ID JX173276; SV 1; linear; genomic RNA; STD; VRL; 6956 BP. XX AC JX173276; XX DT 31-OCT-2012 (Rel. 114, Created) DT 10-MAR-2013 (Rel. 116, Last updated, Version 2) XX DE Diuris virus A isolate SW3.3, complete genome. XX KW . XX OS Diuris virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Divavirus. XX RN [1] RP 1-6956 RX PUBMED; 23089850. RA Wylie S.J., Li H., Dixon K.W., Richards H., Jones M.G.; RT "Exotic and indigenous viruses infect wild populations and captive RT collections of temperate terrestrial orchids (Diuris species) in RT Australia"; RL Virus Res. 171(1):22-32(2013). XX RN [2] RP 1-6956 RA Wylie S.J.; RT ; RL Submitted (12-JUN-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 13df2fce58f27bad7f6f4285a6faa75e. XX FH Key Location/Qualifiers FH FT source 1..6956 FT /organism="Diuris virus A" FT /host="Diuris pedunculata" FT /isolate="SW3.3" FT /mol_type="genomic RNA" FT /country="Australia" FT /collection_date="1973" FT /db_xref="taxon:1247115" FT 5'UTR 1..38 FT CDS 39..6716 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:K4P1P6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K4P1P6" FT /protein_id="AFV57238.1" FT /translation="MALSYRTPTEYLINQLPARLTDNIAVKQVDLIQSDEDCYGSYLNY FT NLSKEQKKFLVDKGLYLSPYSWRHHSHPACKTIENWLLYKEIGSYAKHVSKQQTIAFIS FT LREGKLNAIKKIHFEKKNNKVACEKICSFNRYYHTKDRLRYSDSSGREIIYKSFDKIGD FT QIGPRASFYIHDECHYWSPNDLSNFLSRTKAESILATVIHPTEIDVGKDCSHLPFLYEF FT EVSDNNIFFFPDGNRSEGYEQPKTAGWWLKMRRFYSDGEVYSVTLLRTIGPFHLIYISR FT GSLASESRRFFDDFNILDLPVKYAKNNLIKKMKLLLRNNFMIKIVSYIKSLKKPDKESA FT IAKLRMLSEDEFSLEEMIFVDGLVDTLLKNGYKSIWENGWVEWFICGLKDCLPDALHSA FT MFRSHFKAKQNLDLLMNMKTLSIVVETEDFYPYSKVDCIKEIKEYFLNSCDYLQRDNID FT KIIRSSFRGEYIYDYDTSGYYSIRTTSGKMELHGPDSRHLMRSAHDCISYEANIKLFGN FT NHMEKMRIENRFWFLNDEKRFENAKRESISRCKTIFDEYDAILEEELPDDSIFKGFNKG FT VSFFKKKTMRMNECLIMLRTGVYNKSKLISNIKHVDDPFSTMEKHKRDRLNKVIKYYIG FT GVEYEMPSSQVSELEEITEITPINRLSSSNPMDEKTFRNLANKCCFDCIMEIKKIDHVA FT LVNYITETKFMDLLLKDNGLLQKELIELCNFLNIKVNIINQSGTRLIYENDNDNTLILT FT ERHCKLVKTESISDWLLDDNKDFLDVTGVSSIIKNVFDYKRSKKLYDSLSKGTSGVFFN FT MIKKKNDESEKKKDKNRVIEMMNFFFEDEINEKRKLTGRSEPIYGFFGFAGSGKSREIQ FT NYINTNYNMDGCVTVVSPRVELLKDWEKKISVANKKIRFSTYEKALTLSYYEDELVVVD FT EIGLLPPGYISLLSLVTAFRVNKISHNIRLSKRNYSKYVENQSSRLVLLGDHLQGRYYN FT ESDFRSLSQPDEIDFIMMNEEILYLNYSHRLNKMHFYKPGVEMLGEDENIISRRFSNVF FT SAKKTIPEAQLLVASRDEQVRFKELDAKTFGESQGLTFDEIIIVLSPPAVNCSINMWNV FT AMTRARKGVHFALNGFDTVDDFINRVKGTPVNAMILGSPFEIHRTPGGKDKEIKIIKVC FT RLGMSNEDVEMKLMGDPFLKSIIPSLDEGLSIEQEYHDIICESPVPKIHLPIESIQGHV FT SYVSSMLKERGEREFKGDGCMSEQFPDFWKTGEPGHYLSQSERFQSIFPKHQNSDSLTF FT LAAVKKRLKFSSPSVERERFEKVRHLGNEMLDIFLDKIKIDNKLNSEMMARSYNEYVLK FT KVSKTANTIASHSSRSEPDWKLNEIFLFMKTQLCTKFEKRFSDAKAGQTLACFSHIILN FT RFAAPTRYVEKKISEGLGKNFYIHQKKNFDVLNDWVVANNFDSYCLESDYEAFDSSQDC FT LILAFEYELLKYLGWDQSLLDDYLDLKFNLGCRLGNLAVMRFTGEFGTFLFNTLANMVF FT TFMTYDLNGTESICFAGDDMCCNRGIKARVDGKYDHILKRLTLKAKAVITKEPTFCGWR FT LTKYGIFKKPELVLERFLIAIEKGRLLDVIDSYYIECSYAYNLGERLFECFSEKDFSAH FT YCCIRIVHKNKSLLKGLSLERYRENRRFKHSCKSWIQRPSYRSSTMEDETLIASGSVRC FT TQMGVSSKTRRLTQFREQKVQFQLNQLMGSPGLLKEYLLLTQMLLMRRETRRSIQKSIL FT EQLSSVSTSLVIMNVRCQEEDVCWLTVEEVEEVELSKPLSLIYPKDQPTSCSYQMQSLT FT FMMSYLTGPVKCSSSLTMLITVVVPTHLLLRLGQYIACLMSSIAITEWEFQEERVPLEV FT SIRKYIALRPYQRKMRSQCCQRCVSQERLEEYLMLREALALNLKGVREVLSCLGEKEAL FT LSFEIIVSEKGLVKLRKIYAGLGQAQEVLMKETFLKRFWIINLGLPVNAENFKVTSGKQ FT AMVDQAANLALSNWINETTGFQGEAYGVRLRKLRRRTLLRQHWVSVFKEYVKNLGHANT FT PAEFTAAESEIYGRVMSDFAAYAFGIMAEEGFSPATIYNEVPASYTIEYPQPVGALNVS FT FSPAEVSRQFKYYANSSGNSCFANITWRQIGESFAEDIVRYFKELQVDAQSWLVRSNPV FT LAGNAPWVALDVTDGLDVRRLNPEEKKVIARAKNHLLKSMQLKGRESLSAEALLES" FT mat_peptide 165..1091 FT /product="methyltransferase" FT mat_peptide 2064..2312 FT /product="papain-like protease" FT mat_peptide 2616..3392 FT /product="RNA helicase" FT mat_peptide 3798..5003 FT /product="RdRp" FT CDS 5045..6214 FT /codon_start=1 FT /product="p30-like movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:K4PEV9" FT /protein_id="AFV57239.1" FT /translation="MQVVDPKAFIQKFDNGGRNIDCIRVSEVYSDGGFIKNEKVDAVQR FT TESSISIKSINGESRIIKGIPIIDPNVIDEERNKKKYSKVNIGAIIISIHKLGYYEREM FT SRGRCLLVDGRRSGGGGIIKAFEFDISKGPAHFVLVPNAVFDIHDELLDRACEVFIIFD FT NVNYRGGSYPFAIEIGAIYRMSNVFNCYHRMGVPGRKGSIGSIYQEVHCTKTISEEDEE FT SVLSEMCVAREAGRISDAERSFGFESERGKRSLIMPWRKRGPSFFRDYSVGEGSSETEE FT NLCRVRSSTGSIDERDIPEKVLDNKFRSASERRKLQSNFREASHGRSSCKPRSVKLDKR FT DDRVPGGSLWREVEEIEEEDITEAALGECFQGVREKLRAREHPSGVHGC" FT mat_peptide 6165..6713 FT /product="coat protein" FT 3'UTR 6717..6956 XX SQ Sequence 6956 BP; 2385 A; 1012 C; 1552 G; 2007 T; 0 other; ttccgatctt gcctcttatc cggcgtcccg tacaatagat ggccctatcg taccgtacgc 60 cgaccgagta cttaataaat caattaccag ctagattaac tgataatata gcagtgaaac 120 aggtagactt aatacagtct gatgaggact gctatggatc atatctgaac tataaccttt 180 caaaggagca aaaaaaattt ttagtggaca aagggttata tttgtcacca tactcttgga 240 gacatcactc acatcctgct tgcaagacca ttgaaaattg gttattgtat aaggaaatag 300 gtagctatgc aaagcatgtg agcaagcaac aaaccatagc tttcatatct ctaagggagg 360 ggaagctaaa tgctattaaa aaaatacact ttgaaaaaaa aaataacaaa gtggcatgtg 420 agaagatatg ctcatttaat aggtactacc acacaaagga taggcttagg tattcggata 480 gtagcgggag agagataatt tataagtctt ttgacaaaat aggtgatcaa ataggaccta 540 gggcttcatt ttatatacat gatgaatgcc attattggtc accaaatgat ttgagcaatt 600 tcttgagtag aacaaaagca gaatcaatat tggcaactgt tattcatcca acagaaattg 660 atgtagggaa ggactgttca catctacctt tcttatatga gtttgaagtt agcgataata 720 atatattctt ctttcctgat ggaaacagaa gtgaaggtta tgagcaacca aagactgctg 780 gctggtggtt aaaaatgaga cggttctata gtgacggaga ggtatatagt gttacgctct 840 taagaacaat aggacccttt cacttgattt acatatctag aggctctcta gcttcagagt 900 cacggaggtt ttttgatgat ttcaacattt tagatctgcc agtaaaatat gccaaaaata 960 atctaattaa gaaaatgaag ttactgttga ggaacaattt tatgatcaaa atagtcagtt 1020 atatcaaatc actgaagaag ccagataagg agtcagcaat agcaaaactg agaatgctca 1080 gtgaggatga attctctctt gaagagatga tttttgtaga tggtttggtg gacactctac 1140 ttaaaaatgg ctataaaagt atatgggaaa atggttgggt agaatggttt atatgcggcc 1200 ttaaggattg tttacctgat gcccttcact cagctatgtt taggagtcat tttaaggcta 1260 agcagaattt ggatttatta atgaacatga aaactctatc aatagtggtt gaaactgagg 1320 atttctaccc ttattcaaaa gttgactgca ttaaagagat taaagagtat ttcttgaatt 1380 cttgtgatta cctacaaaga gacaatattg acaaaataat caggagcagc tttagagggg 1440 aatatattta tgattatgat acttctggct actacagcat aagaaccaca agtggcaaaa 1500 tggaattgca tggtccagat tcaagacatt tgatgagaag tgcacatgat tgcattagct 1560 atgaggccaa cattaaatta tttggcaata atcatatgga gaaaatgagg atagagaaca 1620 gattctggtt cttgaatgat gaaaaaagat ttgagaatgc aaaaagagaa agtataagta 1680 gatgtaaaac aatatttgat gagtatgatg caatattgga ggaagaatta ccagatgact 1740 caattttcaa aggttttaac aaaggcgtga gtttttttaa aaaaaaaaca atgagaatga 1800 atgagtgctt gataatgtta agaactggcg tgtataacaa atcaaagctg atatcaaata 1860 ttaaacatgt ggatgaccca ttttcaacga tggagaagca caaaagagat agattaaaca 1920 aggtgattaa gtattacatt ggcggtgtgg aatacgagat gccttctagc caagttagtg 1980 aattagaaga aattactgag ataacaccta ttaataggtt aagttcatca aacccaatgg 2040 atgaaaagac ctttagaaat ctggctaata aatgctgctt tgattgcatt atggagatta 2100 aaaaaataga tcatgtagca ctggtgaatt acataactga aacaaaattt atggatcttc 2160 tactcaaaga taatgggctc cttcaaaaag aacttattga attatgcaat tttctaaata 2220 ttaaagtaaa cataataaat caatctggca ctagacttat ttatgaaaat gataatgaca 2280 acactctaat tttaaccgaa agacattgca agctagtgaa gacagagagc ataagtgact 2340 ggcttctaga tgataataag gatttcttgg atgtcactgg cgttagttca attatcaaga 2400 acgtttttga ctataaaaga tcaaagaaac tctatgatag cttgtcaaaa ggaacatctg 2460 gagttttttt taatatgatt aaaaaaaaaa atgatgagtc tgaaaaaaaa aaagataaga 2520 atagagtaat agaaatgatg aatttctttt ttgaagatga gataaatgaa aaaagaaaac 2580 tgactggaag atcagagcca atttatggtt tttttggttt tgctgggtca ggaaagagta 2640 gagaaataca gaattacata aatacaaatt ataacatgga tggctgtgtc actgtggtga 2700 gtccaagagt agagctactc aaggattggg aaaagaaaat aagtgtagca aataaaaaaa 2760 taaggtttag tacttatgaa aaggcactaa ccttatcata ttatgaagat gaattggtgg 2820 tggtggatga aatagggttg ttgccacctg ggtatatatc tttgttatct ttggtaactg 2880 cttttagagt aaataaaata tcccataata taagattatc aaagagaaat tattctaagt 2940 atgtggagaa tcaatccagt agactagtac tgttgggtga tcatctacag ggtagatatt 3000 ataatgaaag tgactttaga tcattatcac aacctgatga aatagatttc attatgatga 3060 atgaagaaat actttatttg aattacagtc atagactgaa taagatgcat ttttacaagc 3120 ctggtgtaga aatgctcgga gaagatgaaa atataatatc caggcgattt tcaaacgtct 3180 ttagcgcaaa aaaaacaata ccagaagcac agttgcttgt ggcttctaga gatgagcaag 3240 ttagatttaa agaattagat gccaaaactt ttggtgaatc acaaggtcta acatttgatg 3300 aaataatcat agtcctgtct ccccctgctg tcaattgctc aataaatatg tggaacgtag 3360 ctatgactag agcaagaaaa ggagtacact ttgctctcaa tggttttgat accgttgatg 3420 attttatcaa tagagtaaag ggcactcctg taaatgccat gatattagga agtccgttcg 3480 aaatacatcg aacaccaggt gggaaagaca aggaaattaa aataattaaa gtgtgtagac 3540 ttggaatgag caatgaggac gtggaaatga agctaatggg cgaccctttt ttaaaatcca 3600 taataccatc tttagatgag gggttgtcaa tcgaacaaga atatcatgat ataatatgtg 3660 agagcccagt accaaaaata catttaccaa tagaatcaat acagggtcat gtcagctatg 3720 tgtctagtat gttaaaagaa aggggtgaaa gagaatttaa gggtgacggc tgcatgagtg 3780 aacaatttcc tgacttttgg aaaactggtg aaccaggcca ctacttgagt caaagtgaaa 3840 ggtttcagag catatttcca aaacaccaaa atagtgattc attgaccttt ttagcagctg 3900 ttaaaaaaag attaaaattc tctagtccat cagttgaaag agaaagattt gaaaaggtta 3960 gacatctggg taatgagatg ttggacatct ttttggataa aataaagata gacaataaat 4020 taaacagcga gatgatggcc agaagctata atgagtatgt gcttaaaaag gtgtcaaaga 4080 cagcgaacac aatagcttct catagctcca gatcagaacc tgattggaag ctcaatgaga 4140 tttttttatt catgaagaca caattgtgta ctaaatttga gaaaaggttc tctgatgcca 4200 aagctggaca aactttggca tgtttcagtc atattatact aaatagattt gctgccccaa 4260 caagatatgt tgaaaagaaa ataagtgaag gtcttggaaa gaacttctac atacatcaaa 4320 agaagaattt tgatgtgtta aatgattggg tagtagcaaa taattttgat tcttattgct 4380 tagaaagtga ttatgaagct tttgattcat cccaagattg cttgatattg gcttttgaat 4440 atgaattgct caagtatctt ggttgggatc aaagtttact tgatgattac ttagacctca 4500 agtttaattt ggggtgcaga ttggggaatc tggctgtaat gaggtttact ggcgagtttg 4560 gtacttttct gtttaacact ctcgcaaaca tggttttcac attcatgaca tatgacttga 4620 atggtaccga atcaatatgt tttgctgggg atgatatgtg ttgcaacagg ggtataaaag 4680 ccagagtcga tggaaagtat gatcacatac ttaagagatt gactttaaaa gctaaggctg 4740 tgatcactaa agaacccact ttctgtgggt ggagattaac taaatacggt atttttaaaa 4800 aacctgaact tgttctggag cgatttctca ttgctattga gaaaggaaga ctactagatg 4860 taatagatag ctattatatc gaatgtagtt atgcctacaa tttaggtgag agactattcg 4920 aatgtttttc tgaaaaagat tttagtgcac attattgttg tattagaata gtgcacaaga 4980 ataagtcttt attgaagggg ttgagtcttg aaagatacag agagaataga cgtttcaagc 5040 actcatgcaa gtcgtggatc caaaggcctt catacagaag ttcgacaatg gaggacgaaa 5100 cattgattgc atcagggtca gtgaggtgta ctcagatggg ggtttcatca aaaacgagaa 5160 ggttgacgca gttcagagaa cagaaagttc aatttcaatt aaatcaatta atggggagtc 5220 caggattatt aaaggaatac ctattattga cccaaatgtt attgatgagg agagaaacaa 5280 gaagaagtat tcaaaagtca atattggagc aattatcatc agtatccaca agcttggtta 5340 ttatgaacgt gagatgtcaa gaggaagatg tttgttggtt gacggtagaa gaagtggagg 5400 aggtggaatt atcaaagcct ttgagtttga tatatccaaa ggaccagccc acttcgtgct 5460 cgtaccaaat gcagtctttg acattcatga tgagttactt gacagggcct gtgaagtgtt 5520 catcatcttt gacaatgtta attaccgtgg tggttcctac ccatttgcta ttgagattgg 5580 ggcaatatat cgcatgtcta atgtcttcaa ttgctatcac agaatgggag ttccaggaag 5640 aaagggttcc attggaagta tctatcagga agtacattgc actaagacca tatcagagga 5700 agatgaggag tcagtgctgt cagagatgtg tgtcgcaaga gaggctggaa gaatatctga 5760 tgctgagaga agctttggct ttgaatctga aaggggtaag agaagtctta tcatgccttg 5820 gagaaaaaga ggcccttctt tctttcgaga ttatagtgtc ggagaagggt ctagtgaaac 5880 tgaggaaaat ttatgcaggg ttaggtcaag cacaggaagt attgatgaaa gagacattcc 5940 tgaaaaggtt ctggataata aatttaggtc tgccagtgaa cgcagaaaac ttcaaagtaa 6000 cttccgggaa gcaagccatg gtagatcaag ctgcaaacct cgctctgtca aattggataa 6060 acgagacgac agggttccag ggggaagctt atggcgtgag gttgaggaaa ttgaggagga 6120 ggacattact gaggcagcat tgggtgagtg ttttcaagga gtacgtgaaa aacttagggc 6180 acgcgaacac cccagcggag ttcacggctg ctgagagtga gatatatggg agagttatga 6240 gcgacttcgc cgcgtatgct tttggcatta tggcagaaga gggtttctcc cctgccacca 6300 tatacaatga agtgcctgct agctacacta tcgagtaccc ccaacctgtg ggggctctga 6360 atgtgtcatt ttcacctgca gaagtttcaa gacagtttaa gtattatgca aacagttcag 6420 ggaatagctg ttttgctaat ataacttggc gacaaattgg tgagagtttt gctgaggaca 6480 tcgtcaggta cttcaaagaa ttgcaggttg atgcacagag ttggctagta aggtcaaacc 6540 cggtgctggc tggaaatgct ccttgggttg cgttagatgt gacggatggt ctggatgtca 6600 ggaggctgaa tccagaagag aagaaggtga tagcaagagc taagaatcac ttgctgaagt 6660 ccatgcagtt gaagggaagg gagtccctgt cagctgaggc cctgcttgaa agttaatact 6720 tttggggcct acgaccaaca actatcaggt tctgttgtgg tcaccttggt gtttctaggg 6780 aaacacccgc cccgtttgtt cggaaggttc tttgggggtc caagttttag aaccaactct 6840 gttttagata ttatataata ttagtatttc tgccacctat aggcagtagc tctgcagttt 6900 ttctttgcgc ttttctgttg ttttcttaag tattttctta aaaaaaaaaa aaaaaa 6956 //