ID JX162594; SV 1; circular; genomic DNA; STD; VRL; 2601 BP. XX AC JX162594; XX DT 26-AUG-2012 (Rel. 113, Created) DT 26-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Sida golden mosaic Braco virus-[Jamaica:Liguanea:2008] clone pBrA3, DE complete genome. XX KW . XX OS Sida golden mosaic Braco virus-[Jamaica:Liguanea:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2601 RA Martin D.P.; RT "Mixed begomoviral infection of Sida spp. in Jamaica and possible evidence RT of recombination"; RL Unpublished. XX RN [2] RP 1-2601 RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT ; RL Submitted (11-JUN-2012) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; a625f6507a002425083404b9c8d3aa1b. XX FH Key Location/Qualifiers FH FT source 1..2601 FT /organism="Sida golden mosaic Braco FT virus-[Jamaica:Liguanea:2008]" FT /host="Sida sp." FT /isolate="Jamaica:Liguanea:2008" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2008" FT /clone="pBrA3" FT /db_xref="taxon:929767" FT misc_feature 16..2461 FT /note="IR; contains conserved sequences essential for viral FT replication" FT gene 183..938 FT /gene="CP" FT CDS 183..938 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /function="responsible for viral encapsidation" FT /db_xref="GOA:E5KBZ6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5KBZ6" FT /protein_id="AFP99145.1" FT /translation="MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY FT RKPLIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(935..1333) FT /gene="REn" FT CDS complement(935..1333) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer" FT /function="enhances replication" FT /db_xref="GOA:J7HHK5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J7HHK5" FT /protein_id="AFP99146.1" FT /translation="MDSRTGELITARQAENGVYIWEIENPLYFKIDRVEELLYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQVWTKSMTASGSTYLVRFRRLVNMYLDNLGVISINN FT VIRAVQFATDNAHVSYVIEHHEIKFKFY" FT gene complement(1080..1469) FT /gene="TrAP" FT CDS complement(1080..1469) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /function="activates the transcription of the CP and NSP" FT /db_xref="GOA:E5KBZ8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5KBZ8" FT /protein_id="AFP99147.1" FT /translation="MLNSSPSQPPCIKKAHRQAKRRAIRRRRIDLDCGCSIYLHIGCTG FT HGFTHRGTHHCTSGREWRLYLGDRKSPVFQDRQSRGTTIHQDQSVPRPDTIQPQPEESV FT GSPQSLPELPSLDEIDDSFWVNLFS" FT gene complement(1381..2466) FT /gene="Rep" FT CDS complement(1381..2466) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /function="responsible for viral replication" FT /db_xref="GOA:E5KBZ9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5KBZ9" FT /protein_id="AFP99148.1" FT /translation="MPRKGSFYVKAKNYFITYPDCSLTKEEALSQLQNLSTPVNKKFIK FT ICRELHQNGNPHLHVLVQFEGKYQCTNNRFFDLVSPNRSTHFHPNIQGAKSSSDVKSYI FT AKDGDTIEWGVFQIDGRSARGGQQSANDAAAEALNSGTKEEAMQIIKEKLPEKFLFQYH FT NLSSNLDRIFAKVHEPWTPPYHLSSFTKVPAEMQQWADDYFGRGAAARPERPVSIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKAENSALKNWTIKNAKFITLT FT APLYQEGTQASQEAGHQETQD" FT gene complement(2052..2309) FT /gene="AC4" FT CDS complement(2052..2309) FT /codon_start=1 FT /gene="AC4" FT /product="aC4" FT /function="potential gene silencing suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5KC00" FT /protein_id="AFP99149.1" FT /translation="MGTLISTCLFSSRVNTSAQITDSSTWCPQTGQHISIQTFRELNPV FT PTSSPTSQRTGTPLNGECSRSTVEVLEAVNNQLMTQLLKR" XX SQ Sequence 2601 BP; 630 A; 580 C; 610 G; 781 T; 0 other; accggatggc cgcgcgattt ttccgccttt tactttccac gcgcgccccg cttttctcac 60 tcgcgctatc gtccaatcat attgcgcctg ccgcgcctaa ttaatttaaa caacttgggc 120 cctaagttgt tgtctgggcc tataaaggaa aagcgggttt gggccacagt ctttaattca 180 aaatgactaa gcgcgattca tcttggcgct cgattgctgg aacctcaaag gttcgtcgca 240 cgttgaattt ctccccacgt ggaggtggtg gcccaaaaca gacacgggcc tcagaatggg 300 ttaataggcc tatgtacagg aagcccttga tctatcggac tttacggacg cccgacgtgc 360 ccagaggttg cgaaggcccg tgtaaggtac agtcctatga acagcgtcat gatatctccc 420 acgtcggcaa ggtgatgtgt atttctgatg tcactcgtgg taatggcatt acccaccgtg 480 tgggtaagcg tttttgtgtt aagtctgtgt atattttagg taagatatgg atggatgaga 540 acatcaagct caagaaccac acgaacagtg ttatgttctg gttggtcagg gaccgtcgac 600 catatggcac tccaatggac tttggccaag tgttcaacat gtatgacaat gagcccagta 660 ctgccactgt gaaaaacgat ctcagggatc gttaccaggt tatgcatagg ttctacggca 720 aggtcacagg tggtcaatat gctagcaacg agcaggcttt ggtcaggcgt ttctggaagg 780 tcaacaacca tgtggtttac aaccaccaag aggctggcaa gtacgagaat cacactgaga 840 acgcgttgtt attgtatatg gcatgtacac atgcttctaa ccccgtgtat gcgacattga 900 aaattcgaat ctatttttat gattcgataa caaattaata aaatttgaat tttatttcat 960 gatgttcaat tacataactt acatgcgcat tgtctgttgc gaactgcaca gctctaatta 1020 cattgttaat ggaaattacg cctaagttgt ctaagtacat attgactaac cgtctaaacc 1080 taactaaata agttgaccca gaagctgtca tcgatttcgt ccagacttgg aagttcaggt 1140 aggctttgtg gagacccaac actctcctca ggttgtggtt gaatcgtatc tggacgtggt 1200 acactctggt cctggtgtat agtagttcct ctactctgtc tatcttgaaa tacaggggat 1260 tttctatctc ccagatatag acgccattct ctgcctgacg tgcagtgatg agttcccctg 1320 tgcgtgaatc catgacctgt acagcctatg tggaggtata tggagcaccc gcaatctaaa 1380 tcaatcctgc gtctcctgat ggcccgcctc ttggcttgcc tgtgtgcctt cttgatacaa 1440 gggggctgtg agggtgatga atttagcatt cttgatagtc caattcttga gagctgagtt 1500 ttcagctttg tccaggaatt ctttatagct ggcaccctca ccaggattgc aaagcacgat 1560 tgatgggatc cctcctttaa tttgaactgg cttgccgtat ttgcaatttg actgccagtc 1620 cttctgggcc cccagaagtt ctttccagtg ctttagcttt agatattgcg gtgcgacgtc 1680 atcgatgacg ttatattcca cttcatttga atagactctg gaattgaagt ctaggtgtcc 1740 actgaggtaa ttatgtgggc ctaacgcacg agcccacatc gtcttccctg tccttgaatc 1800 accttctact atgatactca caggcctctc cggccgcgca gcggcacctc tgccgaaata 1860 gtcatcagcc cattgttgca tctcggccgg tacctttgtg aaagaggaga ggtgatatgg 1920 aggagtccat ggctcatgaa cctttgcgaa gattctatcc aaattacttg ataagttatg 1980 atattggaat agaaattttt ctggtaattt ctcttttatg atttgcatgg cctcctcctt 2040 tgttccagag ttcaacgctt cagcagctgc gtcattagct gattgttgac cgcctcgagc 2100 acttctaccg tcgatctgga acactcccca ttcaatggtg tccccgtcct ttgcgatgta 2160 ggacttgacg tcggaactgg atttagctcc ctgaatgttt ggatggaaat gtgttgacct 2220 gtttggggac accaagtcga agaatctgtt atttgtgcac tggtatttac cctcgaactg 2280 aacaagcacg tggagatgag ggttcccatt ctgatgaagt tctctgcaga ttttgatgaa 2340 cttcttgttc actggtgtag aaagattttg taattgggaa agtgcttctt ctttggttag 2400 agagcagtct ggataagtga tgaaatagtt tttggcttta acatagaaag aaccctttcg 2460 tggcattttt gtaataagat gtgtgtaccc ccaatagcta tctcgctcaa aattcctatg 2520 aattgggggt actaggggta catttatatt agaagttcca tgggttagat cagacacgtg 2580 gcggccatcc gatataatat t 2601 //