ID JX197071; SV 1; linear; genomic RNA; STD; VRL; 4772 BP. XX AC JX197071; XX DT 01-JAN-2013 (Rel. 115, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Moroccan pepper virus isolate MPV-PM75, complete genome. XX KW . XX OS Moroccan pepper virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4772 RX DOI; 10.1094/PHYTO-07-12-0166-R. RX PUBMED; 23360531. RA Wintermantel W.M., Hladky L.L.; RT "Complete genome sequence and biological characterization of Moroccan RT pepper virus (MPV) and reclassification of Lettuce necrotic stunt virus as RT MPV"; RL Phytopathology 103(5):501-508(2013). XX RN [2] RP 1-4772 RA Wintermantel W.M., Hladky L.L.; RT ; RL Submitted (19-JUN-2012) to the INSDC. RL Virology, USDA-ARS, 1636 East Alisal Street, Salinas, CA 93905, USA XX DR MD5; c7944fdd4aa27c332c83aa34218a2a76. XX FH Key Location/Qualifiers FH FT source 1..4772 FT /organism="Moroccan pepper virus" FT /host="pepper" FT /isolate="MPV-PM75" FT /mol_type="genomic RNA" FT /country="Morocco" FT /collection_date="1975" FT /note="type isolate; virus stored in laboratory freezer and FT reactivated for sequencing" FT /db_xref="taxon:208086" FT CDS join(167..1054,1058..2623) FT /codon_start=1 FT /ribosomal_slippage FT /product="92 kDa Protein" FT /note="replication protein; P92" FT /db_xref="GOA:K9LPN7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:K9LPN7" FT /protein_id="AFM91594.1" FT /translation="METIKRMIWPKKEIFVGDFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELTFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRAGPPNAKDRNIFM FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKNGILTRTPQPTKGAFSRLSPFRKAVC FT EKVGVAHRLGYDGFLSYYSGAKLRTYKRAVESLHITPVSERDSHLTTFVKAEKISTAKG FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREKW FT DRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRALYPGNKLLSKLLDWQLHNKGKGYVP FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEFSLANCGDDCVLIVERR FT NLKQIQGTLPEYFLGLGYTMKVEKPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSKD FT VHCVNNIRDLATRRAWSNAQHFGGRALTSGIPVVDKFYSRFVVYDAPKKHQRIDTVTNV FT HKWRGSGGAYTVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL FT DSAVA" FT CDS 167..1057 FT /codon_start=1 FT /product="33 kDa protein" FT /note="replication protein; P33" FT /db_xref="GOA:K9LPI5" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:K9LPI5" FT /protein_id="AFM91595.1" FT /translation="METIKRMIWPKKEIFVGDFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELTFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVK" FT CDS 2645..3820 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:K9LPZ6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K9LPZ6" FT /protein_id="AFM91596.1" FT /translation="MAMVVRNNNTALVPYSGGKRGLQKAFGFGATIVGQKIYDNRGKIV FT GFMVEQGKKGLSKMANALGYGNGQKAQNLVGGMGGAIMAPVAVSRQLRGSKPRFTGRTA FT GSVTVTHREYVRQVNNTSAFTVNGGIVGNLYQLNPLNGTLFTWLPSIASNFDQYAFNNV FT TLHYVPLCSTTEVGRVGLYHDKDSQDPEPTDRQELANFSTLKETPPWGEVMLRIPTDRI FT KRYCDDSNAVDHKLIDLGQVGIATYGGAGANAVGDVFISYSITLFSPQPTSSLLSTRQQ FT SLLGATGLTTGPSYLTVSSTTTVLTLTFRATGTFMVSGHFRDTGAAVLGLAGNINVNSL FT TVLDTVGLATSFSINCSVSALPSTITFTSTAITSSTVHCVRAVRANDATLL" FT CDS 3854..4423 FT /codon_start=1 FT /product="22 kDa protein" FT /note="P22" FT /db_xref="GOA:K9LP71" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:K9LP71" FT /protein_id="AFM91597.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVALLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT RVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3886..4404 FT /codon_start=1 FT /product="19 kDa protein" FT /note="P19" FT /db_xref="GOA:K9LP92" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:K9LP92" FT /protein_id="AFM91598.1" FT /translation="MERAIQGNDAREQANSERWNGGSGGSTSPFKLSDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDGTEASLHRVLGSWTGDSVNYAASRFFG FT INQIGCTYSIRFRGVSVTISGGSRTLQHLCKMAVRAKQELLQLAPVEVESNVSRRCPEG FT FKAFEEESE" FT CDS 4487..4663 FT /codon_start=1 FT /product="putative 3.7 kDa protein" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:K9LPN8" FT /protein_id="AFM91599.1" FT /translation="MMTSQVGLYGGFGRPWDGDKERASYAVRLTSVELAIWTYAWISHN FT VTAQCKLDANLQL" XX SQ Sequence 4772 BP; 1246 A; 994 C; 1299 G; 1233 T; 0 other; agaaattctc caggatttct cgacctagtt cgtttatctg gtgacttgcg cttctgttgc 60 tttgcgtaga gaatttctct ccttaattac tatctttaat tttggggttt gaaggttggg 120 tctacctttc ggggggataa attgtaactt ccaacaaata agcacaatgg agaccatcaa 180 gagaatgatt tggcctaaga aggagatctt tgtaggagat tttgcgactg gagttaatag 240 gacggcaccg gtggacatct tccagttggt gtgtcgtgtg gttttgagat acatgaggac 300 agggaaaata gagtgtgatt ctgacagcat gacaaagttt gtggttgagt tacttaagac 360 agactgtgct gccaaatggg agtggtttat gaagagacgg cagaggggtg actatatcgt 420 ccctctatct atagcctcca tcccaatcat accgctgttg agttacgcca cgagggtacg 480 cgcagtctca gtcaaggctt ttggtaatga actcacgttc aatattcgag tgcctagacc 540 atctgtacct aagaaaggtt tactcctcag actggcggca ggactagcac tcgcacctat 600 atgcgcgcta gccatgtacg ctaccctacc tagggaaaaa ctgtcggtat ttaagcttag 660 aactgaggca cgggctcaca tggaggatga gagagaagcg acagattgtt tggtggttga 720 accggctcgt gaacttaaag ggaaggatgg agaggatctc ctcactggta gtagaatgac 780 aaaggtaatt gcgtccacgg gacgccctcg ccgcagaccg tacgctgcga agattgcgca 840 agtggcgaga gcaaaggtgg gttaccttaa gaacacacct gagaacaggt tgatctatca 900 gagagttatg atcgagatca tggacaaaga ctgcgtccgg tacgttgaca gggatgtcat 960 attacctttg gctataggat gttgctttgt gtatccggat ggagtagagg agtcggcggc 1020 actgtggggt tcttcggaat cccttggtgt gaaataggga ggcctagtac gtctacctgg 1080 ggttgtaaca cagaccaata gagatatccc atctggtgtg ttgcttcccc aggaggtgct 1140 agaggttcgt gcaggacctc ctaatgctaa ggaccgtaat atatttatgg ttgctggttg 1200 cccatcacag gcgcggttct tagtacataa tcactgcctg aaaaacctaa aaaggggtct 1260 tgtggagaga gttttctgtg tcgagaagaa cggaattctc actcgcactc cacaacctac 1320 caaaggagcc tttagtcgtc tttccccgtt caggaaagca gtctgtgaga aggttggagt 1380 agcccaccga cttgggtatg acgggtttct gtcatactac agcggtgcga aacttcgtac 1440 ttacaaacgg gctgtggaga gtctgcatat cacacctgtc tcggagaggg atagtcatct 1500 gactaccttc gtcaaggcgg agaagatatc gacagctaaa ggtgacccag cacctagggt 1560 gatacagcct cgtaacccta ggtacaatgt cgagcttgga agatatctac ggcatatgga 1620 atccaaactg atgaaagctg tggatggcgt atttggagaa acgacatgca tcaagggata 1680 tactgccgat gaggttggcg cgatttttcg ggagaagtgg gacaggtttg ataagcctgt 1740 agccataggt cttgatgcgt caaggtttga tcaacactgt tccgtggaag ctttgcaatt 1800 cgagcatagt ttctacaggg ccctgtaccc tggtaacaag cttttgagca agttattgga 1860 ctggcaactc cataataaag gtaagggtta tgttcctgat gggactatta cctatcgcaa 1920 ggagggctgc cgcatgagtg gggatataaa cacctcgttg ggcaattatc tactaatgtg 1980 tgctatgatc tatggataca tgcgccattt ggggatcaat gagtttagtc tggcgaactg 2040 tggggatgat tgtgttctaa ttgtggagcg caggaatctt aaacagatac agggcacact 2100 acctgagtat ttcctaggat taggatacac aatgaaggtg gaaaaacccg tgtttcaatt 2160 ggaagaggtt gaattttgcc aggcacaccc cgtgcagttt caaggtggtt ggaagatggt 2220 caggaatgtc cgtactgcaa tgagcaaaga tgtgcactgc gtcaataaca tacgggatct 2280 cgctacgcgt agagcctgga gtaatgcaca gcactttggg ggaagggctt tgacatccgg 2340 tatcccggtt gttgataagt tctactctcg gtttgttgtg tacgatgccc ccaagaagca 2400 tcaacgtatt gacacagtga ccaacgtgca taagtggcgg ggatccggag gggcgtacac 2460 tgtaactcct gaatctaggg ctagtttttg ggctgccttt ggactcacgg gggatgaaca 2520 gttagcgctt gaggaccgtt tggacagatg ggagatggat ctatttggag aggagggtgt 2580 tgacgctcat gagcccagca tccttgactc cgccgtagca tgaccaagca agataagtta 2640 cacaatggca atggtagtaa gaaacaacaa cacagcatta gtaccgtata gtggaggcaa 2700 acgtggcctc cagaaagcat ttggatttgg agctacaatc gtcgggcaaa agatttatga 2760 taatcgtggt aagattgtag ggttcatggt agaacaagga aagaaaggtc taagtaagat 2820 ggctaatgct ctcggttatg gcaatggtca gaaagctcag aatctggttg gtgggatggg 2880 tggggccatt atggctcctg ttgcggtctc gaggcagctc cgtggaagta aaccccggtt 2940 tactggacgc acagctggtt ccgttaccgt cacccaccgt gagtatgtac gacaggtaaa 3000 caacacgtct gccttcacag tcaatggggg tattgtcggg aatttgtatc aactgaaccc 3060 tttgaacggt actctgttca cttggttgcc ctccatagca tccaattttg atcaatacgc 3120 gttcaataac gtcacgttgc actatgtccc cctctgtagt accactgagg taggtcgtgt 3180 tggattatat catgacaaag actcacagga tcctgagcct actgataggc aggagttggc 3240 gaactttagt acccttaaag agacaccccc ctggggtgaa gtaatgttgc gaatacccac 3300 tgataggatc aagaggtact gcgatgacag taacgcagtc gatcataagc taattgattt 3360 gggtcaagta ggcattgcta catatggggg tgctggcgct aacgccgtgg gtgatgtgtt 3420 tatatcgtat agcattactt tattctcacc tcagcccact agctcattgc ttagcacaag 3480 acaacagagc cttctcggtg ccactggtct cacgactggc ccgagttact tgacggtgtc 3540 cagcacgacg accgttctca ccttgacgtt tagagctact ggcaccttta tggtctccgg 3600 tcacttccgt gatactgggg cagccgtatt aggtctcgct ggtaatatca atgtaaattc 3660 actgacagtc ttggatacgg ttggtttagc cacctcgttt tccattaatt gttcagtgtc 3720 tgctttaccg tctaccatta cctttacctc cacagcaata acatcttcca cggtacactg 3780 tgtacgggcc gtaagggcca atgatgccac attgttgtaa ctgtgtgagg ggcttcttga 3840 acaagaccag ttcatggata ctgaatacga acaagtcaat aaaccatgga acgagctata 3900 caaggaaacg acgctaggga acaagctaac agtgaacgtt ggaatggagg atcaggaggt 3960 agcacttctc ccttcaaact ttctgacgaa agtccgagtt ggactgagtg gaggctacat 4020 aacgatgaga cgaattcgaa tcaagataat ccccttggtt tcaaggaaag ctggggtttc 4080 gggaaagttg tatttaagag atatctcaga tacgacggga cggaagcttc attgcacaga 4140 gtccttggat cttggacggg agattcggtt aactatgcag catctcgatt tttcggtatc 4200 aaccagatcg gatgtaccta tagtattcgg tttcgaggag ttagtgtcac catttctgga 4260 gggtcgagaa ctcttcagca tctctgtaag atggcagttc gggctaagca agaactgcta 4320 cagcttgccc cagtcgaagt ggagagtaat gtatcaagaa gatgccctga aggctttaaa 4380 gccttcgaag aagaaagcga gtaagacaga ctcttcagtc tgagtgagtg gaagcaagta 4440 ctaacctaga tagcatgtgg gttacttgca ctggtatgca gccgttatga tgacgagtca 4500 ggtcgggctc tacggtgggt ttggtcgccc atgggacgga gataaggaaa gggcctcgta 4560 cgctgtaaga ctaacttcgg ttgagcttgc gatatggacc tatgcctgga taagtcataa 4620 tgttactgcc cagtgtaaat tggatgccaa cttacaactt taggagtact tgtggaacct 4680 catgatgaca cggttgatct cacccttcgg gggggctata gagatcgctg gaagcactac 4740 cggacaaccg gaacattgca gaaatgcagc cc 4772 //