ID JX237869; SV 1; linear; genomic RNA; STD; VRL; 2709 BP. XX AC JX237869; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-131 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2709 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2709 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; 1af00a71aa27a3b203f977ee07c5d679. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2709 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-131" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2490 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K227" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K227" FT /protein_id="AFQ91296.1" FT /translation="DLLTECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAK FT AYFTPLLGKYDKSRLNRAAFIKDISKYAKPIYIGEINYDVFEKAIERVIRTLRDVGMQQ FT CTYVTDEEEIFKSLNLNAAVGALYTGKKKDYFADFSEEDKAEIVMRSCERLYNGQLGIW FT NGSLKAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITK FT FYGGWNRLLDKLPEGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQMLRNL FT YTEIVYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDDC FT CKMFANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTKEKSDLWFMSTRGIKCE FT GIYIPKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLVHEIRKFYAWLLEMQ FT PFANLAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFRQFAKDLPGYIDDYNEDVFHQA FT GTVDAGAQGGGGDAGTQPPATGAVAQGGAQPPTTGAAAQPPATQGSQPPTGGATGGGGA FT QTGAGETGAFTGGQKDKDVDAGTTCKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYK FT PQQQDISNTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGSWT FT MMDGDEQRVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTD FT YSLARYAFDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTA FT GDVSRNMHSLLGVQQHH" FT 3'UTR 2491..2709 XX SQ Sequence 2709 BP; 881 A; 557 C; 623 G; 648 T; 0 other; gacttgctca cggaatgtat acaagataat cttcaggtcg ttgcaaaatg tcctggccaa 60 cttgtgacca agcatgtcgt taaaggtcca tgtccacatt tccaactgta cctgtcaaca 120 catgatgaag ccaaagcata ttttactcct ttacttggga aatatgataa gagtagacta 180 aacagagcgg ccttcattaa agatatctcg aaatatgcaa aaccaattta tattggcgaa 240 ataaattacg atgtctttga aaaagccatt gaacgagtga ttcgcactct cagagacgtg 300 ggaatgcaac aatgcacgta tgtcacagat gaggaggaga tttttaaatc actcaatctt 360 aatgcagcag ttggagcact atacacaggg aagaaaaagg attacttcgc agatttttca 420 gaagaagaca aagcagaaat agttatgaga tcctgtgaac gcttatataa tggacaactg 480 ggcatttgga atggatcgct caaagccgag atacgtccca tagagaaaac catgctgaac 540 aagactcgca cttttacagc agcaccattg gaaactttac ttggtggaaa agtgtgcgtt 600 gatgatttca acaaccaatt ctattcacat catctagagg gtccttggac ggttggaatc 660 acaaaatttt atggaggatg gaaccgattg cttgataagt tgccagaagg atggatttac 720 tgtgatgctg atggttcgca atttgacagc tccctaacac catatctcat aaatgccgtg 780 ctacacattc gactacaatt tatggaggag tgggaactag gcgcacaaat gttacgaaat 840 ctgtacactg aaatcgtcta cacaccaatt gcaacaccag acggttccat aataaagaaa 900 tttaaaggaa acaacagtgg tcagccatca actgtagttg acaacacgct aatggtcatc 960 ttagcattca attatgcaat gttgtcaagc ggaatacaag acaatgaaat cgacgactgt 1020 tgcaaaatgt ttgctaatgg agatgatcta ctgttggcag tacatcccga ttatgaacat 1080 atactggatg gctttcagac ccattttgga aaccttggtt taaacttcga attcaattca 1140 cgaacgaagg aaaaatcaga tctgtggttt atgtcaacac gagggatcaa atgtgagggt 1200 atctatatac ccaaacttga aaaagaaaga atagttgcaa tcttagaatg ggatagatca 1260 aatctgcctg aacaccgttt agaagcaatc tgtgcagcaa tggtagaggc atggggctac 1320 ccagatctcg tgcatgaaat ccgaaaattt tatgcatggc ttttagaaat gcaaccattc 1380 gcaaacttag ctaaggaagg tcttgcacca tatatcgcag aaacagcatt gcgaaacctt 1440 tacttaggat caggcataaa agaggaagaa atcgagaagt atttcaggca attcgctaag 1500 gatctccctg ggtacattga cgattacaat gaagacgttt tccaccaagc tggaacagtc 1560 gatgcaggcg ctcaaggagg aggtggagac gccggaactc agccgccagc cactggagca 1620 gtagctcaag gaggagctca accaccaaca actggagcag ctgcgcaacc acccgcgact 1680 caaggttcac aaccgcccac aggaggagct actggtggag gtggtgcaca aacgggagct 1740 ggtgaaactg gggcatttac aggaggtcaa aaagacaagg atgtagatgc tggtacgacc 1800 tgcaaaatca cagtgccaaa acttaaagcc atgtctaaga agatgcgctt gccaaaagca 1860 aaaggaaaag acgttttaca tttagacttc ctgctaacat acaaacccca gcaacaagat 1920 atatcgaaca caagagcaac cagagaggag ttcgatagat ggtatgaagc cataaagaaa 1980 gaatacgaga tcgatgatac acaaatgaca gttgttatga gtggtctgat ggtatggtgt 2040 atcgagaacg gttgctcacc caacataaac ggcagttgga caatgatgga cggagatgaa 2100 cagagagtat ttccacttaa accagtcatc gaaaatgcat ctccaacatt ccgccaaata 2160 atgcatcatt ttagtgatgc agctgaagca tacattgagt acaggaactc aacagagcga 2220 tatatgccaa gatatggact tcagcgaaat ctcaccgact atagcttagc acggtatgcc 2280 tttgacttct atgaaatgaa ttcacgaaca ccagctagag ctaaggaagc ccacatgcag 2340 atgaaagccg cagcagttcg tggttcaaac acacgactgt tcggtctgga cggaaatgtc 2400 ggcgagaccc aggagaatac agagagacac acagctggcg atgtcagtcg caatatgcac 2460 tctctgttgg gagtgcagca gcaccactag tctcctggaa accctgtttg cagtacctat 2520 aatatgtact aatatatagt atctcagtga ggttttacct cgtctttgct attttattac 2580 gtatgtattt aaagcgtgag ccagtctgca gcatacaggg ttggacccag tatgttctgg 2640 tgtagcgtgt actagcgtcg agccacgaga tggactgcac tgggtgtggc tttgccactt 2700 gtgctgcga 2709 //