ID JX237870; SV 1; linear; genomic RNA; STD; VRL; 2718 BP. XX AC JX237870; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-936 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2718 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2718 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; ff3f4382cee4eb250f19e56cc9ea7e0c. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2718 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-936" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2499 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K843" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K843" FT /protein_id="AFQ91297.1" FT /translation="NYWTWLTECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHD FT EAKAYFTPLLGKYDKSRLNRAAFIKDISKYAKPIYIGEINYDIFEKAIERVIRTLRDVG FT MQQCTYVTDEEEIFKSLNLNAAVGALYTGKKKDYFANFSEEDKAEIVMKSCERLYNGQL FT GIWNGSLKAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVG FT ITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQML FT RNLYTEIVYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEI FT DNYCKMFANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTKEKSDLWFMSTRGI FT KCEGIYIPKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLMHEIRKFYAWLL FT EMQPFANLAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFRQFAKDLPGYIDDYNEDVF FT HQAGTVDAGTQGGGGNAGTQPPATGAAAQGGVQPPATGAAAQPPTTPGTQPPTGGATGG FT GGAQTGAGGTGAVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLL FT TYKPQQQDISNTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNING FT SWTMMDGDEQRVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRN FT LTDYSLARYAFDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTER FT HTAGDVSRNMHSLLGVQQHH" FT 3'UTR 2500..2718 XX SQ Sequence 2718 BP; 887 A; 562 C; 627 G; 642 T; 0 other; aactactgga cttggctcac ggaatgtata caagataatc tccaggtcgt tgcaaaatgt 60 cctggtcagc ttgtaaccaa gcatgtcgtt aaaggtccgt gtccacattt tcaactttac 120 ctgtctacac atgatgaagc caaagcatat tttactcctc tacttgggaa atatgataaa 180 agcagactaa acagagcggc cttcattaaa gacatctcga aatatgcaaa accgatttat 240 attggcgaaa taaattacga tatctttgaa aaagccattg aacgagtgat tcgcactctc 300 agagacgtgg gaatgcaaca atgcacgtat gtcacagatg aggaggaaat ttttaaatca 360 ctcaatctta atgcagcagt tggagcacta tacacaggga agaaaaagga ttacttcgca 420 aatttttcag aagaagacaa agcagaaata gttatgaaat cctgtgaacg tttatataat 480 ggacaactgg gcatttggaa tggatcgctc aaagccgaga tacgccccat agagaagacc 540 atgctgaaca aaactcgcac ttttacagca gcaccattgg aaactttact tggtggaaaa 600 gtgtgcgtcg atgatttcaa caaccaattt tattcacatc atctagaggg tccttggacg 660 gttggaataa caaaattcta tggaggatgg aatcgattgc tcgaaaagtt accagaagga 720 tggatttact gtgatgctga tggctcacaa tttgacagct ccctaacacc atatctcata 780 aatgctgtgc tacacattcg actacaattt atggaggagt gggaactagg agcacaaatg 840 ttacgaaatc tgtacactga gatcgtctac acaccaattg caacaccaga tggttccata 900 atcaagaaat ttaaaggaaa caacagtggc caaccatcaa ctgtagtcga caacacgcta 960 atggtcatct tagcattcaa ctatgcaatg ttgtcaagcg gaatacaaga caatgaaatc 1020 gacaactatt gcaagatgtt tgctaatgga gacgatctac tgttggcagt acatcccgat 1080 tatgaacata tactggatgg ctttcagacc cactttggaa accttggttt aaacttcgaa 1140 tttaattcac gaacgaagga aaaatcagat ctatggttta tgtcaacacg agggatcaaa 1200 tgtgagggta tctatatacc caaacttgaa aaagaaagaa tagttgcaat cttagagtgg 1260 gatagatcaa atctgcctga acaccgttta gaagcaatct gtgcagcaat ggtagaggca 1320 tggggctacc cagatctcat gcatgaaatc cgaaaatttt acgcatggct tttagaaatg 1380 caaccattcg caaacttagc taaggaaggt cttgcaccat atatcgcaga aacagcattg 1440 cgaaaccttt acttaggatc aggcataaag gaggaagaaa ttgagaagta tttcaggcaa 1500 ttcgctaagg atctccctgg gtacattgac gattacaacg aagatgtttt ccaccaagct 1560 ggaacagtgg atgcaggcac tcaaggagga ggtggaaacg ccggaactca gccgccagcc 1620 actggagcag cagctcaagg aggagttcaa ccaccagcaa ctggagcagc tgcacaacca 1680 cccacgactc caggtacaca accgcccaca ggaggagcta ctggtggagg tggcgcacaa 1740 acaggagctg gtggaactgg cgcagttacg ggaggtcaaa gagacaagga tgtagatgct 1800 ggtacgacag gcaaaatcac agtgccaaag cttaaagcca tgtcgaagaa gatgcgcttg 1860 ccaaaagcaa aaggaaaaga tgttttacat ttagacttcc tgctaacata caaaccccag 1920 caacaagata tatcgaacac aagagcaacc agagaggagt tcgatagatg gtatgaagcc 1980 ataaagaaag aatacgagat tgatgataca caaatgacag ttgttatgag tggtctgatg 2040 gtatggtgta tcgagaacgg ttgctcaccc aacataaacg gcagttggac aatgatggac 2100 ggagatgaac agagagtgtt tccacttaaa ccagtcattg aaaatgcatc tccaacattc 2160 cgccaaataa tgcaccattt tagtgatgca gctgaagcat acattgagta caggaactca 2220 acagagcggt atatgccaag atatggactt cagcgaaatc tcaccgacta tagcttagca 2280 cggtatgcgt ttgacttcta tgaaatgaat tcacggacac cagctagagc taaggaagcc 2340 cacatgcaga tgaaagccgc agcagttcgt ggttcaaaca cacgactgtt cggtctggac 2400 ggaaatgtcg gcgagaccca ggagaataca gagagacaca cagctggcga tgtcagtcgc 2460 aatatgcact ctctgttggg agtgcagcag caccactagt ctcctggaaa ccctgtttgc 2520 agtacctata atatgtacta atatatagtg tcttagtgag gttttacctc gtctttgcta 2580 ttttattacg tatgtattta aagcgtgagc cagtctgcag catacagggt tggacccagt 2640 gtgttctggt gtagcgtgta ctagcgtcga gccacgagac ggactgcact gggtgtggct 2700 ttgccacttg tgctgcga 2718 //