ID JX183065; SV 1; circular; genomic DNA; STD; VRL; 2583 BP. XX AC JX183065; XX DT 29-JUL-2012 (Rel. 113, Created) DT 02-JUL-2013 (Rel. 117, Last updated, Version 2) XX DE Chickpea chlorotic dwarf virus isolate D14, complete genome. XX KW . XX OS Chickpea chlorotic dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2583 RX AGRICOLA; IND500619376. RA Kanakala S., Sakhare A., Verma H.N., Malathi V.G.; RT "Infectivity and the phylogenetic relationship of a mastrevirus causing RT chickpea stunt disease in India"; RL Eur. J. Plant Pathol. 135(2):429-438(2013). XX RN [2] RP 1-2583 RA Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.; RT "Characterization of viruses associated with chickpea chlorotic stunt RT disease in India"; RL Unpublished. XX RN [3] RP 1-2583 RA Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.; RT ; RL Submitted (14-JUN-2012) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa, RL New Delhi, Delhi 110012, India XX DR MD5; 967b2082b89a6497f6dfb018a75a97aa. XX FH Key Location/Qualifiers FH FT source 1..2583 FT /organism="Chickpea chlorotic dwarf virus" FT /host="Cicer arietinum" FT /isolate="D14" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collected_by="VG Malathi" FT /collection_date="Jan-2011" FT /identified_by="Surapathrudu K" FT /db_xref="taxon:463360" FT CDS 132..410 FT /codon_start=1 FT /product="movement protein" FT /note="ORF V2" FT /db_xref="GOA:I7B2V9" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:I7B2V9" FT /protein_id="AFO38349.1" FT /translation="MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIVFGQTPARNQDHPQP" FT CDS 423..1160 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF V1" FT /db_xref="GOA:B4ERB8" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B4ERB8" FT /protein_id="AFO38350.1" FT /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK FT CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVES FT NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT gene complement(1318..2406) FT /gene="C1:C2" FT CDS complement(join(1319..1732,1819..2406)) FT /codon_start=1 FT /gene="C1:C2" FT /product="replication associated protein" FT /db_xref="GOA:I7BF55" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I7BF55" FT /protein_id="AFO38351.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GVAIELHQDGTTHCHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIMEEFPHEWATKLWLEYSANKL FT FPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTWA FT RSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKK FT IKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGVTFFARESSSH" FT CDS complement(1319..1753) FT /codon_start=1 FT /gene="C1:C2" FT /product="Rep B" FT /note="ORF C2" FT /db_xref="GOA:I7BBP2" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I7BBP2" FT /protein_id="AFO38353.1" FT /translation="MDGRSNQEPRRTGARVPSLYICGPTRTGKTTWARSLGRHNYWNGT FT IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN FT RDEDWIPAMSEHQKEYFTDNCEIHYMDDGVTFFARESSSH" FT CDS complement(1531..2406) FT /codon_start=1 FT /gene="C1:C2" FT /product="Rep A" FT /note="ORF C1" FT /db_xref="GOA:I7A6J6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7A6J6" FT /protein_id="AFO38352.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GVAIELHQDGTTHCHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIMEEFPHEWATKLWLEYSANKL FT FPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSYLEWMAD FT LTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTRPTMSLTTS FT PSSSSHCGSN" XX SQ Sequence 2583 BP; 672 A; 519 C; 648 G; 744 T; 0 other; accggcgtgg cccaccttat cgcgagcact ttagtgcgag cggttcagat ttaaagtgga 60 aaagttcccg cccactaggg tttgctttag cttttgcttt ataaaaggcg cactaatggg 120 tagaccgtag aatggaacgt attctgtatc aggtatttcc tacggatacg aattattcgt 180 acgatcctcc tcctgtgaat acgaattccc agggatcctc tcaaacggat ttcgggaagg 240 tggttatcgc cttggtggtt attctggtta gtgttggtgt gttctatctg gcgtatagtc 300 tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc accactgaaa 360 tcgtgtttgg tcaaaccccg gctagaaatc aggatcatcc tcaaccttag gcggggtgca 420 tcatgtcaac tgtgacgtgg ggaaacaaga ggaagcgcag cgataggtcc tcgaaggcga 480 agagtaagtc ctctgggtct tatgtgccca gatctgtgtc ctccaggagg gaatcgttgc 540 aggtggctac cttttcctgg accagttctg gttcgggtat caagttctct actggtggtg 600 ctgcctacct tgtgagcaat tttccacagg gtgccaacga taactgtcgt cacaccaaca 660 agaccgtgct atacaaattc atggccaaga atacggtgta cttggaccct agtcattatc 720 ctaaggtctt taagtgcccg ttcacttttt ggctggtgta cgacaaggct cctggtgcaa 780 gtgtccctag tactggggac atatttgaag gtccctctct attccctgct aatccctgga 840 cgtggactgt gtctagggct gcctgccatc gttttgttgt caaaaaaacg tggtcagtgg 900 tggtggagag caatggtgtc gatccaggaa aggcccaatc cagttcctat tatgggcctg 960 gaccttgtaa tcagattaag tcctgcaata agttctttaa gaggctgggt gtgtcaacgg 1020 agtggaaaaa tagttccacg ggggatgttg gtgatataaa ggaaggagcc ctttacattg 1080 taggtgctcc ttcccagaag tctgatgtat atgtaaatgg ttatttccga gtgtacttca 1140 agtccgttgg caatcaataa aaatttatta ttatgaatat tttacattgt gcaagtaggt 1200 agaaattcaa tatgttacat tacacacgaa ataagcaaaa aaaacacacc aaaaacaaaa 1260 gtacactacc cacgataact tataactata gcttaatccc gtatgaggag aggcacgttc 1320 agtgactcga cgattcccgg gcaaaaaaag ttacgccgtc atccatataa tggatctcac 1380 aattgtctgt aaagtattct ttctgatgct cagacatagc aggaatccag tcctcatctc 1440 tatttgttaa aattatggaa gggacaccac cttttatttt cttctttttt ccatacttag 1500 ggttgacagt gaagtcgaac tggcaaccta ttaattgctt ccacaatggg acgaacttga 1560 aggggatgtc gtcaatgaca ttgtaggtcg cgtgttcgtc gtacgtggtg aagtcgatgg 1620 tcccattcca gtagttgtgt cgtccgaggc ttctagccca ggtggtcttt ccggtacgag 1680 ttggtccgca gatgtagagg ctggggactc tagctccagt ccttcgcggt tcctggttag 1740 atcggccatc cattcaaggt aagattgagc ttgctgatat gaaactggat ggacaagagt 1800 gtaggcgtcg atgcttactt ggtacaggtg tgtatccctc cattgtgcta gatcctcgtg 1860 gcagcggaga tctgactcag tgaacggcga cacatatgct tcaggttgtg gagggaatag 1920 cttgtttgcg gaatattcaa gccaaagctt ggtagcccat tcatgtggga actcctccat 1980 gatcatgtca agatattcct ccttagacgt tgcagtctgg ataatagttc gccatcgtgc 2040 gtcagatttg cgaggagaga ctttatgatc tctgaaatct cctcttgttt taatatctcc 2100 gtccttggaa atgtattcaa ggacttgttt agagtttcta gctggctgga tattagggtg 2160 atttccttca aaatcgaaaa aagaaggatc cctaatccaa ggttttttat caagctggat 2220 aagagcatga cagtgggtag tgccatcttg atgaagctca atagcaacac caaggaagaa 2280 aataagaaaa ggtgtgagtt tctcccagag aaactcgaat aaatcatctc tttgagatga 2340 gcatttaggg taggtaagga aaacatattt tgattggaat ctgaagttct tgtttgcaga 2400 aggcatgttt gttgtgactc caagggttgg cttgaaactc tatcttataa ccggcgtgga 2460 gacttggaga caagggtatt ttggtcattt aggctgggta ttcgaataat gacatggcag 2520 tgacttaaag acgaagtctt tgcgaaagcg ataaaagggg ggagccacgc cgaaattaat 2580 att 2583 //