ID JX220899; SV 2; linear; genomic RNA; STD; VRL; 7612 BP. XX AC JX220899; XX DT 23-JAN-2013 (Rel. 115, Created) DT 12-FEB-2013 (Rel. 115, Last updated, Version 2) XX DE Grapevine leafroll-associated virus 3 isolate NZ2 HSP70-like protein gene, DE partial cds; and HSP90-like protein, coat protein, divergent coat protein, DE 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 DE kDa protein genes, complete cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-7612 RX DOI; 10.1016/j.jviromet.2012.12.018. RX PUBMED; 23313884. RA Chooi K.M., Cohen D., Pearson M.N.; RT "Generic and sequence-variant specific molecular assays for the detection RT of the highly variable Grapevine leafroll-associated virus 3"; RL J. Virol. Methods 189(1):20-29(2013). XX RN [2] RP 1-7612 RA Chooi K.M., Cohen D., Pearson M.N.; RT ; RL Submitted (24-JUN-2012) to the INSDC. RL School of Biological Sciences, University of Auckland, 3A Symonds Street, RL Auckland 1010, New Zealand XX RN [3] RC Sequence update by submitter RP 1-7612 RA Chooi K.M., Cohen D., Pearson M.N.; RT ; RL Submitted (05-FEB-2013) to the INSDC. RL School of Biological Sciences, University of Auckland, 3A Symonds Street, RL Auckland 1010, New Zealand XX DR MD5; 320cbae0f5e027c80f944b69019ba50b. XX CC On Feb 7, 2013 this sequence version replaced gi:443267191. XX FH Key Location/Qualifiers FH FT source 1..7612 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera cv. Pinot noir" FT /isolate="NZ2" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2009" FT /db_xref="taxon:55951" FT CDS <1..1418 FT /codon_start=3 FT /product="HSP70-like protein" FT /note="heat shock protein 70-like protein; ORF4" FT /db_xref="GOA:L7WFN6" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:L7WFN6" FT /protein_id="AGC79348.2" FT /translation="IERYVEKLKPTYTVKIDSGGALLMGGLGSGPDVLLRVVDVICLFL FT KALVLECERQTSSTITAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALFS FT LAKSKVEDLLLAVFDFGGGTFDVSFVKKKGDVLCVIFSVGDNFLGGRDIDRAVVEVVKT FT KIKGRLSDAKLGIFVSSIKEELSNNSAITQHLIPVEGGVEVVDLTSEELDAIVAPFSER FT AIEVFKTGLSNFYPDPVIAVMTGGSSALSRVRKDVAALPQISKVVYDSNDFRCSVACGA FT KVYCDILAGSSSLRLVDTLTNTLTDEVSDFTPVVIFPKGSPIPCTYTHTYDVSGGDVIY FT GIFEGENNRAFLNEPTFRGISKHRGEPKEKDVAQFSLSTDGTVSLVVNGVEVKNEYLVP FT GTTDVLNSLTYKSGRDELEAKAIPEYLTTLNVLHAKTLTRKNLDVRDKVFSSLKIEENF FT VKSKVDPLAILDG" FT CDS 1411..2862 FT /codon_start=1 FT /product="HSP90-like protein" FT /note="ORF5" FT /db_xref="GOA:L8A5G9" FT /db_xref="UniProtKB/TrEMBL:L8A5G9" FT /protein_id="AGE45897.1" FT /translation="MDKYCYITGILDPSAARSEVFKVVNKEYIGPSGRSFSKGSSKYTV FT LWDGNVARVSGFSSTVQATVDAFAYFLLKGGLTTTLSHPGNCERYIRTSADMTNLFKAM FT QRGRIYMSRSIDSNLPYEDRKKIEEASRRLSPSDAAFCKAVSVQIGRFVDPTRQLQAVD FT VPLHVVKLRKREGIAQASLPKVVSAFVDFFTDLQELLSDEVLKARTDTVTAYATETMAF FT MVKMLPLTSKEQWLHDLLGYLLVRRRPVNFSYDSRVSWVYDVVATVKDALKLFFNKDMS FT GGIKELKPYVPIESFDPFHELSSYFSRLSYQLSAGKGAKICPELAEKLVRRLMEDNYRL FT RLTPVVSLIIILIYYSIYGTNTTRIVRRPCRLKVRLRGKVEEVSLQGVEDRAYKLSQKR FT GVNAQRIVCRYYSDLTCLARRHYDIHRNNWKTLNYVDGRLAYDTADCITSRVRNMIDSA FT DHARIIQYIKTNDNPVTGTAMPHQQ" FT CDS 2957..3898 FT /codon_start=1 FT /product="coat protein" FT /note="ORF6" FT /db_xref="GOA:L8AAL6" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:L8AAL6" FT /protein_id="AGE45898.1" FT /translation="MAFDLKLGQIYEVVPENNLRVRVGDAAQGKFSKPEFLKYVKDGTQ FT AELTTVPVVPDKYVFATAALATAAPAPARPAPAPVVETPETDVGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKIINEPGKVSVEVAMKINAALMELCKKVMGSDD FT ATTKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYANWVFDCIKQAAASTGYE FT NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPSYDLFNNDAI FT LAWNLARQQAFRNKNVTADSTLHNVFQLLQKK" FT CDS 3961..5394 FT /codon_start=1 FT /product="divergent coat protein" FT /note="ORF7" FT /db_xref="GOA:L8A9R3" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:L8A9R3" FT /protein_id="AGE45899.1" FT /translation="MGAYTHVDFNESRLLEDKKAYLTFKSANDAPPDPPTYTRTDGYTR FT AYLIERADFPEIGNLTVTISIASNKLASGLMGSDAVLSSFILMNSKGDYFECGVCHNKP FT YLGREVVFSKRYIGGRGTEITTGKNYASNNWNENSYVLKVDINNGLAQTTVNTSYTQTD FT VSGLPKDWNRIYKVTKIVSADTNLYPGCFSEAKLNVMLIRAVLISTIDLRFRKVLLKPL FT RKSFLARPQDANSIDDSLLIESASTTIATTDASNVPDQLNTVELTSDIAELINTRGQGR FT ISFPDSILSINEKDIYDERYLPITEALQINARLRRLVISKGGSQSPKDMGNFIVAMIQL FT FVLYSTVKNISVKEGYRVETELGGKRVYISYSEVREAILGGTLDASPTNTIRSFMRYFT FT HTAITLLIEKKIQPAYTALAKHGVPKKFTPYCFDFALLDNRYYPADVLKANSMACAVAI FT KSANLRRKGSETYNILESI" FT CDS 5405..5962 FT /codon_start=1 FT /product="21 kDa protein" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:L8AAQ9" FT /protein_id="AGE45900.1" FT /translation="MEFRPVLVTVSYEPCSTVGGIKVLAYDLQYDNIFDNCEAKSFKDS FT ESGYTVVKEYTTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNVFPQMRKDINRV FT CEIHRAGYLETYLGDGQADVDIFFEILTDNRSKVRWFVSKDHAAWSGLLNDLKWEESNK FT EKFKGRDILDTYILSSDYPGFK" FT CDS 5959..6492 FT /codon_start=1 FT /product="19.6 kDa protein" FT /note="ORF9" FT /db_xref="UniProtKB/TrEMBL:L8AAJ6" FT /protein_id="AGE45901.1" FT /translation="MKLFSLHLLILKLSKSIKTNDHSTLILVKEALINYYNGSFLNSEA FT VLAETKISISKFLVDRTATPKSCEIMKALISNTISTLTIEGARHFVGDLILVADASISA FT LEEVKLICDTRRLLKRRGRYYYSGRSGSDIAKVGYTLGGESGRKGSGSSSKLYCEGKTT FT DGCLLQYVLVSSLG" FT CDS 6499..7038 FT /codon_start=1 FT /product="19.7 kDa protein" FT /note="ORF10" FT /db_xref="UniProtKB/TrEMBL:L8A5H4" FT /protein_id="AGE45902.1" FT /translation="MDLSFVIIQMLSALYNNDLSALYLLINCYKNIIETTGEGGLNDPQ FT AQVNTIKSYVATCSTTDLHRSVLTQSIDLASNYDAVGCLVSTAKNLSKHSESVLEIIKE FT MELFEVCVGKRGSKRYLKRLSDLCSSKNMMLTQAGLCAVEEADLLRAHYFVSENGYSST FT CGLTRMLLLTLCNGAL" FT CDS 7038..7166 FT /codon_start=1 FT /product="4 kDa protein" FT /note="ORF11" FT /db_xref="GOA:L8AAL8" FT /db_xref="UniProtKB/TrEMBL:L8AAL8" FT /protein_id="AGE45903.1" FT /translation="MVVFCCHTTGHVGTGVVVAVVVLSVVLLVFLCVCRRRQDETS" FT CDS 7153..7323 FT /codon_start=1 FT /product="7 kDa protein" FT /note="ORF12" FT /db_xref="GOA:L8A9R7" FT /db_xref="UniProtKB/TrEMBL:L8A9R7" FT /protein_id="AGE45904.1" FT /translation="MRHLEKPIRVAIHYCVVRSSVCDSMDVFIGLTLVGILVTFYLSIL FT FALCTRVRSSV" FT 3'UTR 7324..7612 XX SQ Sequence 7612 BP; 2221 A; 1391 C; 1903 G; 2097 T; 0 other; atatcgaacg ttacgtcgag aagttaaaac ctacgtacac tgttaaaatc gatagcggtg 60 gtgccttact tatgggaggc ttgggttccg gtccggacgt tttattacga gtagtagacg 120 ttatatgttt atttttaaag gcgttggttt tggagtgtga aagacagact tcgtcgacca 180 taacggctgc agtcgtgaca gtaccagctg actataactc ttttaagcgg agcttcgttg 240 tcgaagctct taaggggttg ggtataccgg tgaggggggt cgttaacgaa ccgacagccg 300 cagctttatt ttccttggct aagtcgaaag tcgaagatct attattagcg gtattcgatt 360 tcgggggagg gacttttgat gtctcctttg taaagaagaa aggtgacgta ctatgcgtaa 420 ttttttcggt tggcgacaat ttcctagggg gtagggacat agatagagca gtcgtcgagg 480 tagtaaagac aaaaattaaa gggaggttgt ctgacgccaa gctggggata tttgtatctt 540 cgattaaaga ggagttgtcg aacaacagcg ctatcacgca acaccttatc ccggtagagg 600 gtggtgttga ggttgtagat ttgacttcag aggaattaga cgctatagtc gcccctttta 660 gtgaaagagc aatagaagta tttaagacgg gtttaagcaa tttctatccg gatccagtta 720 tagctgtgat gaccggcggt tcgagcgctc tctcaagggt acgtaaagat gtggcggcat 780 tgcctcaaat atctaaggtc gtgtatgaca gtaacgactt cagatgttcg gtggcgtgtg 840 gggcgaaggt ttattgtgat atcttagcgg gtagtagtag tttgcgacta gtagacacct 900 taaccaatac gctcacggat gaagtttctg attttacgcc tgtggtgatt ttcccgaagg 960 gtagtcctat accgtgcact tatacacaca cgtatgatgt gtcgggtggt gatgttattt 1020 atggtatttt tgaaggtgag aataataggg cctttttgaa cgaaccgact ttccgtggca 1080 tatctaagca caggggagaa cctaaagaaa aggatgtggc acagttcagt ctatcaaccg 1140 acggcaccgt gtcattagtg gtgaacggtg tggaggttaa gaatgagtat ttggtaccgg 1200 gtacgacgga cgtcctaaat tcactgacgt ataagtcggg aagggatgag ttggaagcta 1260 aagcgatacc cgagtattta acgacattga atgttttgca cgcaaaaacc ttaacgagaa 1320 agaatttgga cgtaagggat aaagtgttct ctagtttgaa gatagaggag aattttgtta 1380 aatcgaaagt ggacccgcta gcgatactgg atggataagt actgttatat tacgggtatt 1440 ctagatccta gcgcagctag gtcggaggtg ttcaaagtag tgaataaaga atatatagga 1500 ccgagcggtc ggtcgttttc aaagggttcg agtaaataca ccgttttatg ggatggtaat 1560 gtggcgaggg ttagtggttt ttcttcaacg gtccaggcaa cggtagatgc cttcgcgtat 1620 tttctattga agggtggatt aacaaccaca ctatcgcatc cggggaattg tgagagatat 1680 attaggactt ccgctgatat gaccaattta ttcaaggcaa tgcaaagggg aaggatttac 1740 atgtcacggt caatagatag caaccttcca tatgaggaca ggaagaagat tgaagaagca 1800 tcacgacgtc tatcgccatc ggacgccgcc ttttgtaaag ccgtctcggt gcagattggg 1860 agattcgttg acccaacgag gcaattacaa gcggtcgatg ttccattgca cgtggtgaag 1920 ttaagaaaaa gggaggggat agcgcaagca tctttaccaa aagtagtttc ggctttcgtt 1980 gactttttca ccgacttgca agaactttta tccgatgaag tgttaaaggc acgaacagat 2040 acggtgaccg cttacgcaac tgaaacgatg gcgtttatgg ttaaaatgct gccgttgact 2100 tctaaggagc agtggttgca cgacctttta gggtaccttt tggttcggag gcgacccgta 2160 aatttctcgt acgattctag agtgtcttgg gtctacgatg ttgtagccac ggttaaagac 2220 gccttgaaac tcttcttcaa taaagatatg tcgggcggta ttaaagagct aaaaccgtac 2280 gtaccgatag agtcgttcga tccattccat gagctttcgt catatttttc aaggttgagc 2340 taccaattaa gcgctggtaa aggggctaaa atttgccccg agcttgcaga aaagcttgtc 2400 cgtcgtctca tggaggacaa ttatagatta agattaactc cagtagtttc gctgattata 2460 atactaatat attactccat ttatgggacg aacactacta ggatcgtacg tcgcccatgt 2520 cgtttgaagg ttagattgag gggtaaagtc gaagaagtct cgctacaggg cgtagaagat 2580 cgtgcttaca agttgtcgca aaagcgaggc gtaaacgcgc agcgtatcgt atgtaggtat 2640 tatagcgatt taacctgttt agctagacgc cattacgaca tccacaggaa taattggaaa 2700 actttaaatt acgttgatgg tagattggcg tatgataccg ccgattgtat aacatcgaga 2760 gtgaggaata tgattgattc agccgatcac gctaggatca tacagtacat aaagacgaac 2820 gataatcccg taactgggac tgcgatgcca catcagcagt aatattaagt ttgttgagca 2880 acgatggttc tcgtggttat tttatattga attaacagtt ggctttggag cgagtgattt 2940 gtactaaaca gtatcgatgg ctttcgacct gaaattggga caaatatatg aggtagtccc 3000 agagaataat ttgagagtaa gagttggcga cgccgcacaa ggtaaattta gcaaaccaga 3060 gtttttaaaa tacgtcaaag atggtacaca ggctgagtta acgactgtac cggtagtacc 3120 cgataagtat gtttttgcta ctgcagcctt agccaccgcg gcgccagcac cagccaggcc 3180 ggcaccagca ccagtggtgg aaacgcccga aacagacgtg ggtgttgtac cggaatccga 3240 aaccctgaca cctaataaac ttgtctttga aaaggatcca gacaagtttt tgaaaactat 3300 gggtaagggc attgcgttgg accttactgg ggttacgcat aaaccgaaga ttattaatga 3360 accggggaag gtgtccgtgg aagtggctat gaagattaat gcagctctaa tggaattgtg 3420 caagaaggtt atgggcagtg atgatgccac gaccaaaaca aagttctttt tgtatgtaat 3480 gcagatagcg tgtacgttct ttacatcttc ctcgacggaa ttcaaagagt tcgattatat 3540 tgaaacggac gatgggaaga agatatacgc aaattgggtg tttgattgta ttaagcaagc 3600 tgcggcctca acgggttacg agaacccagt gaggcagtat ctggcgtatt ttacaccaac 3660 atttattacc gcaacgttga atggtaagct agtcatgaat gagaaggtta tggcacagca 3720 tggagtgcca cctaaattct ttccatacac gattgattgt gttcgaccat catacgacct 3780 attcaacaat gacgccatac tggcctggaa cttggctaga caacaagcgt ttaggaacaa 3840 gaacgtgaca gccgacagca cactacacaa tgtcttccaa ctattgcaaa agaagtaggg 3900 gcgaccggcg tcgatgatca tgtaaaataa tagcgaagtt agtttctcag tgtttctcgt 3960 atgggtgctt acactcacgt agattttaat gagtcgaggt tgcttgagga taagaaagct 4020 tacctcactt tcaagtcagc gaacgacgcc ccaccagatc caccgacgta cacccgtact 4080 gatgggtaca cgagggccta tctgatagaa agagcggatt ttccagagat cggcaacctg 4140 acggtaacca tatcgatagc gagtaacaag ctagcatcag gtctcatggg tagcgacgct 4200 gtattgtcgt cgtttatatt aatgaattca aaaggagatt attttgaatg tggtgtgtgt 4260 cacaacaagc cgtacttagg gagagaggtc gtgttctcaa agaggtatat aggtggaaga 4320 ggaaccgaaa tcacgactgg aaaaaattat gcgtccaata attggaacga aaactcgtac 4380 gttttgaaag tggatattaa taacgggtta gcacagacga cggtgaatac gtcttatacc 4440 caaacggacg tgtccgggtt acccaaggac tggaatcgta tttataaagt aaccaagatc 4500 gtctctgcgg atacgaatct ttaccctggt tgcttttcgg aggctaagtt aaacgtaatg 4560 ttgataaggg ccgtcctaat atcgacgatt gatctgcgtt ttagaaaagt tttgctcaaa 4620 ccattgagga aatcttttct cgcacgaccg caagatgcca atagtatcga cgattcttta 4680 ttaattgagt ctgcttcgac aacaatagcg actacagacg cgtcgaatgt accagaccag 4740 ctaaacacgg tagaattgac atcggacata gcggagttga taaatactag aggtcaaggg 4800 aggataagtt ttccagactc tattttgtcc ataaatgaga aagacatcta cgatgagcgt 4860 tacttgccaa taacagaagc tctgcaaata aacgctagat tacgtaggtt agttatctct 4920 aaaggtggaa gccagtcacc taaggacatg ggaaatttca tagtagctat gattcaactt 4980 ttcgtgctct attctaccgt aaagaatata agcgttaaag aaggttacag agtggaaact 5040 gagcttggcg gcaagcgcgt ttatataagt tactcggaag taagggaagc tatattagga 5100 gggactcttg acgcatcgcc cactaatacc ataaggtctt tcatgaggta ttttacgcac 5160 acggccataa cgcttctaat cgaaaagaaa atccaaccag cgtacaccgc tctagctaag 5220 cacggagtac caaagaaatt taccccgtat tgcttcgatt tcgccttgct cgataataga 5280 tactatccgg cggacgtgct aaaggctaac tcgatggctt gtgcagtggc tattaaatcg 5340 gccaacttaa ggcgtaaggg ttcggagaca tataacattt tagaaagtat ataaaggcaa 5400 aggaatggag tttaggccag ttttggtaac agttagctat gagccatgtt cgaccgtggg 5460 cggtattaag gttctagctt acgacttgca gtacgataat atttttgata actgtgaggc 5520 taagtcattt aaagattcgg aaagtgggta cactgttgtg aaagagtaca cgaccaattc 5580 agctttcatc ctgagcccgt acaagctatt ttccgcagtc ttcaacaaag aaggtgaaat 5640 gataagcaac gacgtagggt ctagtttcag ggtgtacaat gtttttcccc agatgcgtaa 5700 ggatattaat agggtatgtg aaatacaccg tgccgggtat ttagagacat atctagggga 5760 tggacaggct gatgttgata ttttcttcga aatattaaca gacaacagat ctaaagtaag 5820 atggttcgtc agtaaagacc atgccgcgtg gtcgggattg ttgaatgatt tgaagtggga 5880 ggaaagtaac aaagaaaagt ttaaggggag agatatacta gacacttaca ttttatcttc 5940 agattatccg ggatttaaat gaagttgttc tcattgcacc tgcttatact aaagttatca 6000 aaatcaatca agaccaacga ccactcgacg ctcatactag tgaaagaagc gttgataaat 6060 tattacaatg gatcgttctt gaacagcgaa gcagtactcg cggaaaccaa aatcagtatt 6120 tcgaaattct tggttgatag gaccgcaacg ccaaagtctt gtgaaatcat gaaagcttta 6180 atcagtaata cgatcagcac actgacgata gaaggagcta ggcacttcgt cggcgactta 6240 atacttgttg ctgacgcttc gatctcagca ttagaggagg ttaagctcat ttgcgataca 6300 cgtcgcttac taaaaaggcg aggacggtac tattacagtg gtcgttcggg ttccgacatt 6360 gcgaaagttg ggtatacgtt gggaggtgag tctggaagaa aaggaagtgg aagctcgtcg 6420 aagttatact gcgaaggaaa gactactgac gggtgtctgc tacaatacgt gttagtttct 6480 tccctaggtt aagtcgtcat ggatttgtcg tttgtgatca tccaaatgct ttccgctctg 6540 tacaataatg acttatcggc gttatattta ttgattaact gttataaaaa cattattgaa 6600 acgaccggtg aaggaggatt aaacgatccg caagcgcaag ttaacactat aaagtcatac 6660 gtagctacat gttcaactac cgatttgcac cggtctgtac taacccagag cattgatctt 6720 gcgtctaact acgacgccgt ggggtgtctt gtgagtacgg ctaagaatct ttccaaacac 6780 tcggaaagcg ttctggagat aatcaaggaa atggaactct ttgaggtgtg cgtcggaaaa 6840 aggggaagta aaaggtacct taagcgctta agcgaccttt gctctagtaa gaatatgatg 6900 ttgactcaag ctgggttgtg cgctgttgaa gaggccgatt tactacgtgc acactacttc 6960 gtgagtgaga acggttatag cagcacttgt gggttgacta gaatgctgtt attgacttta 7020 tgtaacggag cactttaatg gtagtgtttt gttgtcacac gacaggacac gttggtactg 7080 gcgtagtcgt cgctgtcgtg gtcttgagtg tcgtactttt agtttttctc tgcgtttgcc 7140 gaagacgaca ggatgagaca tcttgaaaaa ccaataagag tagcaataca ctactgcgta 7200 gtaaggagta gcgtgtgtga ctctatggat gtatttatag gactaacctt agtaggtatt 7260 ctcgttacgt tctatttgtc gatacttttc gcgttatgca cgagggtaag atcttcggta 7320 taggtacgtc ctagatgtag taatttagat tagtaaataa tcttagtata gttttgaaaa 7380 agacaaaaat attttgttag ttgattttca acccttttgt aatttaggtc atatttcgag 7440 gtaagatgac taaactctac ctcacggttt aatactctga tatttgtaaa attagtccgt 7500 aaagtcgata gtagtattat gtagaattaa cataataaac gccaaaatcc aactagagtt 7560 gggacctagg cgggcctctt acgaggctaa cttatcggca ataagttagg tc 7612 //