ID JX237864; SV 1; linear; genomic RNA; STD; VRL; 2626 BP. XX AC JX237864; XX DT 05-SEP-2012 (Rel. 114, Created) DT 05-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate ARG-129 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2626 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic RT Variability; Implications for the Design of a Resistance Gene Mediated by RT RNA Silencing"; RL Unpublished. XX RN [2] RP 1-2626 RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.; RT ; RL Submitted (25-JUN-2012) to the INSDC. RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia RL Santa Rosa, Salta 4531, Argentina XX DR MD5; 871fbb6bd2735b6e4118005216949095. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2626 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="ARG-129" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="2008" FT /db_xref="taxon:12224" FT CDS <1..2400 FT /codon_start=1 FT /product="polyprotein" FT /note="contains coat protein" FT /db_xref="GOA:J7K202" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:J7K202" FT /protein_id="AFQ91291.1" FT /translation="CPHFQLYLSTHDEAKAYFTPLLGKYDKSRLNRAAFIKDISKYAKP FT IYIGEINYDVFEKAIERVIRTLRDVGMQQCTYVTDEEEIFKSLNLNAAVGALYTGKKKD FT YFAEFSEEDKAEIVMRSCERLYNGQLGIWNGSLKAEIRPIEKTMLNKTRTFTAAPLETL FT LGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSL FT TPYLINAVLHIRLQFMEEWELGAQMLRNLYTEIVYTPIATPDGSIIKKFKGNNSGQPST FT VVDNTLMVILAFNYAMLSSGIQDNEIDNCCKMFANGDDLLLAVHPDYEHILDGFQTHFG FT NLGLNFEFNSRTREKSDLWFMSTQGLKCEDIYIPKLEKERIVAILEWDRSNLPEHRLEA FT ICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAKEGLAPYIAETALRNLYLGSGIKE FT EEIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVDAGAQGGGGNAGTQPPANGAAAQGGAQ FT PPATGVAAQPPATQGSQPPTGGATGGGGAQTGAGETGSVTGGQRDKDVDAGTTGKITVP FT KLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATREEFDRWYEAIKKEYEID FT DTQMTVVMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPVIENASPTFRQIMHHF FT SDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMNSRTPARAKEAHMQMKA FT AAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH" FT 3'UTR 2401..>2626 XX SQ Sequence 2626 BP; 845 A; 544 C; 620 G; 617 T; 0 other; tgtccacatt tccaactgta cctgtcaaca catgatgaag ccaaagcata tttcactcct 60 ttacttggga aatatgataa gagcagatta aacagagcgg ctttcattaa agatatctcg 120 aaatatgcaa aaccaattta tattggcgaa ataaattacg atgtctttga aaaagctatt 180 gaacgagtga ttcgcactct cagagacgtg ggaatgcaac aatgcactta tgtcacagat 240 gaggaggaga tttttaaatc actcaatctc aatgcagcag ttggagcact atacacagga 300 aagaaaaagg attacttcgc agaattttca gaagaagata aagcagaaat agttatgaga 360 tcctgtgaac gcttatataa tggacaactg ggcatttgga atggatcgct caaagccgag 420 atacgcccca tagagaagac catgctgaac aagactcgta cttttacagc agcaccattg 480 gaaaccttac ttggtggaaa agtgtgcgtt gatgatttca acaaccaatt ctattcacat 540 catctagagg gtccttggac ggttggaatc acaaaattct atggaggatg gaaccgattg 600 ctcgagaagt tgccagaagg ttggatttac tgcgatgctg atggctcaca atttgacagc 660 tccctaacac catatctcat aaatgccgtg ctacacattc gactacaatt catggaggaa 720 tgggaactag gcgcacaaat gctacgaaat ctgtatactg agatcgtcta tacaccaatt 780 gcaacaccag atggttccat aatcaagaaa tttaaaggaa acaacagtgg tcaaccatca 840 actgtagtcg acaacacgct aatggtcatc ttagcattca attatgcaat gttgtcaagt 900 ggaatacaag acaatgaaat cgacaactgt tgcaaaatgt ttgctaatgg agacgattta 960 ctgttggcag tacatcccga ttatgaacat atactggatg gctttcagac ccactttgga 1020 aaccttggtt taaattttga atttaattca cggacgaggg aaaaatcgga cttgtggttc 1080 atgtcaacac agggactcaa gtgtgaggac atttacatac caaaactcga aaaggaaaga 1140 atagtcgcca tactcgagtg ggatcgttca aatctacccg agcaccgttt agaagccatt 1200 tgtgcagcaa tggtcgaagc gtggggctat ccagacctca tacatgaaat tcggaaattt 1260 tatgcatggc ttctggaaat gcaaccattt gcaaatttag ccaaagaggg tttagctcca 1320 tatatcgcgg aaacggcgct tcgtaacttg tatctaggtt cagggatcaa ggaagaggaa 1380 atcgaaaaat acttcaagca gtttgcaaag gacctccctg ggtatttaga ggattacaac 1440 gaagaagttt tccaccaagc tggaacagtc gatgcaggcg ctcaaggagg aggtggcaac 1500 gccggaactc agccgccagc caatggagca gcagctcaag gaggagccca accaccagca 1560 actggagtag ccgcgcaacc acccgcaact caaggttcac aaccacccac agggggagct 1620 actggtggag gtggtgcaca aacaggagct ggtgaaactg gctcagttac aggaggccaa 1680 agagacaagg atgtagacgc tggtacgaca ggcaaaatca cagtgccaaa acttaaagcc 1740 atgtcgaaga agatgcgctt gccgaaagca aaaggaaaag atgttttgca tctggacttt 1800 ctgttaacat acaaaccgca acaacaagac atatcaaaca caagagcaac cagagaggag 1860 tttgataggt ggtatgaagc cataaagaag gaatatgaaa tagatgatac acaaatgaca 1920 gttgtcatga gtggtctaat ggtatggtgt attgagaatg gttgctcacc aaacataaac 1980 ggaagttgga caatgatgga tggagatgaa caaagagtct tcccattaaa accagttatt 2040 gaaaacgcat ctccaacatt ccggcaaata atgcatcatt tcagtgatgc agctgaagca 2100 tatatcgagt atagaaactc tacagagcgg tacatgccac gatatggact tcagcgaaat 2160 ctcaccgact acagcttagc gcggtatgcc ttcgactttt acgagatgaa ttcaaggaca 2220 ccagctagag ctaaggaagc ccacatgcag atgaaggccg cagcagttcg tggctcaaac 2280 acacgattgt tcggtctgga cggaaatgtc ggcgagactc aggagaatac agagagacac 2340 acagctggcg atgttagtcg caatatgcac tctctgttgg gagtgcagca gcaccactag 2400 tctcctggaa accctgtttg cagtacctat agtatgtact aataatgtat gtcagtgagg 2460 ttttacctcg tctttactat attacgtatg tacttaaagc gtgaaccagt ctgcaggaca 2520 cagggttgga cccagtgtct tctggtgtag cgtgtactag cgtcgagcca cgtgacggac 2580 agcactgggt gtggctttgc cattggtgct gcgagctcct tggtga 2626 //