Dbfetch
ID JX182425; SV 1; linear; genomic RNA; STD; VRL; 4772 BP. XX AC JX182425; XX DT 01-JAN-2013 (Rel. 115, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Moroccan pepper virus isolate MPV-EM81, complete genome. XX KW . XX OS Moroccan pepper virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4772 RX DOI; 10.1094/PHYTO-07-12-0166-R. RX PUBMED; 23360531. RA Wintermantel W.M., Hladky L.L.; RT "Complete genome sequence and biological characterization of Moroccan RT pepper virus (MPV) and reclassification of Lettuce necrotic stunt virus as RT MPV"; RL Phytopathology 103(5):501-508(2013). XX RN [2] RP 1-4772 RA Wintermantel W.M., Hladky L.L.; RT ; RL Submitted (14-JUN-2012) to the INSDC. RL Virology, USDA-ARS, 1636 East Alisal Street, Salinas, CA 93905, USA XX DR MD5; c7e735d4bcdb9fff3774e394403f41d6. XX FH Key Location/Qualifiers FH FT source 1..4772 FT /organism="Moroccan pepper virus" FT /isolate="MPV-EM81" FT /mol_type="genomic RNA" FT /country="Morocco:Rabat-Sale" FT /isolation_source="eggplant" FT /note="collected in either 1980 or 1981; virus stored in FT laboratory freezer and reactivated for sequencing" FT /db_xref="taxon:208086" FT CDS join(167..1054,1058..2623) FT /codon_start=1 FT /ribosomal_slippage FT /product="92 kDa protein" FT /note="replication protein; P92" FT /db_xref="GOA:K9LPI3" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:K9LPI3" FT /protein_id="AFM91108.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELTFSIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRAGPPNAKDRNIFM FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKNGILTRTPQPTKGAFSRLSPFRKAVC FT EKVGVAHRLGYDGFLSYYNGAKLRTYKRAVESLHITPVSERDSHLTTFVKAEKISTAKG FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREKW FT DRFDKPVAIGLDASRFDQHGSVEALQFEHSFYRALYPGNKLLSKLLDWQLHNKGKGYVP FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEFSLANCGDDCVLIVERR FT NLKQIQGTLPEYFLGLGYTMKVEKPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSKD FT VHCVNNIRDLATRRAWSNAQHFGGRALTSGIPVVDKFYSRFVVYDAPKKHQRIDTVTNV FT HKWRGSGGAYTVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL FT DSAVA" FT CDS 167..1057 FT /codon_start=1 FT /product="33 kDa protein" FT /note="replication protein; P33" FT /db_xref="GOA:K9LP60" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:K9LP60" FT /protein_id="AFM91105.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELTFSIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVK" FT CDS 2645..3820 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:K9LPI4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K9LPI4" FT /protein_id="AFM91109.1" FT /translation="MAMVVRNNNTALVPYSGGKRGLRKAFGFGATIVGQKIYDNRGKIV FT GFMVEQGKKGLSKMANALGYGNGQKTQNLVGGMGGAIMAPVAVSRQLRGSKPRFTGRTA FT GSVTVTHREYVRQVNNTSAFTVNGGIVGNLYQLNPLNGTLFTWLPSIASNFDQYTFNNI FT TLHYVPLCSTTEVGRVGLYHDKDSQDPEPTDRQELANFSTLKETPPWGEVMLRIPTDRI FT KRYCDDSNAVDHKLIDLGQVGIATYGGAGANAVGDVFISYSITLFSPQPTSSLLSTRQQ FT SLLGATGLTTGPSYLTVSSTATVLTLTFRATGTFMVSGHFRDTGAAVLGLAGNINVNSL FT TVLDTVGLATSFSINCSVSALPSTITFTSTAITSSTVHCVRAVRANDATLL" FT CDS 3854..4423 FT /codon_start=1 FT /product="22 kDa protein" FT /note="P22" FT /db_xref="GOA:K9LPZ4" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:K9LPZ4" FT /protein_id="AFM91107.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVALLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGQEI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3886..4404 FT /codon_start=1 FT /product="19 kDa protein" FT /note="P19" FT /db_xref="GOA:K9LP67" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:K9LP67" FT /protein_id="AFM91106.1" FT /translation="MERAIQGNDAREQANSERWNGGSGGSTSPFKLSDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDGTEASLHRVLGSWTGDSVNYAASRFFG FT INQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAVRAKQELLQLTPVEVESNVSRRCPEG FT FKAFEEESE" FT CDS 4487..4663 FT /codon_start=1 FT /product="putative 4 kDa protein" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:K9LP90" FT /protein_id="AFM91110.1" FT /translation="MMTSQVGLYGGFGRPWDGDMERVSYAVRLTSVELAIWTYAWISHN FT VTAQCKLDANLQL" XX SQ Sequence 4772 BP; 1247 A; 998 C; 1295 G; 1232 T; 0 other; agaaattccc caggatttct cgacctagtt cgtttatctg gtgacttgcg cttctgttgc 60 tttgcgtagg gaatttctct ccttaattac tatctttaat tttggggttt gaaggttggg 120 tctacctttc ggggggataa attgtaactt ccaacaaata agcacaatgg agaccatcaa 180 gagaatgatt tggcctaaga aggagatctt tgtaggagat tttgcgatcg gagttaatag 240 gacggcaccg gtggacatct tccagttggt gtgtcgtgtg gttctaagat acatgaggac 300 agggaaaata gagtgtgatt ctgacagcat gacaaagttt gtggttgagt tacttaagac 360 agactgtgct gccaaatggg agtggtttat gaagagacgg cagaggggtg actatatcgt 420 ccctctatct atagcctcca tcccaatcat accgctgttg agttacgcca cgagggtacg 480 cgctgtctca gtcaaggctt ttggtaatga acttacgttc agtattcgag tgcctagacc 540 atctgtacct aagaaaggtt tactcctcag actggcggca ggactagcac tcgcacctat 600 atgcgcgcta gccatgtacg ctaccctacc tagggaaaaa ctgtcggtat tcaagcttag 660 aactgaggca cgggctcaca tggaggatga gagagaagcg acagattgtt tggtggttga 720 accggctcgt gaacttaagg ggaaggatgg agaagatctc ctcactggta gtagaatgac 780 aaaggtaact gcgtccacgg gacgccctcg ccgcagaccg tacgctgcga agattgcgca 840 agtggcgaga gcaaaggtgg gttaccttaa aaacacgcct gagaacaggt tgatctatca 900 gagagttatg attgagatca tggacaaaga ctgcgtccgg tatgttgaca gggatgtcat 960 attacctctg gctataggat gttgctttgt gtatccggat ggagtagagg agtcggcggc 1020 actatggggt tcttcggaat cccttggtgt gaaataggga ggcctagtac gtctacctgg 1080 ggttgtaaca cagaccaata gagatatccc atctggtgtg ttgcttcccc aggaggtgct 1140 agaggttcgt gcaggacctc ctaatgctaa ggaccgtaat atatttatgg ttgctggttg 1200 cccatcacag gcacggttct tagtacataa tcactgcctg aaaaacctaa aaaggggtct 1260 tgtggagaga gttttctgtg tcgagaagaa cggaattctc actcgcactc cacaacctac 1320 caaaggagcc tttagtcgtc tttccccgtt caggaaagca gtctgtgaga aggttggagt 1380 agcccaccga cttgggtatg acgggtttct gtcatactac aacggtgcga aactccgtac 1440 ttacaaacgg gctgtggaga gtctgcatat cacacctgtc tcggagaggg atagtcatct 1500 gactaccttc gtcaaggcgg agaagatatc gacagctaaa ggtgacccag cacctagggt 1560 gatacagcct cgtaatccta ggtataatgt cgagcttgga agatatctac ggcatatgga 1620 atccaaactg atgaaagctg tggatggcgt atttggagaa acgacatgca tcaagggata 1680 tactgccgat gaggttggcg ctatttttcg ggagaagtgg gacaggtttg acaagcctgt 1740 agccataggt ctcgacgcgt caaggtttga tcaacacggt tccgtggagg ctttgcaatt 1800 cgagcatagt ttctacaggg ccctgtaccc tggtaacaag cttttgagca agttattgga 1860 ctggcaactc cataataaag gtaagggtta tgttcctgat gggactatta cctatcgcaa 1920 ggagggctgc cgcatgagtg gggatataaa cacctcgttg ggcaattatc tactaatgtg 1980 tgctatgatc tatggataca tgcgccattt ggggatcaat gagtttagtc tggcgaactg 2040 tggggatgat tgtgttctaa ttgtagagcg caggaatctt aaacagatac agggcacact 2100 acctgagtat ttcctaggac taggatacac aatgaaggtg gaaaaacccg tgtttcaatt 2160 ggaagaggtt gaattttgcc aggcacaccc cgtgcagttt caaggtggtt ggaagatggt 2220 cagaaatgtc cgcactgcaa tgagtaaaga tgtgcactgt gtcaataaca tacgggatct 2280 cgctacgcgt agagcctgga gtaacgcaca gcatttcgga ggaagggcgt tgacgtccgg 2340 tatcccggtt gttgacaagt tctactctcg gtttgttgta tatgatgccc ccaagaagca 2400 tcaacgtatt gacacagtaa ccaatgtgca taagtggcgg ggatccggtg gggcgtatac 2460 tgtgactcct gaatctaggg ctagtttctg ggctgccttt ggactcacgg gggatgaaca 2520 gttagcgctt gaggaccgtt tggacagatg ggagatggat ctatttggag aggagggtgt 2580 tgacgctcat gagcccagca tccttgactc cgccgtagca tgaccaagca agataagtta 2640 cacaatggca atggtagtaa gaaacaacaa cacagcatta gtaccgtata gtggaggcaa 2700 gcgtggcctc cggaaagcat ttggatttgg agctacaatc gtcgggcaaa agatttatga 2760 taatcgcggt aagattgtag ggttcatggt agaacaagga aagaaaggtc taagtaagat 2820 ggctaatgct ctcggttatg gcaatggtca gaaaactcag aatctggttg gtgggatggg 2880 tggggccatt atggctcctg ttgcggtctc gaggcagctt cgtgggagta aaccccggtt 2940 tactggacgc acagctggtt ctgttactgt cacccaccgt gagtatgtac gacaggtaaa 3000 caacacgtct gccttcacag tcaatggggg tattgtcggg aatttgtatc aactgaatcc 3060 tttgaacggt actctgttca cttggttgcc ctccatagca tccaattttg atcaatacac 3120 gttcaataac atcacgttgc actatgtccc cctctgtagt actactgagg taggtcgtgt 3180 tggattatat catgacaaag actcacagga tcctgagcct actgataggc aggagttggc 3240 gaactttagt acccttaaag agacaccccc ctggggtgaa gtaatgttgc gaatacccac 3300 tgataggatc aagaggtact gcgatgacag taacgcagtc gatcataagc taattgattt 3360 gggtcaagta ggcattgcta catatggggg tgctggcgcc aacgccgtgg gtgatgtgtt 3420 tatatcgtat agcattactt tattctcacc tcagcccact agctcattgc ttagcacaag 3480 acaacagagc cttctcggtg ccaccggtct cacgactggc ccgagttact tgacggtgtc 3540 cagcacggcg accgttctca ccttgacgtt tagagctact ggcaccttta tggtctccgg 3600 tcacttccgt gatactgggg cagccgtatt aggtctcgct ggtaatatca atgtaaattc 3660 actgacagtc ttggatacgg ttggtttggc cacctcgttt tccattaatt gttcagtgtc 3720 cgctttaccg tctaccatta cctttacctc cacagcaata acatcttcca cggtacactg 3780 tgtacgggcc gtaagggcca atgatgccac attgttgtaa ctatgtgagg ggcttcttga 3840 acaagaccag ttcatggata ctgaatacga acaagtcaat aaaccatgga acgagctata 3900 caaggaaacg acgctaggga acaagctaac agtgaacgtt ggaatggagg atcaggaggt 3960 agcacttctc ccttcaaact ttctgacgaa agtccgagtt ggactgagtg gaggctacat 4020 aacgatgaga cgaattcgaa tcaagataat ccccttggtt tcaaggaaag ctggggtttc 4080 gggaaagttg tatttaagag atatctcaga tacgacggga cggaagcttc attgcacaga 4140 gtccttggat cttggacagg agattcggtt aactatgcag catctcgatt tttcggtatc 4200 aaccagatcg gatgtaccta tagtattcgg tttcgaggag ttagtgtcac catttctgga 4260 gggtcgagaa ctcttcagca tctctgtgag atggcagttc gggctaagca agaattgcta 4320 cagcttaccc cagtcgaagt ggaaagtaat gtatcaagaa gatgccctga aggctttaaa 4380 gccttcgaag aagaaagcga gtaagacaga ctcttcagtc tgagtgagtg gaagcaagca 4440 ctaacctaga tagcatgtgg gttacttgca ctggcatgca gccgttatga tgacgagtca 4500 ggtcgggctc tacggtgggt ttggtcgccc atgggacgga gatatggaaa gggtctcgta 4560 cgctgttaga ctaacttcgg ttgagcttgc gatatggacc tatgcctgga taagtcataa 4620 tgttactgcc cagtgtaaat tggatgccaa cttacaactt taggagtact tgtggaacct 4680 cacgatgaca cggttgatct cacccttcgg gggggctata gagatcgctg gaagcactac 4740 cggacaaccg gaacattgca gaaatgcagc cc 4772 //