Dbfetch
ID JX219471; SV 1; circular; genomic DNA; STD; VRL; 2586 BP. XX AC JX219471; XX DT 03-SEP-2012 (Rel. 114, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Okra yellow mosaic Mexico virus - [Sida:Colima 2] strain Colima 2 segment DE DNA-B, complete sequence. XX KW . XX OS Okra yellow mosaic Mexico virus - [Sida:Colima 2] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2586 RA Cantu-Iris M., Cardenas-Conejo Y., Mauricio-Castillo J.A., RA De la Torre-Almaraz R., Ambriz-Granados S., Arguello-Astorga G.R.; RT "New Strains of Okra Yellow Mosaic Mexico Virus Isolated from Weeds"; RL Unpublished. XX RN [2] RP 1-2586 RA Cantu-Iris M., Cardenas-Conejo Y., Mauricio-Castillo J.A., RA De la Torre-Almaraz R., Ambriz-Granados S., Arguello-Astorga G.R.; RT ; RL Submitted (22-JUN-2012) to the INSDC. RL Molecular Biology of Plants, Instituto Potosino de Investigacion Cientifica RL y Tecnologica (IPICYT), Camino a la Presa San Jose 2055. Col. Lomas 4 RL seccion, San Luis Potosi 78216, Mexico XX DR MD5; 5ec09fca6d8f1cbbc60447b505f0c4c6. XX FH Key Location/Qualifiers FH FT source 1..2586 FT /organism="Okra yellow mosaic Mexico virus - [Sida:Colima FT 2]" FT /segment="DNA-B" FT /host="Sida rhombifolia" FT /strain="Colima 2" FT /mol_type="genomic DNA" FT /country="Mexico:Colima" FT /collected_by="Gerardo R. Arguello-Astorga" FT /collection_date="01-Jan-2010" FT /db_xref="taxon:756894" FT gene 438..1208 FT /gene="BV1" FT CDS 438..1208 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /note="nuclear transporter; nuclear import/export of viral FT DNA; BV1; BR1; NSP" FT /db_xref="GOA:J7K1N0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:J7K1N0" FT /protein_id="AFQ60153.1" FT /translation="MYPVRFKRGFTFTPRRFYSRNHVFRRSTPFKRDDGKRRPVTVNKA FT HDEPKMSTQRIHENQYGAEFTMAHNSAISTYISYPNLGKTEPNRIRSYIKLKRLRFKGT FT VKIERVSTDVAMDGTIPNTEGVFSLVIVVDRKPYLTAAGCLHTFDELFGAIIHSHGTLS FT IVPALKDRYYIRHVCKRVLSVEKDNVMVDIEGSTSLSNRRYNCWASFKDLDLDSCKGVY FT DNINKNALLVYYSWVSDTVSKASTYVSYDLDYIG" FT gene complement(1246..2127) FT /gene="BC1" FT CDS complement(1246..2127) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /note="plasmodesmata-associated protein, involved in virus FT cell-to-cell movement; MP; BC1; BL1" FT /db_xref="GOA:J7JZC1" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:J7JZC1" FT /protein_id="AFQ60154.1" FT /translation="MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTAR FT LSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILC FT EQFTDKDVDFSHVDYGRWERKPIRCASMSRVGLRGPIEIRPGESWASRSTVGTGHSDAV FT SEMENELHPYRHLNRLGTSVLDPGESASIVGAQRAESNITMSAAQLNELVRTTVQECIK FT SSCNAPQPKIFK" XX SQ Sequence 2586 BP; 660 A; 542 C; 597 G; 787 T; 0 other; accggatggc cgcgcgattt tttccccccc ccacgtggcg taatcgcgcg ctctctccct 60 ggtgctgtcc tctctctcct ggtgcccttc tatacgtggc cgctcgctac tggtgctttc 120 tcgctacaat gggccatgtt gtcagtaaat tttttgactg accctttaat tcaaattaaa 180 ggttaaatct tttatgactc gcgatatcaa ttccaacttg aattattgat tcgccttttt 240 tcattatgcc ccattgtact atacggtcga cgtggccgat ttgtgacctt gctgctgagt 300 caagttaatc tgttgtttga attatttttt tctatatatt ggtcccggat catgtatatt 360 attcgaagtg actcagcagt ccatcacgtt tatttgaata gctaaatcat caattcatca 420 cattgtatcg gttgatgatg tatcctgtta ggtttaaacg tggttttaca ttcaccccac 480 gacgatttta ttcacgtaat cacgtgttta ggcgttctac acccttcaag cgagatgatg 540 ggaaacgtcg gcctgttact gttaataagg cccatgatga gcccaagatg tcaacccaac 600 ggatccacga gaaccaatat ggcgcagaat ttacaatggc ccataattca gccatttcaa 660 cctatatctc atatccgaat ttgggaaaga ctgaaccgaa ccggataagg tcgtatatca 720 agttgaaacg actacgtttc aagggtacgg tgaagattga acgtgtttct actgacgtgg 780 cgatggatgg tactattccc aacacagaag gagtgttctc attggtcata gtcgttgacc 840 gaaaacctta tctgactgca gctggatgcc tacacacgtt tgacgaatta tttggtgcga 900 taatccacag ccatggaacc ttgtctatag tcccagcgtt gaaggatcgt tattacatac 960 ggcatgtatg taaacgggta ctgtccgtgg agaaggataa cgtaatggtg gatattgaag 1020 gatccacttc tctctcgaac aggcgttata attgttgggc aagttttaaa gatctggatt 1080 tggattcatg taagggtgtt tacgacaaca taaacaagaa cgccctgtta gtttattatt 1140 catgggtatc tgatactgtg tcaaaagcat cgacttatgt atcgtacgac cttgattata 1200 ttggataatt aataataata agtaatttcg aaataagaaa atttattatt tgaatatttt 1260 gggttgaggt gcattacaac tactcttgat acattcttgg acggttgtcc taactagttc 1320 gtttaattgg gctgccgaca tggtaatgtt ggattccgct ctctgtgccc ctacaatcga 1380 agcagactct cccgggtcta acacactggt tcccagccta tttaggtgcc tgtacgggtg 1440 gagctcgttc tccatttctg agaccgcatc tgaatgcccc gtgccgaccg tactcctgga 1500 agcccacgat tcaccaggcc ttatttcaat tgggcctctg agtccaactc tcgacatgga 1560 cgcgcatctg atgggcttcc tttcccatct tccgtagtct acgtgcgaga agtcgacatc 1620 cttgtcggtg aattgttcgc aaaggatctt cactgtcggt gcccggaaag ggatatccac 1680 tgagtgtttc gccgtcgaca gtttcagttt ccctttgaac ttcgcgaagt gggtcctctg 1740 atgaacattc gtatcgcaaa ctctgtagta gagtttccag ggaattgggt cctttaacga 1800 gaagaacgaa gcggaaaagt agtggagatc tatgttgcat ctgatgggaa aagtccacga 1860 cgcttgcaga gattcgttgt ccgtcatcct tttgtcgtgg atctccacta ttactgtccc 1920 tgtggcgtta atcggaacct gctgcctata ttctatgacg cagtggtcga ttttcatgca 1980 gctccggcta agccttgccg tcaactgtga cgccgtcgac gggaattgca gaattatctc 2040 ggtcaggtcg tgagaaagct gatactcgtc cctgtgagat tctatgtaat taaaggcgtt 2100 cggaggattt accaactgag aatccatatt aagaaaagaa ggccgcgcag cggaaccttt 2160 tgctgaagtt gaactgccga tgaagaaatt agggtttgtt tgggaaacag tcgacgatca 2220 acggttgaag atgaagaagg ttttctgggt ttcccagaaa ttaaatcagt acctgaggaa 2280 catttatgtt agacgtactg attatgggaa gtgtttttga gaaagaggag aaatctggta 2340 aagatttcga agatgattat ggtttacagt ggatagtctt tatatagacc cctttactct 2400 cttatagaga gcgttcggga gaagtttgtg tttaggtgaa atgatggcag ttttgtaaat 2460 aagagggtgt gtaccgattg agctctctcc aaactctgtg aatgaattgg tacacaggta 2520 cacaatatat agtagaactc tcattaaagg gatttgcaac acgtggcggc catccgatat 2580 aatatt 2586 //