPTTLMPRHSTVDPSYRPSIY" XX SQ Sequence 2730 BP; 734 A; 568 C; 619 G; 809 T; 0 other; acctgaggac cccgcgaccg gtgtacgctt ttgcttttgg acccacctta tctttagtcg 60 ttcaatgaca tgcgctcctc agcgcttaca taattcaaat ttgaattata aagagagctg 120 ctactttctt tattggcagc catgtgggat ccattggtga acgactttcc caaatcgttg 180 catggtttcc gttgtatgct tgccattaag tatttacaat acattcagga gaattatcct 240 tctaattctc ttggttacgt gtatttaaca gagttaatac aggttttacg tatacggaaa 300 catgccaaag cggaattacg ataccgcctt ctctaccccg atgtcgaatg tgcggaggag 360 gctgaccttc gacaccccgc tttccttacc tgccactgcg ggaagtgtcc ctgccagcgc 420 gagaaggagg aggtggacca accgacccat gtggaggaaa ccgagatatt atcggttata 480 ccgctctcct gatgtcccac gtggctgtga aggaccttgt aaggtccaat cattcgaggc 540 gaaacatgat atttcgcatg tcggcaaggt cttatgtgtc actgatgtga cacgaggcaa 600 tggcatcact cacagagttg ggaaacgatt ttgtgttaag tctatctggg ttacaggcaa 660 aatctggatg gatgagaaca tcaagacaaa gaatcacact aatactgtga tgttcaagtt 720 agtgcgtgac agacgtccat ttggcacgcc acaagacttt ggtcaagtgt tcaatatgta 780 tgacaatgaa cccagtactg ctactgtgaa gaacgatctt cgtgatcgtt atcaggtcgt 840 gcgtaagttt caagccacag ttactggtgg ccagtatgcg agcaaggagc aagccatagt 900 tagtaaattt tatcgtgtta acaattatgt tgtttacaac caccaagagg cagcgaagta 960 tgaaaaccat actgagaatg ctttgttatt gtatatggca tgtactcatg catcaaatcc 1020 tgtgtatgca acactaaaaa ttcggatcta tttttatgat tcgattttaa attaataaag 1080 tttgtattga acattatgcg taaagcttac atcctccaca tggtggagtt tttcatacag 1140 gatatgtgag gcgccttgta atacattgcc tatactaatg acgcctaaat tatttaaata 1200 tctaaataat tgtctactaa aaattgataa tatcatccca gaagtcgccg tcaaatagtg 1260 gtagagcttc agatccagga agcatttgtg catcagcagt gctttcttca acccgtggtt 1320 gaacatgatc cgtatttggg tcacatacat ctgggaccct ggacgaattt gacggtgctg 1380 catgatcttg aaagagaggg gatttcgcac ctcccaagta aagacgccat tcctgagttg 1440 agctgcagtg atgttgtccc cggtgcgaaa atccatagtt acggcagttg atatggatgt 1500 aataactaca cccacagctt aaatcaattc gagagcgtcg aattgctcgc ttcttggcaa 1560 ccttgtgttg cgctttgatc gacggaggag aaaagtggtt ctttgagggt gtagaattcc 1620 gcattctttg aagcccacaa tttgagtgct gtgttatcag cctcgtccaa gtactcttta 1680 taagaggatt ttggtccagg attgcataaa aagatggtgg ggataccacc tttaatatga 1740 gtgggcttcc cgtacttgac gttagattgc cagtctcttt gcgcgcccat gaattctttg 1800 aaatgtttca aataatgggg atcgacgtca tcaatgacgt tataccaagc atcgttggaa 1860 tagatcttac tgttaagatc caagtggccg caaagataat tgtgaggacc taacgcacgt 1920 gcccacattg ttttacccgt gcgactatcg ccttcaatca caatgctaat cggtctttcc 1980 ggccgcgcag cgggatctct aacattttct gaagcccatg aagaaatgta acttgggact 2040 ttgtcaaatg ctgataagct ataaggtgac acgtaaagtg gaacttcatc tgcaaaaatc 2100 cgtgacaaat tacaatttaa attatgaaat tgtaaaatat aatctttagg agccttctcc 2160 ctcagtatat tgagggcctg taacttggat ccactgttga gtgcctcggc ataagcgtcg 2220 ttggcagact gtttacctcc tctagctgat ctgccatcga cttggaaact tccatggtca 2280 aggacgtctc cgtctttgtc catgtatgac ttaacatctg atgcgctttt agctgcctga 2340 acgttcggat ggtaatgtgc tgatctggtt gaggaaacca ggtcgaagaa cctttcgttc 2400 ttcgtttgga actttccttc gaattgaagc agaacatgga gatgaggttc tccatcttca 2460 tgaagttcac gacagactcg gatgaacttc ttgttgacag gcgttgataa cgctaatagt 2520 tgtacaagag cgtcctcctt tgtaagagga caacggggat aagtgaggaa atagttcttt 2580 gcgtttatag caaaacgacc gagtctaggc atattttggc gtcgttttgt atcggtgtct 2640 ctccatttaa ctctatgtat cggtgtatcg gtgtcttatt tatatgtagg agagttacta 2700 aaaccctcag gggtcctcag caataatatt 2730 //