ID JX237867; SV 1; linear; genomic RNA; STD; VRL; 2614 BP. XX AC JX237867; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-914 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2614 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2614 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; 137577c97a0293a018b538b8f6825663. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2614 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-914" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2400 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K7C4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K7C4" FT /protein_id="AFQ91294.1" FT /translation="CPHFQLYLSTHDEAKAYFTPLLGKYDKSRLNRAAFIKDISKYAKP FT IYIGEINYDVFEKAIERVIRTLRDVGMQQCTYVTDEEEIFKSLNLNAAVGALYTGKKKD FT YFAEFSEEDKAEIVMRSCERLYNGQLGIWNGSLKAEIRPIEKTMLNKTRTFTAAPLETL FT LGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSL FT TPYLINAVLHIRLQFMEEWELGAQMLRNLYTEIVYTPIATPDGSIIKKFKGNNSGQPST FT VVDNTLMVILAFNYAMLSSGIQDNEIDNCCKMFANGDDLLLAVHPDYEHILDGFQTHFG FT NLGLNFEFNSRTREKSDLWFMSTQGLKCEGIYIPKLEKERIVAILEWDRSNLPEHRLEA FT ICAAMVEAWGYSDLIHEIRKFYAWLLEMQPFANLAKEGLAPYIAETALRNLYLGSGIKE FT EEIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVDAGAQGGGGNAGTQPPATGAAAQGGAQ FT PPATGAAAQPPATQGSQPPTGGVTGGGGAQTGAGETGSVTGGQRDKDVDAGTTGKITVP FT KLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATREEFDRWYEAIKKEYEID FT DTQMTVVMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPVIENASPTFRQIMHHF FT SDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMNSRTPARAKEAHMQMKA FT AAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH" FT 3'UTR 2401..>2614 XX SQ Sequence 2614 BP; 847 A; 533 C; 617 G; 617 T; 0 other; tgtccacatt tccaactgta cctgtcaaca catgatgaag ccaaagcata tttcactcct 60 ttacttggga aatatgataa gagcagatta aacagagcgg ctttcattaa agatatctcg 120 aaatatgcaa aaccaattta tattggcgaa ataaattacg atgtctttga aaaagctatt 180 gaacgagtga ttcgcactct tagagacgtg ggaatgcaac aatgcactta tgtcacagat 240 gaggaggaaa tttttaaatc actcaatctt aatgcagcag ttggagcatt atacacagga 300 aagaaaaagg attacttcgc agaattttca gaagaagata aagcagaaat agttatgaga 360 tcctgtgaac gcttatataa tggacaactg ggcatttgga atggatcgct caaagccgag 420 atacgcccca tagagaagac catgctgaac aagactcgca cttttacagc agcaccattg 480 gaaaccttac ttggtggaaa agtgtgcgtt gatgatttca acaaccaatt ctattcacat 540 catctagagg gtccttggac ggttggaatc acaaaattct atggaggatg gaaccgattg 600 ctcgagaagt taccagaagg atggatttac tgtgatgcag atggctcaca atttgacagc 660 tccctaacac catatctcat aaatgccgtg ctgcacattc gactacaatt catggaggaa 720 tgggaactag gcgcacaaat gttgcgaaat ctgtacactg agatcgtcta cacaccaatt 780 gcaacaccag atggttccat aattaagaaa tttaaaggaa acaacagtgg tcaaccatca 840 actgtagtcg acaacacgct aatggtcatc ttagcattca attatgcaat gttgtcaagt 900 ggaatacaag acaatgaaat cgacaattgt tgcaaaatgt ttgctaatgg agacgatcta 960 ctgttggcag tacatcccga ttatgaacac atactggatg gttttcaaac ccactttggg 1020 aaccttggtt taaatttcga attcaattca cgaacgaggg aaaaatcaga cttgtggttc 1080 atgtcgacac agggactcaa gtgtgagggc atttacatac caaaactcga aaaggaaaga 1140 atagtcgcca tactcgagtg ggaccgttca aatctacccg agcaccgttt agaagccatt 1200 tgtgcagcaa tggtcgaagc gtggggctat tcagatctaa tacatgaaat tcggaaattt 1260 tatgcgtggc ttctggaaat gcaaccattt gcaaatctag ccaaagaggg tttagctcca 1320 tatattgcag agacagcgct tcgtaacttg tatctaggtt cagggatcaa ggaagaggaa 1380 attgaaaaat actttaagca gttcgcgaag gacctccctg gatatttaga ggattacaac 1440 gaagaagttt tccaccaagc tggaacagtt gatgcaggcg ctcaaggagg aggtgggaac 1500 gccggaactc aaccgccagc cactggagca gcagctcaag gaggagcgca accaccagca 1560 actggagcag ctgcgcaacc acccgcgact caaggttcac aaccgcccac agggggagtt 1620 actggtggag gtggtgcaca aacaggagct ggtgaaactg gctcagttac aggaggccaa 1680 agagacaagg atgtagatgc tggcacgaca ggcaaaatca cagtgccaaa acttaaagcc 1740 atgtcaaaga agatgcgctt gccaaaagca aaagggaaag atgttttgca tctggacttt 1800 ctgttaacat acaaaccaca acaacaagat atatcaaaca caagagcaac cagagaggag 1860 tttgataggt ggtatgaagc cataaagaag gaatatgaaa tagatgacac acaaatgaca 1920 gttgtcatga gtggtctaat ggtatggtgt attgagaatg gttgctcacc aaacataaac 1980 ggaagttgga caatgatgga tggagatgaa caaagagtct tcccattaaa accagttatt 2040 gaaaacgcat ctccaacatt ccggcaaata atgcatcatt tcagtgatgc agctgaagca 2100 tatatcgagt atagaaactc tacagagcgg tacatgccac gatatggact tcagcgaaat 2160 ctcaccgact atagcttagc gcggtatgcc tttgactttt acgaaatgaa ttcaaggaca 2220 ccagctagag ctaaggaagc ccacatgcag atgaaggccg cagcagtccg tggctcaaac 2280 acacgattgt tcggtctgga cggaaatgtc ggcgagactc aggagaatac agagagacac 2340 acagctggcg atgttagtcg caatatgcac tctctgttgg gagtgcagca gcaccactag 2400 tctcctggaa accctgtttg cagtacctat agtatgtact aataatgtat gtcagtgagg 2460 ttttacctcg tctttactgt attacgtatg tacttaaagc gtgaaccagt ctgcaggaca 2520 cagggttgga cccagtgtct tctggtgtag cgtgtactag cgtcgagcca cgtgacggac 2580 agcactgggt gtggctttgc cattggtgct gcga 2614 //