ID JX237866; SV 1; linear; genomic RNA; STD; VRL; 2689 BP. XX AC JX237866; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-627 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2689 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2689 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; d9e155d3b19a338447cd1f818e2962f1. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-627" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2478 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K0P6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K0P6" FT /protein_id="AFQ91293.1" FT /translation="ECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAKAYFT FT PLLGKYDKSRLNRVAFIKDISKYAKPIYIGEINYDVFEKAIERVIRTLRDVGMQQCTYV FT TDEEEIFKSLNLNAAVGALYTGKKKDYFADFSEEDKAEIVMRSCERLYNGQLGIWNGSL FT KAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGG FT WNRLLEKLPEGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQMLRNLYTEI FT VYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNYCKMF FT ANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTRGLKCEGIYI FT PKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFAN FT LAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVD FT AGAQGGGGNAGTQPPATGAAAQGGAQPPANGAAAQPPAAQGSQPPTGGATGGGGAQTGA FT GETGSVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQ FT DISNTRATREEFDRWYEAIKKEYELDDTQMTVVMSGLMVWCIENGCSPNINGSWTMMDG FT DEQRVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLA FT RYAFDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVS FT RNMHSLLGVQQHH" FT 3'UTR 2479..>2689 XX SQ Sequence 2689 BP; 870 A; 557 C; 629 G; 633 T; 0 other; gaatgtatac aagataatct ccaggtcgtt gcaaaatgtc ctggccaact tgtgaccaag 60 catgtcgtta aaggtccatg tccacatttc caactgtacc tgtcaacgca tgatgaagcc 120 aaagcatatt ttactccttt gcttgggaag tatgataaga gcagactaaa cagagtggcc 180 ttcattaaag atatctcgaa atatgcaaaa ccaatttata ttggtgaaat aaattacgat 240 gtctttgaaa aagccattga acgagtaatt cgcactctca gagacgtggg aatgcaacaa 300 tgcacgtatg tcacagacga agaggagatt ttcaaatcac ttaatcttaa tgcagcagtt 360 ggagcactat acacagggaa gaaaaaggac tacttcgcag atttttcaga agaagataaa 420 gcagaaatag ttatgagatc ctgtgaacgc ttatataatg gacaactggg catttggaat 480 ggatcgctca aagccgagat acgccccata gagaagacca tgctgaacaa aactcgcact 540 tttacagcag cgccattgga aaccttactt ggtggaaaag tgtgcgtcga tgatttcaat 600 aaccaattct attcacatca tctagaaggt ccttggacgg ttggaattac aaaattctat 660 ggaggatgga accgattgct cgagaaactg ccagaaggat ggatttactg tgatgctgat 720 ggctcacaat ttgatagctc cctaacacca tatctcataa atgctgtgtt acacattcga 780 ctacaattta tggaggaatg ggaactaggc gcacaaatgt tacgaaatct gtacactgaa 840 atcgtctata caccaatcgc aacaccagac ggttccataa tcaagaaatt taaaggaaac 900 aacagtggtc agccatcaac cgtagtcgac aacacgctaa tggtcatctt agcattcaat 960 tatgcaatgt tgtcaagtgg aatacaagac aacgaaatcg acaactattg caaaatgttt 1020 gctaatggag acgatctact gttggcagta catcccgatt atgaacatat actggatggc 1080 tttcagactc actttggaaa ccttggttta aatttcgaat tcaattcacg aacgagggaa 1140 aaatcgaact tgtggtttat gtcaacacgg ggactcaagt gtgagggcat ttacatacca 1200 aaacttgaaa aggaaagaat agtcgccata ctcgagtggg atcgttcaaa tctacccgag 1260 caccgtttag aagccatttg tgcagcaatg gtcgaagcgt ggggctatcc agatctcata 1320 catgaaattc ggaaatttta tgcatggctt ttggaaatgc aaccatttgc aaacctagcc 1380 aaagagggtc tagctccata tattgcagaa acagcgcttc gtaacttgta tctaggttca 1440 ggtatcaagg aagaggaaat cgaaaagtac ttcaagcagt ttgcaaagga ccttcctgga 1500 tatttagagg attacaacga agaagttttc catcaagctg gaacagttga tgcaggcgct 1560 caaggaggag gtggaaatgc cggaactcag ccgccagcta ctggagcagc agctcaagga 1620 ggagctcaac cgccagcaaa tggagcagcc gcgcaaccac ccgcggctca aggttcacaa 1680 ccgcccacag ggggagctac tggtggaggt ggtgcacaaa caggagctgg tgaaactggc 1740 tcagttacag gaggtcaaag agacaaggat gtagatgctg gtacgacagg caaaatcaca 1800 gtaccgaagc ttaaagccat gtcgaagaag atgcgcttgc caaaagcaaa aggaaaagat 1860 gttttgcatc tggacttcct gctaacatac aaaccgcaac aacaagacat atcaaacaca 1920 agagcaacca gagaggagtt tgataggtgg tatgaagcca taaagaagga atatgaatta 1980 gatgacacac aaatgacagt cgtcatgagt ggtttaatgg tatggtgtat cgaaaatggt 2040 tgctcaccaa acataaatgg aagttggaca atgatggatg gagacgaaca aagagtcttc 2100 ccattaaaac cagttattga aaacgcatct ccaacgttcc gacaaataat gcatcatttc 2160 agtgatgcag ctgaagcata tatcgagtac agaaactcta cagagcgata catgccacga 2220 tacggacttc agcgaaatct caccgactac agcttagcgc ggtatgcctt tgacttttac 2280 gaaatgaatt caaggacacc agctagagct aaggaagccc acatgcagat gaaggccgca 2340 gcagtccgtg gttcaaacac acgattgttc ggtctggacg gaaatgtcgg cgagactcag 2400 gagaatacag agagacacac agctggcgac gtcagtcgca acatgcactc tctgttggga 2460 gtgcagcagc accactagtc tcctggaaac cctgtttgca gtacctatag tatgtactaa 2520 taatgtatgt cagtgaggtt ttacctcgtc tttactatat tatgtatgta cttaaagcgt 2580 gaaccagtct gcaggacaca gggttggacc cagtgtcttc tggtgtagcg tgtactagcg 2640 tcgagccacg tgacggacag cactgagtgt ggctttgcca ttggtgctg 2689 //