ID JX173277; SV 1; linear; genomic RNA; STD; VRL; 7001 BP. XX AC JX173277; XX DT 31-OCT-2012 (Rel. 114, Created) DT 10-MAR-2013 (Rel. 116, Last updated, Version 2) XX DE Diuris virus B isolate SW3.3, complete genome. XX KW . XX OS Diuris virus B OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Divavirus. XX RN [1] RP 1-7001 RX PUBMED; 23089850. RA Wylie S.J., Li H., Dixon K.W., Richards H., Jones M.G.; RT "Exotic and indigenous viruses infect wild populations and captive RT collections of temperate terrestrial orchids (Diuris species) in RT Australia"; RL Virus Res. 171(1):22-32(2013). XX RN [2] RP 1-7001 RA Wylie S.J.; RT ; RL Submitted (12-JUN-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 89fb0bcec567afa70365c86371283385. XX FH Key Location/Qualifiers FH FT source 1..7001 FT /organism="Diuris virus B" FT /host="Diuris pedunculata" FT /isolate="SW3.3" FT /mol_type="genomic RNA" FT /country="Australia" FT /collection_date="1973" FT /db_xref="taxon:1247116" FT 5'UTR 1..38 FT CDS 39..6716 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:K4P3S8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K4P3S8" FT /protein_id="AFV57240.1" FT /translation="MALSYRTPTELLINQLPARLTDNLAVKQVDILQSEEDSYGQFLNF FT SLTKDQRKFLVEKGVYLSPYSWKHHSHPACKTIENWLLYKEIGNHVKHVCKDATIAFIS FT LREGKLNALKKIHFSGKEDKKLSEKITSFNRYYCGKDKLRYRNSGDREVIYSSFDQIRQ FT KTGPNASYYIHDECHYWSPQDLGAFLGKTQASSILATIIHPTEYEAGKDTSHLPFLYQF FT EVENNKLFFFPDGNRSEGYEQPSTAGWWLRMSRFFFDGEVYSITLLRSIGPFHLVYLSK FT GSLTIETKRFFDDFNILDIPVKFYKNNIVGKANLILRTGFMIKIVSYLKSLKKPDRESA FT VAKLRMMSEEDFSVEELMFVEGLAQTLMSDGYRSIWEQGWNEWIISGLRDCMPDAIHQG FT IFRKHFKAKQNFELLANLKSLKVVLRTDDYNDKSVLTQRKFLLSFGEHDNSQKANDKIC FT DIIRSQSVNDYLGGPNVSEYFLEKDTRGQMFFIFFEKRQKPVELRTEKMTYEDCIELTM FT KNDSDNYIYRKSVFKQNPKRFDIACKLNISKAKRIKDTYRIFKISCIPDFYRSKIFESK FT FVMMLADGFNMDKLIVFLISGANTEKNKIKWSTDQVQEEKAESSKRNELKEEYFSMFEK FT EEEIILSETDEEEEVPLQRKSQEMELKESNEIDEKAFCNLKNKCCFESIMQSQNWSYDN FT LLDAMKGTVFIQKMIDDKGLLVDELVELIKKININVNVVDSAGKLIELNKGAEKVLLLS FT SNHCKFTTMDSVNHWKLNDCSFLNEIMNTNYIIKETAVYERASKLYKSISSGNTGVMLH FT EMLKKNSETDRTNKKNRVLEVLKLLFDDENDNFNRTCQSKGPIYGIFGFAGSGKSKGVQ FT DYILKPENDENMFTLISPRNELLADWKKKIGEEKKNVRFLTYEKALASSYDENELVIVD FT ELSLYPPGYISLLQVVTKIKTDKISGNIRLSKRNYSNYMGDRNVSIMVLGDHLQNRYYN FT ESDTRKLSQVDEIDFIMENEEIIYLNYSLRLCKDHFYKPGIKKLGEGKAKTSRRFQNVY FT VAKKAMPDAQLLVASRDEAIRFKNLDVKTFGESQGLTFDDVIITLSPPAVNCSLQMWNV FT AMTRARYGVHFALNGFDTVDDFLNKVKGTPINAMILGVNFDIHNNVITKGKNYNLIYVD FT KMGLNLEEVELKLQGDPFLKSIIPSLDNGLPVEMEYQDITLESPVPKIHLPIESIQGQV FT AFISSNLKERMQREFIGDGIISEQFPDFWKAGEPGYLLSQSERFQSIFPKHSNSDTLTF FT FAAVKKRLKFSSPQIEREKFEKVRHLGQEMLELFLEKVKVSNHYDKQMELMSYNEYIEK FT KVAKTGNTIAAHSNRSEPDWNLNEIFLFMKTQLCTKYEKRFCEAKAGQTLACFSHIVLN FT RFAGPTRYIEKKISSYLPNNYYIHQKKNFDKLNEWVIENKFTGESLESDYEAFDSSQDC FT IILAFEYELLSYLGWNQSLLDDYLTIKFNLGCRLGNLAVMRFTGEFGTFLFNTLANMTF FT TFMSYDLDDKEAICFAGDDMCCNKPVKKRSDGRYDHILKRLTLKAKVSYTREPTFCGWR FT LTKHGIFKKPELVLERFLIAMEKGRLKEVIDSYFIECSYAYNLGERLYECFSEKDFIAH FT YCCVRIVHENSSLLKGVSLSKFNEGTGYRLSCSSQTAPSSLKNLIMERETLSASSSRMC FT TMMVDTPKIKKLDQQCALKVQYQLNQRVARIKSLKASQLLKQIGYKMRGIKENTRGSMS FT EQLSLASISLVTMKVRKTKGDAFLQMDEGKDQPASSKHLSLIFQRGLHILYWHQMQCLI FT SMMNYSQAHVNCFSSLMMLNTELGHCRLQLRLVLSIGCVMFSTVTILLEYQAERDLLEV FT LTRKSTQPKNLVNWMNPRFIMNSKKQKLQGEYPQSVVITTQLMKMAKEICAHHGRKEDL FT YPFVNIALRSMEMGRLKISIKLGLMMWKLMKEEFLRTYWILRLALPVNLQTGRVTTGRL FT ANMDAVANQAALDWANSTVGFPGEAYGVRIRKLRRRTLLRIHWLTRLKETFQTLGHVND FT PQNFTVIESNKYLTIMNDFAAHAFGILAEEGFSPATIYSEVLTNYTIDYGAPVGNITVE FT FSPANISREFKYYANSSNNNIFDNITWRQIGEAFAEDIVRYFKELQPDAQSWLVRSNPV FT LAGNAPWVALDVTDGLDIRRLNPEEKKVIARAKNHLLKSMQLKGRESLSAEALLES" FT mat_peptide 165..1091 FT /product="methyltransferase" FT mat_peptide 2064..2312 FT /product="papain-like protease" FT mat_peptide 2616..3392 FT /product="RNA helicase" FT mat_peptide 3798..5003 FT /product="RdRp" FT CDS 5045..6187 FT /codon_start=1 FT /product="p30-like movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:K4P1H7" FT /protein_id="AFV57241.1" FT /translation="MQFTNSSKFIEKFDNGKRNIKCIKFEDVYNDGGYTKDQKVGPAMC FT SESSISIKSESGENQIIKGFSIVEANWIQNERNKGKYQRVNVGAIIISIHKLGYYEGEK FT NKGRCFLADGRRKGPTCIIKAFEFDISKGPAHFVLAPNAVFDINDELLTSACELFFQFD FT DVEYRAGSLPFAIEIGAIYRMCNVFNCHHTLGVPGRKGSVGSSYQEIHATKKLGQLDES FT KIYHEFEKAKVAGRVSSVGCDYDTTYEDGKRNLCSPWKKRGPLSFRKYSIEINGNGEIE FT NFHQIRSDDVEVDERRVFENVLDSEVGFACKSSDREGNDWKVSEHGRGSESSSSGLGKF FT DSRIPGRSLWRKDQEVEEENAVKDSLANQIKGNISDSWAC" FT mat_peptide 6165..6713 FT /product="coat protein" FT 3'UTR 6717..7001 XX SQ Sequence 7001 BP; 2450 A; 1080 C; 1531 G; 1940 T; 0 other; ttccgatctt gcctcttatc cggcgtcccg taaaacaaat ggctttgtct taccgtacgc 60 cgaccgaact actaatcaac caacttccag caagactaac agacaacttg gccgtcaaac 120 aagttgatat actgcagtct gaagaagata gttatggaca atttcttaac ttcagtctaa 180 caaaagacca aagaaaattt ttagttgaaa agggtgttta cttatccccc tactcttgga 240 agcatcattc tcatccagct tgtaaaacaa tagaaaattg gttgctctat aaagaaatag 300 ggaatcatgt gaaacatgtt tgtaaggacg ctacaatagc ttttatatct ttgagagaag 360 gaaagttgaa tgctcttaaa aagatacatt ttagtggaaa agaggataaa aaattaagcg 420 aaaaaataac ttctttcaat agatattatt gtggcaaaga caaattgagg tacagaaaca 480 gtggagatag agaggtgata tacagctcat ttgatcaaat aagacaaaag actggcccaa 540 acgcatcata ctacatccat gatgaatgtc attactggtc accacaggat ctaggggcct 600 ttctagggaa gactcaggca agctccatat tagcaacaat cattcatcca acagagtatg 660 aagctggaaa ggatacatca cacctcccat tcctatatca atttgaagta gaaaataaca 720 agcttttctt tttcccagat ggaaacagga gtgaagggta tgaacaaccg tcaacagccg 780 gttggtggtt gagaatgagc agattcttct ttgatggaga agtatatagc atcactttgt 840 tgagaagcat agggccattc catttggtgt atttatcaaa gggttcttta accattgaga 900 ccaaaaggtt ttttgatgac tttaatatac ttgatatacc tgtcaaattc tacaagaaca 960 acatagtggg taaggccaat ttaatactaa ggacaggttt catgattaaa atagtaagtt 1020 atctcaagtc attgaagaaa cctgatcgtg agtcagcagt tgcaaagcta agaatgatga 1080 gtgaagaaga tttcagtgtt gaggagttaa tgtttgttga agggcttgct cagactctaa 1140 tgtcagatgg ttacagaagc atttgggaac aaggatggaa tgaatggata ataagtggtt 1200 taagagattg tatgccagat gctatacatc aaggaatatt caggaaacat ttcaaagcca 1260 aacagaattt tgaattatta gcgaacctca aaagtctaaa ggttgtccta agaactgatg 1320 attacaacga caaaagcgtt ctaacacaga gaaaatttct cttatcattt ggggaacatg 1380 ataactccca aaaagccaat gacaaaatat gtgacataat caggagtcaa agtgttaatg 1440 attatcttgg tggcccaaat gtaagtgagt attttctaga aaaagacact cgtgggcaaa 1500 tgttctttat attttttgaa aagcgtcaga aaccagtcga actcaggaca gagaagatga 1560 cttatgaaga ctgcattgaa ttaacaatga agaatgactc agataattat atatatagaa 1620 agagtgtctt taagcaaaac cccaaaaggt ttgatatagc ctgtaagctc aacatcagta 1680 aagcaaaaag aataaaggac acatacagaa tcttcaaaat tagttgtatc ccagattttt 1740 atagatcaaa aatttttgaa tccaaatttg tgatgatgtt agcagatggc ttcaacatgg 1800 acaaactaat tgtcttcttg atttctggag caaacactga aaaaaataag ataaagtgga 1860 gcacagacca agtacaagaa gaaaaagctg aaagcagtaa aagaaatgaa ctgaaggagg 1920 agtatttttc gatgtttgag aaggaggaag aaataatatt atctgaaaca gatgaggaag 1980 aggaagtacc cttacaaagg aagagtcaag aaatggagct gaaagaatca aatgagattg 2040 acgaaaaagc tttttgcaac ctcaaaaaca aatgttgttt tgaatcgatc atgcagtctc 2100 aaaattggag ctatgacaat ttactggatg ccatgaaagg aactgttttt attcagaaaa 2160 tgattgatga caagggtcta ttagttgatg agcttgtgga gctaatcaaa aagataaata 2220 ttaatgtgaa tgtggttgac tcagctggca agttaattga attaaataag ggagcagaga 2280 aagtgctact cctttcaagc aatcattgca agttcacgac aatggactct gtaaatcact 2340 ggaaattaaa tgattgcagc tttctcaatg agataatgaa tacaaattac ataattaaag 2400 aaactgcggt ctatgaaaga gcaagcaaac tatataagag catttcatct ggtaacactg 2460 gcgttatgct ccatgaaatg ctgaagaaaa acagtgaaac tgacagaaca aataaaaaga 2520 atagagtgct tgaagttctg aagttgttgt ttgatgatga aaatgataac tttaacagaa 2580 cctgccaaag caagggtcct atttatggaa tttttgggtt cgctggtagt ggaaaaagca 2640 aaggagtaca ggattacatt ctaaagccag aaaatgatga aaacatgttt actttgataa 2700 gcccaagaaa tgagcttcta gctgattgga aaaaaaagat tggcgaagag aaaaagaatg 2760 taaggtttct tacatatgaa aaagctttag catcatcata tgatgaaaat gaattagtaa 2820 ttgttgatga attaagtctg tacccacctg gttacatctc attgttacag gtggtcacaa 2880 agattaaaac tgacaaaata tctgggaata taagattatc caagaggaat tactctaatt 2940 atatgggaga tagaaacgtc agtatcatgg tactgggtga tcatttacaa aacagatatt 3000 acaatgagag tgacacaagg aaattgagcc aggttgatga aattgatttt attatggaaa 3060 atgaagaaat aatatatctg aattatagtc ttcgtctgtg taaagatcat ttttacaaac 3120 caggcattaa aaaactgggt gaaggaaagg ccaaaacgag caggagattt caaaacgttt 3180 atgtggccaa gaaagctatg cctgacgctc aattattggt tgcatcaagg gatgaagcta 3240 ttagattcaa aaatttagat gttaaaactt ttggagaatc acaaggattg acttttgatg 3300 atgtcataat aacactgtca ccgccagctg ttaactgctc cttgcagatg tggaatgtag 3360 caatgaccag agcaaggtat ggagttcatt ttgcattaaa tgggtttgac accgttgatg 3420 atttcttaaa caaagtgaag ggcaccccaa ttaatgcaat gatacttgga gtaaattttg 3480 atattcacaa taatgtaatc actaaaggaa agaactacaa tttaatatat gttgacaaaa 3540 tgggcttaaa tttagaagag gtggagctga agctacaagg tgatcctttt ttaaaatcaa 3600 tcataccaag ccttgataac ggtttgccag tggagatgga atatcaggat atcactcttg 3660 aaagtcctgt acccaaaata catcttccaa ttgaatcaat tcaggggcaa gtggcattca 3720 tatcaagtaa tttaaaagag agaatgcaaa gggagttcat aggggatgga ataattagtg 3780 aacaatttcc tgacttctgg aaggccggcg aaccgggtta cttattgagt caaagtgaaa 3840 gattccagag catattccca aaacatagta attcagacac tttaactttc tttgcagcag 3900 ttaaaaaaag gttaaaattt tcatcaccac aaattgaaag ggaaaagttt gaaaaagtga 3960 gacaccttgg tcaagaaatg ctcgaacttt tcctggaaaa agtaaaggta agcaatcact 4020 atgacaagca aatggaattg atgagctaca atgaatatat tgaaaagaag gtggccaaga 4080 cgggtaatac aatagcagct cactcaaata ggtcagagcc cgattggaat ttgaatgaga 4140 ttttcttgtt catgaaaaca caattatgta ctaagtatga gaaaaggttt tgtgaagcca 4200 aggctgggca aacacttgct tgctttagtc acattgtgtt gaacagattt gctggtccta 4260 ctaggtacat agagaagaag ataagcagtt acctgcctaa taattactac attcatcaaa 4320 agaagaactt tgataagttg aatgaatggg taattgaaaa taagttcact ggtgagagcc 4380 ttgaaagtga ctatgaagca tttgattcct ctcaggattg cattatatta gcattcgagt 4440 atgaattgct gagttatctt ggatggaatc aaagtctgtt agatgattac ctaaccatta 4500 agttcaatct gggatgtagg ttggggaatt tagcggtaat gcgtttcact ggagaattcg 4560 gcactttttt atttaacaca ttggccaaca tgacattcac atttatgagc tatgatcttg 4620 atgataagga agccatatgt ttcgctggag atgacatgtg ctgcaacaaa ccagttaaaa 4680 aaagatcaga tggtaggtat gatcacatac tgaaaaggtt gactctaaag gcaaaggtta 4740 gttacacgag ggaaccaact ttctgcgggt ggagattaac taaacatgga attttcaaga 4800 agccagaact tgtgttggaa agatttttaa tagcaatgga gaagggaagg ctaaaggagg 4860 tgatcgatag ttatttcata gaatgcagct atgcctacaa tttaggtgag agactttatg 4920 aatgtttttc tgaaaaagat ttcatagctc attattgttg cgtgagaata gtgcatgaaa 4980 actcaagctt actgaaaggg gttagtttga gtaagttcaa cgagggcaca gggtacagac 5040 tgtcatgcag ttcacaaaca gctccaagtt cattgaaaaa tttgataatg gaaagagaaa 5100 cattaagtgc atcaagttcg aggatgtgta caatgatggt ggatacacca aagatcaaaa 5160 agttggacca gcaatgtgct ctgaaagttc aatatcaatt aaatcagaga gtggcgagaa 5220 tcaaatcatt aaaggcttct caattgttga agcaaattgg atacaaaatg agaggaataa 5280 aggaaaatac cagagggtca atgtcggagc aattatcatt agcatccata agcttggtta 5340 ctatgaaggt gagaaaaaca aagggagatg ctttcttgca gatggacgaa ggaaaggacc 5400 aacctgcatc atcaaagcat ttgagtttga tatttcaaag gggcctgcac attttgtact 5460 ggcaccaaat gcagtgtttg atatcaatga tgaattactc acaagcgcat gtgaactgtt 5520 tttccagttt gatgatgttg aatacagagc tgggtcattg ccgtttgcaa ttgagattgg 5580 tgctatctat aggatgtgta atgttttcaa ctgtcaccat actcttggag taccaggccg 5640 aaagggatct gttggaagtt cttaccagga aatccacgca accaaaaaac ttggtcaatt 5700 ggatgaatcc aagatttatc atgaattcga aaaagcaaaa gttgcaggga gagtatcctc 5760 agtcggttgt gattacgaca caacttatga agatggcaaa agaaatttgt gctcaccatg 5820 gaagaaaaga ggacctttat cctttcgtaa atatagcatt gagatcaatg gaaatgggga 5880 gattgaaaat ttccatcaaa ttaggtctga tgatgtggaa gttgatgaaa gaagagtttt 5940 tgagaacgta ttggattctg aggttggctt tgcctgtaaa tcttcagaca gggagggtaa 6000 cgactggaag gttagcgaac atggacgcgg tagcgaatca agcagctctg gattgggcaa 6060 attcgacagt cggattcccg ggcgaagctt atggcgtaag gatcaggaag ttgaggagga 6120 gaacgctgtt aaggattcac tggctaacca gattaaagga aacatttcag actcttgggc 6180 atgttaatga cccacaaaat ttcactgtca tagagtcaaa taagtacctc actataatga 6240 atgattttgc tgcccatgcc ttcggaatac tggctgaaga aggtttctcg cctgcaacca 6300 tatacagtga agtgttaacc aattacacca tagactatgg tgcaccagtt ggcaacatca 6360 ctgttgaatt tagtccagcg aacatttcaa gggagttcaa atattatgcc aatagctcca 6420 ataacaatat atttgataac ataacttgga gacagatagg ggaagcattt gctgaggata 6480 ttgtgaggta cttcaaggag ctacaacctg atgcacaaag ttggctagtt agatccaacc 6540 ctgtattggc tggaaatgca ccatgggttg cacttgatgt aactgatggt ctggatatta 6600 ggaggctgaa tcctgaggag aaaaaggtga tcgctagagc taaaaatcac ctactgaagt 6660 ccatgcagtt gaagggaagg gagtccctgt ccgcggaagc tttgctggag agttagggaa 6720 tggttaacac cattaccctc gttgcctagg ggctactctc gtacatcagc aggtggctat 6780 ttgtccactt atggcttatg tttagttcac ttcaaatttg cttgtttgaa tgttgtgtcg 6840 ttaccggcaa tcaaaccggt gttagtttgt ttttatttta aataaagttt taactggcta 6900 ttttcctaac ctattcggga ttagcccatg ggtttttatg catatttcct ttgtttgatg 6960 tttgtttgtt tggtcaaaaa aaggaaatat gcataaaaac c 7001 //