ID JX237865; SV 1; linear; genomic RNA; STD; VRL; 2719 BP. XX AC JX237865; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-345 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2719 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2719 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; 3b641590d0e239f44a3da399384ae9e2. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2719 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-345" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2505 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K813" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K813" FT /protein_id="AFQ91292.1" FT /translation="CKVTETWLTECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLST FT HDEAKAYFTPLLGKYDKSRLNRAAFIKDISKYAKPIYIGEINYDIFEKAIERVIRTLRD FT VGMQQCTYVTDEEEIFKSLNLNAAVGALYTGKKKDYFADFSEEDKAEIVMRSCERLYNG FT QLGIWNGSLKAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWT FT VGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQ FT MLRNLYTEIVYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDN FT EIDNCCRMFANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTKEKSNLWFMSTQ FT GIKCEGIYIPKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYSDLIHEIRKFYAW FT LLEMQPFANLAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFKQFAKDLPGYLEDYNEE FT VFHQAGTVDAGAQGGGGNAGTQPPATGAAAQGGAQPPATGAAAQPPATQGSQPPTGGAT FT GGGGAQTGAGETGSVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDF FT LLTYKPQQQDISNTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNI FT NGNWTMMDGDEQRAFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQ FT RNLTDYSLARYAFDFYEITSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENT FT ERHTAGDVSRNMHSLLGVQQHH" FT 3'UTR 2506..>2719 XX SQ Sequence 2719 BP; 884 A; 564 C; 634 G; 637 T; 0 other; tgtaaagtca ctgagacttg gctcacggaa tgtatacaag ataatctcca ggtcgttgca 60 aaatgtcctg gccagcttgt gaccaagcat gttgttaaag gtccatgtcc acatttccaa 120 ctgtacctgt caacacatga tgaagccaaa gcatatttta ctcctttact tggaaaatat 180 gataagagta gactaaacag agcggccttc attaaagata tctcgaaata tgcaaaacca 240 atttatattg gcgaaataaa ttacgatatc tttgaaaaag ccattgaacg agtgattcgc 300 actctcagag acgtgggaat gcaacaatgc acgtatgtca cagatgagga ggagattttt 360 aaatcactca atcttaatgc agcagttgga gcactataca cagggaagaa aaaggattac 420 ttcgcagatt tttcagaaga agacaaagca gaaatagtta tgagatcctg tgaacgctta 480 tataatggac aactgggcat ttggaatgga tcgctcaaag ccgagatacg gcccatagag 540 aaaaccatgt tgaacaagac tcgcactttt acagcagcac cattggaaac attacttggt 600 ggaaaagtgt gcgttgacga tttcaacaac caattttatt cacatcatct agagggtcct 660 tggacagttg gaatcacaaa attctatgga ggatggaacc gattgctcga gaaattgcca 720 gaaggatgga tttactgtga tgcagatggt tcacaatttg acagttcctt aacaccatat 780 ctcataaatg ccgtgctaca cattcgacta caatttatgg aggagtggga actaggcgca 840 caaatgttac gaaatctgta cactgaaatc gtctacacac caattgcaac accagacggt 900 tccattatca agaaatttaa aggaaacaac agtggtcaac catcaactgt agtcgacaac 960 acgctaatgg tcatcctagc atttaattat gcaatgttgt caagtggaat tcaagacaat 1020 gaaatcgaca attgttgcag aatgtttgct aatggagatg atctgctgtt ggcagtacac 1080 cccgattatg aacatatact ggatggcttt cagacccact tcggaaacct tggtttgaat 1140 tttgaattca attcacgaac gaaggaaaaa tcgaacttgt ggttcatgtc aacacaggga 1200 atcaagtgtg agggcattta cataccaaaa ctcgaaaagg aaagaatagt cgctatactc 1260 gagtgggatc gttcaaatct acctgagcac cgtttagaag ccatttgtgc agcaatggtt 1320 gaagcgtggg gatattcaga tctcatacat gaaattcgga aattctatgc atggcttctg 1380 gaaatgcaac catttgcaaa tctagccaaa gagggtctag ctccatatat cgcagaaaca 1440 gcgcttcgca acttgtatct aggttcaggg atcaaggaag aggaaatcga aaaatacttc 1500 aaacagtttg caaaggacct ccctgggtat ttagaggatt acaacgaaga agttttccac 1560 caagctggaa cagtcgatgc aggtgctcaa ggaggaggtg gaaacgccgg aactcagccg 1620 ccagccactg gagcagcagc tcaaggagga gctcaaccac cagcaactgg agcagccgcg 1680 caaccacccg cgactcaagg ttcacaaccg cccacagggg gagctactgg tggaggtggt 1740 gcacaaacag gagctggcga aactggctca gttacaggag gccaaagaga caaggatgta 1800 gatgctggca cgacaggcaa aatcacagtg ccaaaactta aagccatgtc gaagaagatg 1860 cgcttgccaa aagcaaaagg aaaagatgtt ttgcatctgg actttctgtt aacatacaaa 1920 ccgcaacaac aagacatatc aaacacaaga gcaaccagag aggagtttga taggtggtat 1980 gaagccataa agaaggaata tgaaatagac gacacacaaa tgacagttgt catgagtggt 2040 ctaatggtat ggtgtattga gaatggttgc tcaccaaaca taaacggaaa ttggacaatg 2100 atggatgggg atgaacaaag agccttccca ttaaaaccag tcattgaaaa cgcatctcca 2160 acattccggc aaataatgca tcatttcagt gatgcagctg aagcgtatat cgaatataga 2220 aactctacag agcgatacat gccacgatat ggacttcagc gaaatctcac cgactatagc 2280 ttagcgcggt atgcctttga cttttacgaa ataacttcaa ggacaccagc tagagctaaa 2340 gaagcccaca tgcagatgaa ggccgcagca gtccgtggtt caaacacacg attgttcggt 2400 ctggacggaa atgtcggcga gacccaggag aatacagaga gacacacagc tggcgatgtc 2460 agtcgcaaca tgcactctct gttgggagtg cagcagcacc actagtctcc tggaaaccct 2520 gtttgcagta cctatagtat gtactaataa cgtatgtcag tgaggtttta cctcgtcttt 2580 actatattac gtatgtactt aaagcgtgaa ccagtctgca ggatacaggg ttggacccag 2640 tgtcttctgg tgtagcgtgt actagcgtcg agccacgtga cggacagcac tgggtgtggc 2700 tttgccattg gtgctgcga 2719 //