ID JX237868; SV 1; linear; genomic RNA; STD; VRL; 2709 BP. XX AC JX237868; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-130 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2709 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2709 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; 2683ae51e4725fa991b41cd45479a020. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2709 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-130" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2490 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K5E2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K5E2" FT /protein_id="AFQ91295.1" FT /translation="DWLTECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAK FT AYFTPLLGKYDKSRLNRAAFIKDISKYAKPIYIGEINYDVFEKAIERVIRTLRDVGMQQ FT CTYVTDEEEIFKSLNLNAAVGALYTGKKKDYFADFSEEDKAEIVMRSCERLYNGQLGIW FT NGSLKAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITK FT FYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQMLRNL FT YTEIVYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNC FT CKMFANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTQGLKCE FT GIYIPKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQ FT PFANLAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFKQFAKDLPGYLEDYNEEVFHQA FT GTVDAGAQGGGGNAGTQPPATGAVAQGGAQPPATGAAAQPPATQGSQPPTGGATGGGGA FT QTGAGETGAVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYK FT PQQQDISNTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGSWT FT MMDGDEQRVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTD FT YSLARYAFDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTA FT GDVSRNMHSLLGVQQHH" FT 3'UTR 2491..>2709 XX SQ Sequence 2709 BP; 864 A; 566 C; 641 G; 638 T; 0 other; gattggctca cggaatgtat acaagataat ctccaggtcg ttgcaaaatg tcctggccag 60 cttgtgacca agcatgtcgt taaaggtcca tgtccacatt tccaactgta tctgtcaaca 120 catgatgaag ccaaagcata ttttactcct ttacttggga aatatgataa gagcagactg 180 aacagggcgg ccttcattaa agatatctcg aagtatgcaa aaccaattta tattggcgaa 240 ataaattacg atgtctttga aaaagccatt gaacgagtga ttcgcactct aagagacgtg 300 ggtatgcaac aatgcacgta tgtcacagat gaggaagaga tttttaaatc actcaatctt 360 aatgcagcag ttggagcact atacacaggg aagaaaaagg attacttcgc agatttttca 420 gaagaagaca aagcagaaat agttatgaga tcctgtgaac gcttatataa tggacaactg 480 ggcatttgga atggatcgct caaagccgag atacgcccca tagagaagac catgctgaac 540 aaaacccgca cttttacagc agcaccattg gaaaccttac ttggtggaaa agtgtgcgtt 600 gatgatttca acaaccaatt ctattcacat catctagagg gtccttggac ggttggaatc 660 acaaaattct atggaggatg gaaccgactg ctcgagaagt tgccggaagg atggatttac 720 tgtgatgctg atggctcaca gtttgacagc tccctaacac catatctcat aaatgccgtg 780 ctacacattc gactacaatt tatggaggag tgggaactag gcgcacaaat gttacgaaat 840 ttgtacactg agatcgtata cacaccaatt gcaacaccag acggctccat aatcaagaaa 900 tttaaaggaa acaacagtgg tcaaccatca actgtagtcg acaacacgct aatggtcatc 960 ttagcattta attatgcaat gttgtcaagt ggaatacaag ataatgaaat cgacaactgt 1020 tgcaaaatgt ttgctaatgg agatgatcta ctgttggcag tacatcctga ttatgaacat 1080 atactggatg gctttcagac tcattttgga aaccttggtt taaactttga attcaattca 1140 cgaacgaggg aaaaatcgaa cttgtggttc atgtcaacac agggactcaa gtgtgagggc 1200 atttacatac caaaactcga aaaggaaaga atagtcgcca tactcgagtg ggatcgttca 1260 aatctacccg agcaccgttt agaagccatt tgtgccgcaa tggtcgaagc gtggggctat 1320 ccagatctca tacatgaaat tcggaaattt tatgcatggc ttctggaaat gcagccattt 1380 gcaaatctag ccaaagaggg tctagctcca tatattgcag aaacagcact tcgaaactta 1440 tatctaggtt cagggatcaa ggaagaggaa atcgaaaaat acttcaagca gttcgcgaag 1500 gatctccctg ggtatttaga ggattacaac gaagaagttt tccaccaagc tggaacagtc 1560 gatgcgggcg ctcaaggagg aggtggaaac gccggaactc agccgccagc cactggagca 1620 gtagctcaag gaggagctca accaccagca actggagcag ctgcgcaacc acccgcgact 1680 caaggttcac aaccgcccac aggaggagct actggtggag gtggtgcaca aacaggagct 1740 ggtgaaactg gcgcagttac aggaggccaa agagacaagg atgtagatgc tggtacgaca 1800 ggcaaaatca cagtgccaaa acttaaagcc atgtcgaaga agatgcgctt gccaaaagca 1860 aaaggaaaag atgttttaca tttggacttc ctgctaacgt acaaacccca gcaacaagat 1920 atatcgaaca caagagcaac cagagaggag ttcgatagat ggtacgaagc cataaagaaa 1980 gaatacgaga tcgatgatac acaaatgaca gttgttatga gtggtctgat ggtatggtgt 2040 atcgagaacg gttgctcacc caacataaac ggcagttgga caatgatgga cggagatgaa 2100 cagagagtgt ttccacttaa accagtcatc gaaaacgcat ctccaacatt ccgccaaata 2160 atgcatcatt ttagtgatgc agctgaagca tacattgagt acaggaactc aacagagcga 2220 tatatgccaa ggtatggact tcagcgaaat ctcaccgact atagcttagc acggtatgcc 2280 tttgacttct atgaaatgaa ttcacgaaca ccagctagag ctaaggaagc ccacatgcag 2340 atgaaagccg cagcagttcg tggttcaaac acacgactgt tcggtctgga cggaaatgtc 2400 ggcgagaccc aggagaatac agagagacac acagctggcg atgtcagtcg caatatgcac 2460 tctctgttgg gagtgcagca gcaccattag tctcctggaa accctgtttg cagtacctat 2520 aatatgtact aatatatagt atcttagtga ggttttacct cgtctttgct attttattac 2580 gtatgtattt aaagcgtgag ccagtctgca gcatacaggg ttggacccag tgtgttctgg 2640 tgtagcgtgt actagcgtcg agccacgaga cggactgcac tgggtgtggc tttgccactt 2700 gtgctgcga 2709 //